Rh4DG094500

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011507
Physical Location & Seq
Forward (+)
14231480 .. 14232845
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG094500.1

Sequence Viewer

Length: 639 bp
ATGATTTCCCCTATCTTCCTCTTTGTGCTCTTTTTCATTCTTTCATGTTCCTATGCTTCACATGTCCAAGACTTCTGTGTTGCAGATTACGCAGCTCCCCAAGGCCCCGTAGGCTACTCATGCAAAGACCCTGTAAATGTTACCGTAGATGATTTCGTCTACTCGGGCCTTGGGGTGCCTGCTAACACTTCAAATATCTACAAGTTTGGATTCACATCTGCATTTGCTTTTAACTTCTCCGGACTCAATGGCCTCGGCGTTTCCTTGGGTCGCGCAGACGTGGAAGTTGGCGGTGTTGTCCCCATCCACTCTCACCCCGGAGCTACTGAACTGGTGGTTATTGAGGAAGGAAGTTCGATAATTGGCGGGTTCATTGCCTCGAACAACAAGGTTTATCAAAAGCTCCTGAACAAGGGTGACACTATGGTTCTTCCTCAAGGCTTGTATCACTTCTTTGTGAATCAGGGTAAAACTCCAGCGGTCATATATGCTGCTTTCAGTAGTGAAAGCCCAACCGTGCAGCTTTTGGACACATCACTGTTTAAAAATGATTTGGCTACTGATATCATAGCAAAAACTACTTTACTTGACGCTGCTCAGATTCAGAAACTCAAAAAACTCTTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

212

Amino Acids

22.62

Weight (kDa)

5.44

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 56 - 201 4.4e-29 Cupin
Cupin_2 PF07883 92 - 164 5e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 273
AccIII TCCGGA 1 cut(s) 239
AciI CCGC 3 cut(s) 291, 366, 479
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 1 cut(s) 192
AjiI CACGTC 1 cut(s) 280
AluBI AGCT 4 cut(s) 95, 323, 403, 523
AluI AGCT 4 cut(s) 95, 323, 403, 523
Alw21I GWGCWC 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 163
Aor13HI TCCGGA 1 cut(s) 239
AoxI GGCC 3 cut(s) 103, 166, 250
ApeKI GCWGC 4 cut(s) 92, 491, 520, 593
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 104, 166
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 305, 428
AvaI CYCGRG 1 cut(s) 163
BanI GGYRCC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 4 cut(s) 104, 478, 532, 580
BccI CCATC 1 cut(s) 311
BcnI CCSGG 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 4 cut(s) 93, 492, 521, 594
BlsI GCNGC 4 cut(s) 94, 493, 522, 595
Bme1390I CCNGG 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 163
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 104, 166
BmiI GGNNCC 2 cut(s) 106, 177
BmrFI CCNGG 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 214
BsaJI CCNNGG 5 cut(s) 100, 169, 253, 264, 316
BsaWI WCCGGW 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 214
BseAI TCCGGA 1 cut(s) 239
BseDI CCNNGG 5 cut(s) 100, 169, 253, 264, 316
BseGI GGATG 1 cut(s) 303
BseJI GATNNNNATC 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 1 cut(s) 336
BseXI GCAGC 4 cut(s) 104, 478, 532, 580
BsgI GTGCAG 1 cut(s) 539
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 3 cut(s) 105, 168, 252
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 2 cut(s) 240, 318
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 412
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 3 cut(s) 105, 168, 252
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 30
Bsp13I TCCGGA 1 cut(s) 239
BspACI CCGC 3 cut(s) 291, 366, 479
BspANI GGCC 3 cut(s) 105, 168, 252
BspCNI CTCAG 1 cut(s) 610
BspEI TCCGGA 1 cut(s) 239
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 106, 177
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 5 cut(s) 100, 169, 253, 264, 316
BssT1I CCWWGG 3 cut(s) 100, 169, 264
Bst4CI ACNGT 3 cut(s) 145, 517, 540
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 597
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 303
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 275
BstMWI GCNNNNNNNGC 3 cut(s) 89, 111, 120
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 316
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 4 cut(s) 104, 478, 532, 580
BsuRI GGCC 3 cut(s) 105, 168, 252
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 536
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 104, 166
CseI GACGC 1 cut(s) 599
Csp6I GTAC 1 cut(s) 630
CviAII CATG 3 cut(s) 45, 62, 120
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 1 cut(s) 597
DraI TTTAAA 1 cut(s) 544
Eco130I CCWWGG 3 cut(s) 100, 169, 264
Eco32I GATATC 1 cut(s) 565
Eco88I CYCGRG 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 104
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 3 cut(s) 100, 169, 264
ErhI CCWWGG 3 cut(s) 100, 169, 264
FaeI CATG 3 cut(s) 48, 65, 123
FaiI YATR 9 cut(s) 46, 54, 63, 121, 425, 485, 487, 489, 569
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 44, 61, 119
FauI CCCGC 1 cut(s) 359
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 4 cut(s) 93, 492, 521, 594
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 4 cut(s) 93, 492, 521, 594
GlaI GCGC 1 cut(s) 274
GluI GCNGC 4 cut(s) 93, 492, 521, 594
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 3 cut(s) 105, 168, 252
HapII CCGG 2 cut(s) 240, 318
HgaI GACGC 1 cut(s) 599
HhaI GCGC 1 cut(s) 275
Hin1II CATG 3 cut(s) 48, 65, 123
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 4 cut(s) 210, 243, 460, 601
HpaII CCGG 2 cut(s) 240, 318
HphI GGTGA 2 cut(s) 305, 428
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 600, 606
Hpy188III TCNNGA 2 cut(s) 240, 406
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 3 cut(s) 145, 517, 540
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 4 cut(s) 83, 123, 221, 520
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 111, 120
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 3 cut(s) 48, 65, 123
HspAI GCGC 1 cut(s) 273
Kpn2I TCCGGA 1 cut(s) 239
LmnI GCTCC 3 cut(s) 100, 320, 408
LpnPI CCDG 8 cut(s) 144, 192, 253, 317, 331, 419, 449, 489
Lsp1109I GCAGC 4 cut(s) 104, 478, 532, 580
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 139, 416
MboII GAAGA 2 cut(s) 7, 422
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 360, 634
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 5 cut(s) 29, 263, 337, 388, 444
MroI TCCGGA 1 cut(s) 239
MseI TTAA 3 cut(s) 231, 543, 637
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 240, 318
MspR9I CCNGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 89, 111, 120
NciI CCSGG 1 cut(s) 318
NlaIII CATG 3 cut(s) 48, 65, 123
NlaIV GGNNCC 2 cut(s) 106, 177
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 416
NspI RCATGY 1 cut(s) 65
PciI ACATGT 1 cut(s) 61
PfeI GAWTC 3 cut(s) 210, 460, 601
PkrI GCNGC 4 cut(s) 94, 493, 522, 595
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PscI ACATGT 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 106, 177
PspPI GGNCC 2 cut(s) 104, 166
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
SaqAI TTAA 3 cut(s) 231, 543, 637
SatI GCNGC 4 cut(s) 93, 492, 521, 594
Sau96I GGNCC 2 cut(s) 104, 166
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 30
SetI ASST 6 cut(s) 97, 282, 325, 393, 405, 525
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
Sse9I AATT 2 cut(s) 360, 634
SsiI CCGC 3 cut(s) 291, 366, 479
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 3 cut(s) 100, 169, 264
TaaI ACNGT 3 cut(s) 145, 517, 540
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 356, 380
TasI AATT 2 cut(s) 360, 634
TfiI GAWTC 3 cut(s) 210, 460, 601
Tru1I TTAA 3 cut(s) 231, 543, 637
Tru9I TTAA 3 cut(s) 231, 543, 637
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 4 cut(s) 92, 491, 520, 593
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 3 cut(s) 25, 33, 361
TspRI CASTG 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 410
XceI RCATGY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.