Rw6G017920

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011507
Physical Location & Seq
Reverse (-)
35460114 .. 35467128
7015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017920.1

Sequence Viewer

Length: 501 bp
ATGATTTCGTCCACTCGGGCCTTAGGGTGCCTGCTAACACTTAACATATACAAGTTTGGGTTCATAACTGCATTTGCTTTTAACTTCTCTGGCCTCAATGGCCTCATCATTTCTATGGGTCGCGCAGATGTGGAAGTTGGTGATGTTGTACCCATCCACTCTCACCCCGGAGCTACCAAATTGGTGGTTATTGGGGAAGGAAGTTCGATAATTGGTGGGTTCAATGCCTCGAACAACAAGGTTTATCAAAAGCCTCTGAACAAGGGTGACACTATGGTTCTGTATCGACATGTTCTTTCTCAAGGCTTGTATCACTTTGTGAATCAGGGTAAAACTTCAGTGGTCATATATGTTGCTTTCAGTAGTCAAAGCCCAACTTTGCAGCTTTTGGACGTATCACTCTTTCAAAATGATTTGGCTACTGATATCATAGCAAAGACTACTTTACTTGACGCTGCTCAGATTCAGAAACTCAAAAAACTCTTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

166

Amino Acids

17.87

Weight (kDa)

9.27

Isoelectric Point (pI)

22.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 23 - 155 1.5e-16 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 27
AccII CGCG 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 321
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 2 cut(s) 150, 493
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 2 cut(s) 223, 407
AluBI AGCT 2 cut(s) 173, 385
AluI AGCT 2 cut(s) 173, 385
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 3 cut(s) 18, 91, 100
ApeKI GCWGC 2 cut(s) 382, 455
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 152, 155, 278
AvaI CYCGRG 1 cut(s) 15
AxyI CCTNAGG 1 cut(s) 22
BanI GGYRCC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 394, 442
BccI CCATC 1 cut(s) 161
BcnI CCSGG 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 99
BisI GCNGC 2 cut(s) 383, 456
BlsI GCNGC 2 cut(s) 384, 457
Bme1390I CCNGG 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 166
Bse21I CCTNAGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 473
BseXI GCAGC 2 cut(s) 394, 442
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 20, 93, 102
BshNI GGYRCC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 168
BsnI GGCC 3 cut(s) 20, 93, 102
BsoBI CYCGRG 1 cut(s) 15
BspANI GGCC 3 cut(s) 20, 93, 102
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 22, 459
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 125
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 394, 442
BstXI CCANNNNNNTGG 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 22
BsuRI GGCC 3 cut(s) 20, 93, 102
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 32
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 18
CseI GACGC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 149, 492
CviAII CATG 1 cut(s) 290
CviJI RGCY 9 cut(s) 20, 93, 102, 173, 253, 306, 372, 385, 419
CviKI_1 RGCY 9 cut(s) 20, 93, 102, 173, 253, 306, 372, 385, 419
CviQI GTAC 2 cut(s) 149, 492
DdeI CTNAG 2 cut(s) 22, 459
DraIII CACNNNGTG 1 cut(s) 319
Eco32I GATATC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 321
Eco81I CCTNAGG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 15
EcoRV GATATC 1 cut(s) 427
FaeI CATG 1 cut(s) 293
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 383, 456
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 383, 456
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 383, 456
HaeIII GGCC 3 cut(s) 20, 93, 102
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 293
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 2 cut(s) 322, 463
HpaII CCGG 1 cut(s) 168
HphI GGTGA 3 cut(s) 152, 155, 278
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 3 cut(s) 258, 462, 468
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 2 cut(s) 71, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 2 cut(s) 22, 459
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 1 cut(s) 293
HspAI GCGC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 4 cut(s) 44, 75, 181, 311
Lsp1109I GCAGC 2 cut(s) 394, 442
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 266
MluCI AATT 3 cut(s) 179, 210, 496
MnlI CCTC 4 cut(s) 104, 113, 238, 264
MseI TTAA 3 cut(s) 42, 81, 499
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 168
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 266
NspI RCATGY 1 cut(s) 293
PciI ACATGT 1 cut(s) 289
PfeI GAWTC 2 cut(s) 322, 463
PkrI GCNGC 2 cut(s) 384, 457
PscI ACATGT 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 18
RsaI GTAC 2 cut(s) 150, 493
RsaNI GTAC 2 cut(s) 149, 492
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 3 cut(s) 42, 81, 499
SatI GCNGC 2 cut(s) 383, 456
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 168
SetI ASST 4 cut(s) 175, 243, 387, 396
SfiI GGCCNNNNNGGCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 3 cut(s) 179, 210, 496
StyD4I CCNGG 1 cut(s) 166
TaiI ACGT 1 cut(s) 396
TaqI TCGA 3 cut(s) 206, 230, 286
TasI AATT 3 cut(s) 179, 210, 496
TfiI GAWTC 2 cut(s) 322, 463
Tru1I TTAA 3 cut(s) 42, 81, 499
Tru9I TTAA 3 cut(s) 42, 81, 499
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 2 cut(s) 382, 455
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 1 cut(s) 345
XceI RCATGY 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.