Auxin-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g07400 |
| rosa_chinensis | RchiOBHm_Chr2g0093281 RchiOBHm_Chr4g0400351 |
| rosa_laevigata | RLG00000009199 RLG00000016387 |
| rosa_multiflora | Rmu_co8320973.1_g000001 Rmu_sc0004187.1_g000004 Rmu_sc0018548.1_g000001 Rmu_ssc0000245.1_g000020 |
| rosa_roxburghii | Rroxscaffold_2G00148260 Rroxscaffold_5G00345330 |
| rosa_rugosa | Rorug02G0034300 Rorug06G0094000 |
| rosa_samantha | Rh2AG080500 Rh4AG100800 Rh4DG094500 Rh6CG211600 |
| rosa_wichuraiana | Rw0G019270 Rw2G006650 Rw6G017920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 175 |
| AciI | CCGC | 2 cut(s) | 108, 366 |
| AfaI | GTAC | 2 cut(s) | 200, 631 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 136, 270, 412 |
| AgsI | TTSAA | 1 cut(s) | 192 |
| AjiI | CACGTC | 1 cut(s) | 280 |
| AluBI | AGCT | 3 cut(s) | 95, 323, 523 |
| AluI | AGCT | 3 cut(s) | 95, 323, 523 |
| Ama87I | CYCGRG | 2 cut(s) | 163, 316 |
| AoxI | GGCC | 4 cut(s) | 103, 166, 241, 250 |
| ApeKI | GCWGC | 3 cut(s) | 92, 491, 520 |
| AspS9I | GGNCC | 2 cut(s) | 104, 166 |
| AsuC2I | CCSGG | 2 cut(s) | 317, 318 |
| AsuHPI | GGTGA | 2 cut(s) | 305, 428 |
| AvaI | CYCGRG | 2 cut(s) | 163, 316 |
| BanI | GGYRCC | 1 cut(s) | 175 |
| BbvI | GCAGC | 3 cut(s) | 104, 478, 532 |
| BcnI | CCSGG | 2 cut(s) | 317, 318 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 111, 249 |
| BisI | GCNGC | 3 cut(s) | 93, 492, 521 |
| BlsI | GCNGC | 3 cut(s) | 94, 493, 522 |
| Bme1390I | CCNGG | 2 cut(s) | 317, 318 |
| BmeT110I | CYCGRG | 2 cut(s) | 163, 316 |
| BmgBI | CACGTC | 1 cut(s) | 280 |
| BmgT120I | GGNCC | 2 cut(s) | 104, 166 |
| BmiI | GGNNCC | 2 cut(s) | 106, 177 |
| BmrFI | CCNGG | 2 cut(s) | 317, 318 |
| BpmI | CTGGAG | 1 cut(s) | 459 |
| Bpu10I | CCTNAGC | 1 cut(s) | 597 |
| BpuEI | CTTGAG | 1 cut(s) | 420 |
| BpuMI | CCSGG | 2 cut(s) | 317, 318 |
| BsaBI | GATNNNNATC | 1 cut(s) | 214 |
| BsaJI | CCNNGG | 5 cut(s) | 100, 169, 253, 264, 316 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 136, 270, 412 |
| Bse3DI | GCAATG | 1 cut(s) | 372 |
| Bse8I | GATNNNNATC | 1 cut(s) | 214 |
| BseDI | CCNNGG | 5 cut(s) | 100, 169, 253, 264, 316 |
| BseJI | GATNNNNATC | 1 cut(s) | 214 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 136, 270, 412 |
| BseMI | GCAATG | 1 cut(s) | 372 |
| BseMII | CTCAG | 1 cut(s) | 611 |
| BseXI | GCAGC | 3 cut(s) | 104, 478, 532 |
| BsgI | GTGCAG | 1 cut(s) | 539 |
| BshFI | GGCC | 4 cut(s) | 105, 168, 243, 252 |
| BshNI | GGYRCC | 1 cut(s) | 175 |
| BsiHKCI | CYCGRG | 2 cut(s) | 163, 316 |
| BsiSI | CCGG | 2 cut(s) | 240, 317 |
| BslFI | GGGAC | 1 cut(s) | 284 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 136, 270, 412 |
| BsmFI | GGGAC | 1 cut(s) | 284 |
| BsnI | GGCC | 4 cut(s) | 105, 168, 243, 252 |
| BsoBI | CYCGRG | 2 cut(s) | 163, 316 |
| Bsp143I | GATC | 1 cut(s) | 480 |
| BspACI | CCGC | 2 cut(s) | 108, 366 |
| BspANI | GGCC | 4 cut(s) | 105, 168, 243, 252 |
| BspCNI | CTCAG | 1 cut(s) | 610 |
| BspLI | GGNNCC | 2 cut(s) | 106, 177 |
| BspT107I | GGYRCC | 1 cut(s) | 175 |
| BsrDI | GCAATG | 1 cut(s) | 372 |
| BssECI | CCNNGG | 5 cut(s) | 100, 169, 253, 264, 316 |
| BssMI | GATC | 1 cut(s) | 480 |
| BssT1I | CCWWGG | 3 cut(s) | 100, 169, 264 |
| Bst4CI | ACNGT | 3 cut(s) | 145, 517, 540 |
| Bst6I | CTCTTC | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 2 cut(s) | 112, 180 |
| BstDEI | CTNAG | 1 cut(s) | 597 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 410 |
| BstKTI | GATC | 1 cut(s) | 483 |
| BstMBI | GATC | 1 cut(s) | 480 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 89, 111, 120, 249 |
| BstNSI | RCATGY | 1 cut(s) | 65 |
| BstSCI | CCNGG | 2 cut(s) | 315, 316 |
| BstV1I | GCAGC | 3 cut(s) | 104, 478, 532 |
| BsuRI | GGCC | 4 cut(s) | 105, 168, 243, 252 |
| BtrI | CACGTC | 1 cut(s) | 280 |
| BtsIMutI | CAGTG | 1 cut(s) | 536 |
| Cac8I | GCNNGC | 2 cut(s) | 112, 180 |
| Cfr13I | GGNCC | 2 cut(s) | 104, 166 |
| Cfr9I | CCCGGG | 1 cut(s) | 316 |
| Csp6I | GTAC | 2 cut(s) | 199, 630 |
| CviAII | CATG | 3 cut(s) | 45, 62, 120 |
| CviQI | GTAC | 2 cut(s) | 199, 630 |
| DdeI | CTNAG | 1 cut(s) | 597 |
| DpnI | GATC | 1 cut(s) | 482 |
| DpnII | GATC | 1 cut(s) | 480 |
| DraI | TTTAAA | 1 cut(s) | 544 |
| Eam1104I | CTCTTC | 1 cut(s) | 26 |
| EarI | CTCTTC | 1 cut(s) | 26 |
| Eco130I | CCWWGG | 3 cut(s) | 100, 169, 264 |
| Eco88I | CYCGRG | 2 cut(s) | 163, 316 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 410 |
| EcoO109I | RGGNCCY | 1 cut(s) | 104 |
| EcoT14I | CCWWGG | 3 cut(s) | 100, 169, 264 |
| ErhI | CCWWGG | 3 cut(s) | 100, 169, 264 |
| FaeI | CATG | 3 cut(s) | 48, 65, 123 |
| FaqI | GGGAC | 1 cut(s) | 284 |
| FatI | CATG | 3 cut(s) | 44, 61, 119 |
| FauI | CCCGC | 2 cut(s) | 115, 359 |
| Fnu4HI | GCNGC | 3 cut(s) | 93, 492, 521 |
| Fsp4HI | GCNGC | 3 cut(s) | 93, 492, 521 |
| GluI | GCNGC | 3 cut(s) | 93, 492, 521 |
| GsuI | CTGGAG | 1 cut(s) | 459 |
| HaeIII | GGCC | 4 cut(s) | 105, 168, 243, 252 |
| HapII | CCGG | 2 cut(s) | 240, 317 |
| Hin1II | CATG | 3 cut(s) | 48, 65, 123 |
| HinfI | GANTC | 2 cut(s) | 210, 460 |
| HpaII | CCGG | 2 cut(s) | 240, 317 |
| HphI | GGTGA | 2 cut(s) | 305, 428 |
| Hpy166II | GTNNAC | 1 cut(s) | 160 |
| Hpy188I | TCNGA | 1 cut(s) | 273 |
| Hpy8I | GTNNAC | 1 cut(s) | 160 |
| HpyAV | CCTTC | 1 cut(s) | 341 |
| HpyCH4III | ACNGT | 3 cut(s) | 145, 517, 540 |
| HpyCH4IV | ACGT | 2 cut(s) | 279, 591 |
| HpyCH4V | TGCA | 5 cut(s) | 83, 123, 134, 221, 520 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 89, 111, 120, 249 |
| HpyF3I | CTNAG | 1 cut(s) | 597 |
| HpySE526I | ACGT | 2 cut(s) | 279, 591 |
| Hsp92II | CATG | 3 cut(s) | 48, 65, 123 |
| Kzo9I | GATC | 1 cut(s) | 480 |
| LmnI | GCTCC | 2 cut(s) | 100, 320 |
| LpnPI | CCDG | 9 cut(s) | 96, 144, 192, 253, 330, 419, 449, 489, 584 |
| Lsp1109I | GCAGC | 3 cut(s) | 104, 478, 532 |
| MaeII | ACGT | 2 cut(s) | 279, 591 |
| MaeIII | GTNAC | 2 cut(s) | 139, 416 |
| MalI | GATC | 1 cut(s) | 482 |
| MboI | GATC | 1 cut(s) | 480 |
| MboII | GAAGA | 2 cut(s) | 13, 422 |
| MluCI | AATT | 3 cut(s) | 329, 360, 634 |
| MmeI | TCCRAC | 1 cut(s) | 251 |
| MnlI | CCTC | 6 cut(s) | 29, 254, 263, 337, 388, 444 |
| MseI | TTAA | 3 cut(s) | 231, 543, 637 |
| MspI | CCGG | 2 cut(s) | 240, 317 |
| MspR9I | CCNGG | 2 cut(s) | 317, 318 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 89, 111, 120, 249 |
| NciI | CCSGG | 2 cut(s) | 317, 318 |
| NdeII | GATC | 1 cut(s) | 480 |
| NlaIII | CATG | 3 cut(s) | 48, 65, 123 |
| NlaIV | GGNNCC | 2 cut(s) | 106, 177 |
| NmuCI | GTSAC | 1 cut(s) | 416 |
| NspI | RCATGY | 1 cut(s) | 65 |
| PfeI | GAWTC | 2 cut(s) | 210, 460 |
| PkrI | GCNGC | 3 cut(s) | 94, 493, 522 |
| PspN4I | GGNNCC | 2 cut(s) | 106, 177 |
| PspPI | GGNCC | 2 cut(s) | 104, 166 |
| RsaI | GTAC | 2 cut(s) | 200, 631 |
| RsaNI | GTAC | 2 cut(s) | 199, 630 |
| SaqAI | TTAA | 3 cut(s) | 231, 543, 637 |
| SatI | GCNGC | 3 cut(s) | 93, 492, 521 |
| Sau3AI | GATC | 1 cut(s) | 480 |
| Sau96I | GGNCC | 2 cut(s) | 104, 166 |
| ScrFI | CCNGG | 2 cut(s) | 317, 318 |
| SetI | ASST | 9 cut(s) | 97, 141, 200, 282, 325, 393, 525, 594, 603 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 249 |
| SmaI | CCCGGG | 1 cut(s) | 318 |
| SmlI | CTYRAG | 1 cut(s) | 435 |
| SmoI | CTYRAG | 1 cut(s) | 435 |
| Sse9I | AATT | 3 cut(s) | 329, 360, 634 |
| SsiI | CCGC | 2 cut(s) | 108, 366 |
| StyD4I | CCNGG | 2 cut(s) | 315, 316 |
| StyI | CCWWGG | 3 cut(s) | 100, 169, 264 |
| TaaI | ACNGT | 3 cut(s) | 145, 517, 540 |
| TaiI | ACGT | 2 cut(s) | 282, 594 |
| TaqI | TCGA | 2 cut(s) | 356, 380 |
| TasI | AATT | 3 cut(s) | 329, 360, 634 |
| TfiI | GAWTC | 2 cut(s) | 210, 460 |
| Tru1I | TTAA | 3 cut(s) | 231, 543, 637 |
| Tru9I | TTAA | 3 cut(s) | 231, 543, 637 |
| TscAI | CASTG | 1 cut(s) | 543 |
| TseFI | GTSAC | 1 cut(s) | 416 |
| TseI | GCWGC | 3 cut(s) | 92, 491, 520 |
| Tsp45I | GTSAC | 1 cut(s) | 416 |
| TspDTI | ATGAA | 4 cut(s) | 25, 33, 361, 593 |
| TspMI | CCCGGG | 1 cut(s) | 316 |
| TspRI | CASTG | 1 cut(s) | 543 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 410 |
| XceI | RCATGY | 1 cut(s) | 65 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 167 |
| XmaI | CCCGGG | 1 cut(s) | 316 |