Rorug06G0094000

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011507
Physical Location & Seq
Forward (+)
12492369 .. 12493737
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0094000.1

Sequence Viewer

Length: 774 bp
ATGGAGAGCCAAGAAGCTTGTGTGATTGAGATCCGACCTTCTTTTTCTTCAAAGAGGGCTTTGGAGAATTGGAGGAAGCTATCTGCTGCCCTCAGGAGCCCCAACAAGCGACAGTTTCTCTTCAACCCTGCGGCTCGCTCCCTTTGGATTAAGCAGCAGGAGAAACACATTCAGACCGCATTGCAATTAGTTAATGCTCGCCAGGATCGGTTGTCTAACAGCAGGTTGCCTTTGCTTGGCAGTAGTTCCGGTGACGAGTCAAGGCACACAACAAAGGCTACTTCAACAGTATGGGTCTTTTTACTCACCAACCTCGGCCTAGAGACATTATCGGCCGTCTTTGATCAAATTGCCTCTCCAAGCAAGCCTGACTATGCACTATTCGGAATGGTGTTGGCGATTTTAGCTGTGCTCATTTGCATCTTGGAGCTCATTCACAAGGGTAAAAAGGAGGGAGTTGAGCTGAAAAGATGGGGAAAGTTGTGCTGGTTTTATTATCCACCTCCCAATGAATCACTTTTTGGTACTTTCCCAGATATTTGTGGATTAGTCATTGCCATCTCACAGTATATTTGCTCCACTGTTCAGTATGTTTATCTGTGCAGGCATTCTAATAACCCCATCAAACTATCCGTTTTACCGGCCATCTTTCTTATTTGTTTGGCTGGTTCAACACTAATCAGGAACAAAAGCTACACCACAGATGAAACCTTCAAACATACTACTCATCATATTACAAAGATTAATTTTTGTAGATTTTGGCATTCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

257

Amino Acids

29.19

Weight (kDa)

9.45

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 213
AciI CCGC 2 cut(s) 131, 177
AclWI GGATC 2 cut(s) 25, 213
AcoI YGGCCR 2 cut(s) 333, 642
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 5 cut(s) 51, 124, 285, 672, 715
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 6 cut(s) 17, 79, 407, 430, 463, 693
AluI AGCT 6 cut(s) 17, 79, 407, 430, 463, 693
Alw21I GWGCWC 2 cut(s) 414, 432
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 2 cut(s) 25, 213
AoxI GGCC 3 cut(s) 316, 333, 642
ApeKI GCWGC 2 cut(s) 86, 154
AseI ATTAAT 1 cut(s) 744
AsuHPI GGTGA 2 cut(s) 263, 298
AxyI CCTNAGG 1 cut(s) 92
BanII GRGCYC 2 cut(s) 101, 432
Bbv12I GWGCWC 2 cut(s) 414, 432
BbvI GCAGC 2 cut(s) 73, 166
BccI CCATC 4 cut(s) 465, 566, 629, 653
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 3 cut(s) 87, 132, 155
BlsI GCNGC 3 cut(s) 88, 133, 156
Bme1390I CCNGG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 640
Bse21I CCTNAGG 1 cut(s) 92
Bse3DI GCAATG 2 cut(s) 179, 552
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 2 cut(s) 179, 552
BseMII CTCAG 1 cut(s) 106
BseX3I CGGCCG 1 cut(s) 333
BseXI GCAGC 2 cut(s) 73, 166
BsgI GTGCAG 1 cut(s) 622
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 3 cut(s) 318, 335, 644
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 2 cut(s) 414, 432
BsiSI CCGG 2 cut(s) 249, 641
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 317
BsmI GAATGC 2 cut(s) 607, 763
BsnI GGCC 3 cut(s) 318, 335, 644
Bsp1286I GDGCHC 3 cut(s) 101, 414, 432
Bsp143I GATC 3 cut(s) 30, 205, 343
BspACI CCGC 2 cut(s) 131, 177
BspANI GGCC 3 cut(s) 318, 335, 644
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 98
BspMI ACCTGC 1 cut(s) 213
BspPI GGATC 2 cut(s) 25, 213
BsrDI GCAATG 2 cut(s) 179, 552
BsrFI RCCGGY 1 cut(s) 640
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 3 cut(s) 30, 205, 343
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 4 cut(s) 114, 289, 567, 583
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 4 cut(s) 136, 199, 365, 605
BstDEI CTNAG 1 cut(s) 92
BstKTI GATC 3 cut(s) 33, 208, 346
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 3 cut(s) 30, 205, 343
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 73, 166
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BstZI CGGCCG 1 cut(s) 333
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 3 cut(s) 318, 335, 644
BtsIMutI CAGTG 1 cut(s) 579
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 4 cut(s) 136, 199, 365, 605
Cfr10I RCCGGY 1 cut(s) 640
Csp6I GTAC 1 cut(s) 525
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 1 cut(s) 92
DpnI GATC 3 cut(s) 32, 207, 345
DpnII GATC 3 cut(s) 30, 205, 343
EaeI YGGCCR 2 cut(s) 333, 642
EagI CGGCCG 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 430
EclXI CGGCCG 1 cut(s) 333
Eco24I GRGCYC 2 cut(s) 101, 432
Eco52I CGGCCG 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 430
Eco81I CCTNAGG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 2 cut(s) 101, 432
FaiI YATR 6 cut(s) 292, 375, 570, 591, 720, 732
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 3 cut(s) 87, 132, 155
FriOI GRGCYC 2 cut(s) 101, 432
Fsp4HI GCNGC 3 cut(s) 87, 132, 155
FspBI CTAG 1 cut(s) 320
GluI GCNGC 3 cut(s) 87, 132, 155
HaeIII GGCC 3 cut(s) 318, 335, 644
HapII CCGG 2 cut(s) 249, 641
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 257, 512
HpaII CCGG 2 cut(s) 249, 641
HphI GGTGA 2 cut(s) 263, 298
Hpy188I TCNGA 3 cut(s) 35, 174, 386
Hpy188III TCNNGA 2 cut(s) 94, 682
HpyAV CCTTC 2 cut(s) 48, 721
HpyCH4III ACNGT 4 cut(s) 114, 289, 567, 583
HpyCH4V TGCA 4 cut(s) 184, 377, 420, 603
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 30, 205, 343
LmnI GCTCC 4 cut(s) 96, 143, 427, 581
Lsp1109I GCAGC 2 cut(s) 73, 166
LweI GCATC 1 cut(s) 429
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 251
MalI GATC 3 cut(s) 32, 207, 345
MboI GATC 3 cut(s) 30, 205, 343
MboII GAAGA 2 cut(s) 39, 112
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 3 cut(s) 101, 414, 432
MluCI AATT 4 cut(s) 67, 185, 348, 745
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 7 cut(s) 48, 66, 101, 323, 364, 445, 513
MseI TTAA 3 cut(s) 150, 192, 744
MspI CCGG 2 cut(s) 249, 641
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 2 cut(s) 607, 763
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 3 cut(s) 30, 205, 343
NlaIV GGNNCC 1 cut(s) 98
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 251
PctI GAATGC 2 cut(s) 607, 763
PfeI GAWTC 1 cut(s) 512
PkrI GCNGC 3 cut(s) 88, 133, 156
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 744
Psp124BI GAGCTC 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 98
PsrI GAACNNNNNNTAC 2 cut(s) 677, 709
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 3 cut(s) 150, 192, 744
SatI GCNGC 3 cut(s) 87, 132, 155
Sau3AI GATC 3 cut(s) 30, 205, 343
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 3 cut(s) 101, 414, 432
SfaNI GCATC 1 cut(s) 429
Sse9I AATT 4 cut(s) 67, 185, 348, 745
SsiI CCGC 2 cut(s) 131, 177
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 4 cut(s) 114, 289, 567, 583
TasI AATT 4 cut(s) 67, 185, 348, 745
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 3 cut(s) 150, 192, 744
Tru9I TTAA 3 cut(s) 150, 192, 744
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 2 cut(s) 86, 154
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 525, 720
TspGWI ACGGA 1 cut(s) 622
TspRI CASTG 1 cut(s) 586
VspI ATTAAT 1 cut(s) 744
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.