Rh6CG211600

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011507
Physical Location & Seq
Reverse (-)
35185255 .. 35188184
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG211600.1

Sequence Viewer

Length: 318 bp
ATGATTTCGTCCACTCGGGCCTTAGGGCGCCTGCTAACACTTAACATATACAAGTTTGGGTTCACAACTGCATTTGCTTTTAACTTCTCTAGCCTCAATGGCCTCATCATTTCTATGGGTCGCGCAGATGTGGAAGTTGGCGATGTTGTACCCATCCACTCTCACCCCGGAGCTACCAAACTGGTGGTTATTGGGGAAGGAAGTTCGATAATTGGTGGGTTTAATGCCTCGAACAACAAGGTTTATCAAAAGCCCCTGAACAAGGGTGACACTATGGTTCTATGCATACTTGATGATCTGAATAGTAGGACTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

105

Amino Acids

11.25

Weight (kDa)

7.92

Isoelectric Point (pI)

22.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 21 - 94 1.4e-09 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 27
AccII CGCG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 28
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 2 cut(s) 18, 100
AspLEI GCGC 2 cut(s) 30, 125
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 155, 278
AvaI CYCGRG 1 cut(s) 15
AxyI CCTNAGG 1 cut(s) 22
BanI GGYRCC 1 cut(s) 27
BccI CCATC 1 cut(s) 161
BcnI CCSGG 1 cut(s) 168
BfaI CTAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 31
BglI GCCNNNNNGGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 186
Bse21I CCTNAGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 20, 102
BshNI GGYRCC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 262
BsnI GGCC 2 cut(s) 20, 102
BsoBI CYCGRG 1 cut(s) 15
Bsp143I GATC 1 cut(s) 295
BspANI GGCC 2 cut(s) 20, 102
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 27
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 2 cut(s) 30, 125
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 123
BstXI CCANNNNNNTGG 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 22
BsuRI GGCC 2 cut(s) 20, 102
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 32
CfoI GCGC 2 cut(s) 30, 125
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 149
CviJI RGCY 5 cut(s) 20, 93, 102, 173, 253
CviKI_1 RGCY 5 cut(s) 20, 93, 102, 173, 253
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 22
DinI GGCGCC 1 cut(s) 29
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eco81I CCTNAGG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoT22I ATGCAT 1 cut(s) 287
EgeI GGCGCC 1 cut(s) 29
EheI GGCGCC 1 cut(s) 29
FaiI YATR 6 cut(s) 47, 49, 116, 275, 283, 287
FokI GGATG 1 cut(s) 140
FspBI CTAG 1 cut(s) 90
GlaI GCGC 2 cut(s) 29, 124
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 2 cut(s) 20, 102
HapII CCGG 1 cut(s) 168
HhaI GCGC 2 cut(s) 30, 125
Hin1I GRCGYC 1 cut(s) 28
Hin6I GCGC 2 cut(s) 28, 123
HinP1I GCGC 2 cut(s) 28, 123
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 155, 278
Hpy166II GTNNAC 2 cut(s) 12, 63
Hpy188I TCNGA 1 cut(s) 300
Hpy8I GTNNAC 2 cut(s) 12, 63
HpyAV CCTTC 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 71, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 28
HspAI GCGC 2 cut(s) 28, 123
KasI GGCGCC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 4 cut(s) 44, 167, 181, 269
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MluCI AATT 1 cut(s) 210
Mly113I GGCGCC 1 cut(s) 28
MnlI CCTC 3 cut(s) 104, 113, 238
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 3 cut(s) 42, 81, 222
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 99
NarI GGCGCC 1 cut(s) 28
NciI CCSGG 1 cut(s) 168
NdeII GATC 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 287
PluTI GGCGCC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 18
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 3 cut(s) 42, 81, 222
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 168
SetI ASST 2 cut(s) 175, 243
SfoI GGCGCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 1 cut(s) 210
SspDI GGCGCC 1 cut(s) 27
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 166
TaqI TCGA 2 cut(s) 206, 230
TasI AATT 1 cut(s) 210
Tru1I TTAA 3 cut(s) 42, 81, 222
Tru9I TTAA 3 cut(s) 42, 81, 222
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 260
XspI CTAG 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.