Rw0G019270

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00865
OG0011507
Physical Location & Seq
Forward (+)
60908 .. 61546
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019270.1

Sequence Viewer

Length: 639 bp
ATGAGTTCCCCTATCTGCGTCTTCGTGTTTTCTTTCATTTTTTCATGTTCCTATGCTTCGCATGTCCAAGACTTCTGTGTTGCAGACTACACAGCTCCCCAAGGCCCCGCAGGCTACTCATGCAAAGACCCTGCAAAGGTTACTATTGATGATTTCGTCCACTCAGGCCTTGGGGTGCCTGCTAACACTTCAAATAGGTACAAGTTCGGATTCACATCTGCATTTGCTATTAACTTCTCCGGCCTCAATGGCCTCGGCGTTTCCTTGGGTCGGACAGACATGGAAGTTGGTGGTGTTGTCCCCATCCACTCTCACCCGGGAGCCACCGAACTGGTAGTTATTGAGGAAGGAAGTTCGATAATTGGCGGGTTCATTGCCTCGAACAACAAGGTTTATCAAAAGCCCCTGAATAAGGGTGACACTATGGTTCTTCCTCAAGGCTTGTATCACTTCTTTGTGAATCAGGGTAAAACTCCAGCGGTCATATATGCTGCTTTCAATAGTGAAAGCCCAACCGTGCAGCTTTTGGACACATCACTGTTTAAAAATGGTTTGGCTACTGATATCATAGCAAAAACTACTTTACTTGACGTTGCTCAGATTCAGAAACTCAAAAAACTCTTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

212

Amino Acids

22.57

Weight (kDa)

6.49

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 56 - 201 6.8e-30 Cupin
Cupin_2 PF07883 92 - 164 1.6e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AciI CCGC 3 cut(s) 108, 366, 479
AfaI GTAC 2 cut(s) 200, 631
AfiI CCNNNNNNNGG 3 cut(s) 136, 270, 412
AgsI TTSAA 2 cut(s) 192, 499
AluBI AGCT 2 cut(s) 95, 523
AluI AGCT 2 cut(s) 95, 523
Ama87I CYCGRG 1 cut(s) 316
AoxI GGCC 4 cut(s) 103, 166, 241, 250
ApeKI GCWGC 2 cut(s) 491, 520
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 2 cut(s) 317, 318
AsuHPI GGTGA 2 cut(s) 305, 428
AvaI CYCGRG 1 cut(s) 316
BanI GGYRCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 478, 532
BccI CCATC 1 cut(s) 311
BcnI CCSGG 2 cut(s) 317, 318
BglI GCCNNNNNGGC 2 cut(s) 111, 249
BisI GCNGC 2 cut(s) 492, 521
BlsI GCNGC 2 cut(s) 493, 522
Bme1390I CCNGG 2 cut(s) 317, 318
BmeT110I CYCGRG 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 3 cut(s) 106, 177, 322
BmrFI CCNGG 2 cut(s) 317, 318
BpiI GAAGAC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 2 cut(s) 317, 318
BsaBI GATNNNNATC 1 cut(s) 214
BsaJI CCNNGG 5 cut(s) 100, 169, 253, 264, 316
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 270, 412
Bse1I ACTGG 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 214
BseDI CCNNGG 5 cut(s) 100, 169, 253, 264, 316
BseGI GGATG 1 cut(s) 303
BseJI GATNNNNATC 1 cut(s) 214
BseLI CCNNNNNNNGG 3 cut(s) 136, 270, 412
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 2 cut(s) 177, 611
BseNI ACTGG 1 cut(s) 336
BseXI GCAGC 2 cut(s) 478, 532
BsgI GTGCAG 1 cut(s) 539
BshFI GGCC 4 cut(s) 105, 168, 243, 252
BshNI GGYRCC 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 316
BsiSI CCGG 2 cut(s) 240, 317
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 136, 270, 412
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 4 cut(s) 105, 168, 243, 252
BsoBI CYCGRG 1 cut(s) 316
BspACI CCGC 3 cut(s) 108, 366, 479
BspANI GGCC 4 cut(s) 105, 168, 243, 252
BspCNI CTCAG 2 cut(s) 176, 610
BspLI GGNNCC 3 cut(s) 106, 177, 322
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 5 cut(s) 100, 169, 253, 264, 316
BssT1I CCWWGG 3 cut(s) 100, 169, 264
Bst4CI ACNGT 2 cut(s) 517, 540
BstC8I GCNNGC 2 cut(s) 112, 180
BstDEI CTNAG 2 cut(s) 163, 597
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 111, 120, 249
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 2 cut(s) 315, 316
BstV1I GCAGC 2 cut(s) 478, 532
BstV2I GAAGAC 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 331
BsuRI GGCC 4 cut(s) 105, 168, 243, 252
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 112, 180
Cfr13I GGNCC 1 cut(s) 104
Cfr9I CCCGGG 1 cut(s) 316
CseI GACGC 1 cut(s) 7
Csp6I GTAC 2 cut(s) 199, 630
CviAII CATG 4 cut(s) 45, 62, 120, 280
CviQI GTAC 2 cut(s) 199, 630
DdeI CTNAG 2 cut(s) 163, 597
DraI TTTAAA 1 cut(s) 544
Eco130I CCWWGG 3 cut(s) 100, 169, 264
Eco147I AGGCCT 1 cut(s) 168
Eco32I GATATC 1 cut(s) 565
Eco88I CYCGRG 1 cut(s) 316
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 104
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 3 cut(s) 100, 169, 264
ErhI CCWWGG 3 cut(s) 100, 169, 264
FaeI CATG 4 cut(s) 48, 65, 123, 283
FaqI GGGAC 1 cut(s) 284
FatI CATG 4 cut(s) 44, 61, 119, 279
FauI CCCGC 2 cut(s) 115, 359
Fnu4HI GCNGC 2 cut(s) 492, 521
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 492, 521
GluI GCNGC 2 cut(s) 492, 521
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 4 cut(s) 105, 168, 243, 252
HapII CCGG 2 cut(s) 240, 317
HgaI GACGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 48, 65, 123, 283
HinfI GANTC 3 cut(s) 210, 460, 601
HpaII CCGG 2 cut(s) 240, 317
HphI GGTGA 2 cut(s) 305, 428
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 4 cut(s) 209, 273, 600, 606
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 2 cut(s) 517, 540
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 5 cut(s) 83, 123, 134, 221, 520
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 120, 249
HpyF3I CTNAG 2 cut(s) 163, 597
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 4 cut(s) 48, 65, 123, 283
LmnI GCTCC 2 cut(s) 100, 320
Lsp1109I GCAGC 2 cut(s) 478, 532
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 2 cut(s) 139, 416
MboII GAAGA 2 cut(s) 13, 422
MluCI AATT 2 cut(s) 360, 634
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 5 cut(s) 254, 263, 337, 388, 444
MseI TTAA 3 cut(s) 231, 543, 637
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 240, 317
MspR9I CCNGG 2 cut(s) 317, 318
MwoI GCNNNNNNNGC 3 cut(s) 111, 120, 249
NciI CCSGG 2 cut(s) 317, 318
NlaIII CATG 4 cut(s) 48, 65, 123, 283
NlaIV GGNNCC 3 cut(s) 106, 177, 322
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 416
NspI RCATGY 1 cut(s) 65
PceI AGGCCT 1 cut(s) 168
PfeI GAWTC 3 cut(s) 210, 460, 601
PkrI GCNGC 2 cut(s) 493, 522
PspN4I GGNNCC 3 cut(s) 106, 177, 322
PspPI GGNCC 1 cut(s) 104
RsaI GTAC 2 cut(s) 200, 631
RsaNI GTAC 2 cut(s) 199, 630
SaqAI TTAA 3 cut(s) 231, 543, 637
SatI GCNGC 2 cut(s) 492, 521
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 317, 318
SetI ASST 6 cut(s) 97, 141, 200, 393, 525, 594
SfiI GGCCNNNNNGGCC 1 cut(s) 249
SmaI CCCGGG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
Sse9I AATT 2 cut(s) 360, 634
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 3 cut(s) 108, 366, 479
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 315, 316
StyI CCWWGG 3 cut(s) 100, 169, 264
TaaI ACNGT 2 cut(s) 517, 540
TaiI ACGT 1 cut(s) 594
TaqI TCGA 2 cut(s) 356, 380
TasI AATT 2 cut(s) 360, 634
TfiI GAWTC 3 cut(s) 210, 460, 601
Tru1I TTAA 3 cut(s) 231, 543, 637
Tru9I TTAA 3 cut(s) 231, 543, 637
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 2 cut(s) 491, 520
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 3 cut(s) 25, 33, 361
TspMI CCCGGG 1 cut(s) 316
TspRI CASTG 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 410
XceI RCATGY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XmaI CCCGGG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.