Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011507

Physical Location & Seq

Genomic Coordinates Forward (+)

85922287 .. 85922925

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATTTCCCCTATCTTCCTCTTCGTGCTTTCTTTTATTCTTTCATGTTCCTATGCTTTACACGTCCAAGACTTCTGTGTTGCAGACTACGCAGCTCCCCAAGGGCCCACAGGCTACTCATGCAAAGACCCTGCAAAGGTTACCGTTGATGATTTCGTCCACTCGGGCCTTGGGGTGCCTGCTAACACTTCAAACATGTACAAGTTTGGATTCACAGCTGCATTTGCTTTTAACTTCCCCGGCCTCAATGGCCTTGGCGTTTCCATGGGTCGCGCAGACGTGGAAGTAGGCGGTGTTGTCCCTATCCACTCTCACCCCGGAGCTACCGAACTAGTGGTTATTGGGGAAGGAAGTTCGATAATTGGCGGGTTCATTGCCTCGAACAACAAGGTTTATCAAAAGCCCCTGAACAAGGGTGACACTATGGTTCTTCCTCAAGGCTTGTATCACTTCTTTGTGAATCAGGGTAAAACTCCGGCGGTCATATATGCTTCTTTCAGTAGTGAAAGCCCAACTGTGCAACTTTTGGACACATCACTGTTTACAAATGATTTGGCTACTGATATCATTGCAAAGACTACTTTACTTGATGTTGCTCAGATTCAGAAACTCAAAAAACTCTTTGGTGGTACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

212

Amino Acids

22.51

Weight (kDa)

5.89

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	56 - 201	4.4e-30	Cupin
Cupin_2	PF07883	92 - 164	1.1e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07400
rosa_chinensis	RchiOBHm_Chr2g0093281 RchiOBHm_Chr4g0400351
rosa_laevigata	RLG00000009199 RLG00000016387
rosa_multiflora	Rmu_co8320973.1_g000001 Rmu_sc0004187.1_g000004 Rmu_sc0018548.1_g000001 Rmu_ssc0000245.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148260 Rroxscaffold_5G00345330
rosa_rugosa	Rorug02G0034300 Rorug06G0094000
rosa_samantha	Rh2AG080500 Rh4AG100800 Rh4DG094500 Rh6CG211600
rosa_wichuraiana	Rw0G019270 Rw2G006650 Rw6G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	1 cut(s)	273
AciI	CCGC	3 cut(s)	291, 366, 479
AfaI	GTAC	2 cut(s)	200, 631
AfiI	CCNNNNNNNGG	2 cut(s)	136, 412
AflIII	ACRYGT	2 cut(s)	61, 195
AgsI	TTSAA	1 cut(s)	192
AhlI	ACTAGT	1 cut(s)	331
AjiI	CACGTC	2 cut(s)	64, 280
AluBI	AGCT	3 cut(s)	95, 218, 323
AluI	AGCT	3 cut(s)	95, 218, 323
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	4 cut(s)	104, 166, 241, 250
ApaI	GGGCCC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	92, 218
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	104, 105, 166
AsuC2I	CCSGG	2 cut(s)	240, 318
AsuHPI	GGTGA	2 cut(s)	305, 428
AvaI	CYCGRG	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	104, 205
BcnI	CCSGG	2 cut(s)	240, 318
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	1 cut(s)	332
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	2 cut(s)	93, 219
BlsI	GCNGC	2 cut(s)	94, 220
Bme1390I	CCNGG	2 cut(s)	240, 318
BmeT110I	CYCGRG	1 cut(s)	163
BmgBI	CACGTC	2 cut(s)	64, 280
BmgT120I	GGNCC	3 cut(s)	104, 105, 166
BmiI	GGNNCC	2 cut(s)	106, 177
BmrFI	CCNGG	2 cut(s)	240, 318
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	2 cut(s)	240, 318
BsaJI	CCNNGG	6 cut(s)	100, 169, 238, 253, 264, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 412
Bse3DI	GCAATG	2 cut(s)	372, 567
BseDI	CCNNGG	6 cut(s)	100, 169, 238, 253, 264, 316
BseLI	CCNNNNNNNGG	2 cut(s)	136, 412
BseMI	GCAATG	2 cut(s)	372, 567
BseMII	CTCAG	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	104, 205
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	106, 168, 243, 252
BshNI	GGYRCC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	240, 318, 476
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	136, 412
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	106, 168, 243, 252
BsoBI	CYCGRG	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	291, 366, 479
BspANI	GGCC	4 cut(s)	106, 168, 243, 252
BspCNI	CTCAG	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	106, 177
BspT107I	GGYRCC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	372, 567
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	6 cut(s)	100, 169, 238, 253, 264, 316
BssT1I	CCWWGG	4 cut(s)	100, 169, 253, 264
Bst4CI	ACNGT	3 cut(s)	145, 517, 540
Bst6I	CTCTTC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 120, 224, 249
BstNSI	RCATGY	1 cut(s)	199
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	238, 316
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	104, 205
BsuRI	GGCC	4 cut(s)	106, 168, 243, 252
BtgI	CCRYGG	1 cut(s)	264
BtrI	CACGTC	2 cut(s)	64, 280
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	104, 105, 166
Csp6I	GTAC	2 cut(s)	199, 630
CviAII	CATG	4 cut(s)	45, 120, 196, 265
CviQI	GTAC	2 cut(s)	199, 630
DdeI	CTNAG	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	4 cut(s)	100, 169, 253, 264
Eco24I	GRGCYC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	565
Eco88I	CYCGRG	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	4 cut(s)	100, 169, 253, 264
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	4 cut(s)	100, 169, 253, 264
FaeI	CATG	4 cut(s)	48, 123, 199, 268
FaiI	YATR	9 cut(s)	46, 54, 121, 197, 266, 425, 485, 487, 489
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	4 cut(s)	44, 119, 195, 264
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	2 cut(s)	93, 219
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	93, 219
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	93, 219
HaeIII	GGCC	4 cut(s)	106, 168, 243, 252
HapII	CCGG	3 cut(s)	240, 318, 476
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	48, 123, 199, 268
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	3 cut(s)	210, 460, 601
HpaII	CCGG	3 cut(s)	240, 318, 476
HphI	GGTGA	2 cut(s)	305, 428
Hpy166II	GTNNAC	2 cut(s)	160, 543
Hpy188I	TCNGA	2 cut(s)	600, 606
Hpy8I	GTNNAC	2 cut(s)	160, 543
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	3 cut(s)	145, 517, 540
HpyCH4IV	ACGT	2 cut(s)	63, 279
HpyCH4V	TGCA	6 cut(s)	83, 123, 134, 221, 520, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 120, 224, 249
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	2 cut(s)	63, 279
Hsp92II	CATG	4 cut(s)	48, 123, 199, 268
HspAI	GCGC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	100, 320
LpnPI	CCDG	8 cut(s)	96, 144, 192, 253, 331, 419, 449, 489
Lsp1109I	GCAGC	2 cut(s)	104, 205
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	63, 279
MaeIII	GTNAC	2 cut(s)	139, 416
MboII	GAAGA	3 cut(s)	7, 13, 422
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	360, 634
MnlI	CCTC	4 cut(s)	29, 254, 388, 444
MseI	TTAA	2 cut(s)	231, 637
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	3 cut(s)	240, 318, 476
MspR9I	CCNGG	2 cut(s)	240, 318
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	4 cut(s)	89, 120, 224, 249
NciI	CCSGG	2 cut(s)	240, 318
NcoI	CCATGG	1 cut(s)	264
NlaIII	CATG	4 cut(s)	48, 123, 199, 268
NlaIV	GGNNCC	2 cut(s)	106, 177
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	199
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	210, 460, 601
PkrI	GCNGC	2 cut(s)	94, 220
PscI	ACATGT	1 cut(s)	195
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	106, 177
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	3 cut(s)	104, 105, 166
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	200, 631
RsaNI	GTAC	2 cut(s)	199, 630
SaqAI	TTAA	2 cut(s)	231, 637
SatI	GCNGC	2 cut(s)	93, 219
Sau96I	GGNCC	3 cut(s)	104, 105, 166
ScrFI	CCNGG	2 cut(s)	240, 318
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	7 cut(s)	66, 97, 141, 220, 282, 325, 393
SfiI	GGCCNNNNNGGCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SpeI	ACTAGT	1 cut(s)	331
Sse9I	AATT	2 cut(s)	360, 634
SsiI	CCGC	3 cut(s)	291, 366, 479
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	238, 316
StyI	CCWWGG	4 cut(s)	100, 169, 253, 264
TaaI	ACNGT	3 cut(s)	145, 517, 540
TaiI	ACGT	2 cut(s)	66, 282
TaqI	TCGA	2 cut(s)	356, 380
TasI	AATT	2 cut(s)	360, 634
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	3 cut(s)	210, 460, 601
Tru1I	TTAA	2 cut(s)	231, 637
Tru9I	TTAA	2 cut(s)	231, 637
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	92, 218
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	33, 361
TspRI	CASTG	1 cut(s)	543
XagI	CCTNNNNNAGG	1 cut(s)	410
XceI	RCATGY	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.