Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004187.1

Orthogroup ID

OG0011507

Physical Location & Seq

Genomic Coordinates Forward (+)

6884 .. 7522

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004187.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgatttcccccatcttcctcttcgtgttttttttcattctttcatattcctacgcttcacatgtccaagacttctgtgttgcagactactcagctccccgaggccccgtaggctactcatgcaaagacccttcaaaggttaccgtagatgatttcgtcctctcgggccttggggtgcctgctaacacttcaaacatgtacaagtttggattcacagctgcatttgcttttgacttctctggcctcaatggcctcggagtttccatgggtcgcgcagacatagaagttggcggcgttgtccccatccactctcaccccggagctaccgagctagtggttattggtgaaggaagttcgataattggtgggttcattgcgtcgaacaataaggtttatcaaaagcccctgaacaagggtgacactatggttcttcctcaaggcttgtatcacttctttgtgaatcagggtaaaattccggcggtcatatatgctgctttcagtagtgaaagtccaactgtgcagcttttggacacatcattgtttaaaaatgatttagccactgatatcatagcaaagactactttacttgacgttgctcagattgagaaactcaaaaaactctttggtggtactaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

212

Amino Acids

22.7

Weight (kDa)

5.73

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07400
rosa_chinensis	RchiOBHm_Chr2g0093281 RchiOBHm_Chr4g0400351
rosa_laevigata	RLG00000009199 RLG00000016387
rosa_multiflora	Rmu_co8320973.1_g000001 Rmu_sc0004187.1_g000004 Rmu_sc0018548.1_g000001 Rmu_ssc0000245.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148260 Rroxscaffold_5G00345330
rosa_rugosa	Rorug02G0034300 Rorug06G0094000
rosa_samantha	Rh2AG080500 Rh4AG100800 Rh4DG094500 Rh6CG211600
rosa_wichuraiana	Rw0G019270 Rw2G006650 Rw6G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	1 cut(s)	273
AciI	CCGC	2 cut(s)	291, 479
AcsI	RAATTY	1 cut(s)	471
AfaI	GTAC	2 cut(s)	200, 631
AfiI	CCNNNNNNNGG	2 cut(s)	136, 412
AflIII	ACRYGT	2 cut(s)	61, 195
AgsI	TTSAA	2 cut(s)	135, 192
AluBI	AGCT	5 cut(s)	95, 218, 323, 331, 523
AluI	AGCT	5 cut(s)	95, 218, 323, 331, 523
Ama87I	CYCGRG	2 cut(s)	99, 163
AoxI	GGCC	4 cut(s)	103, 166, 241, 250
ApeKI	GCWGC	3 cut(s)	218, 491, 520
ApoI	RAATTY	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	104, 166
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	305, 356, 428
AvaI	CYCGRG	2 cut(s)	99, 163
BanI	GGYRCC	1 cut(s)	175
BbvI	GCAGC	3 cut(s)	205, 478, 532
BccI	CCATC	2 cut(s)	20, 311
BcnI	CCSGG	1 cut(s)	318
BfaI	CTAG	1 cut(s)	332
BglI	GCCNNNNNGGC	2 cut(s)	111, 249
BisI	GCNGC	4 cut(s)	219, 292, 492, 521
BlsI	GCNGC	4 cut(s)	220, 293, 493, 522
Bme1390I	CCNGG	1 cut(s)	318
BmeT110I	CYCGRG	2 cut(s)	99, 163
BmgT120I	GGNCC	2 cut(s)	104, 166
BmiI	GGNNCC	2 cut(s)	106, 177
BmrFI	CCNGG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	318
BsaJI	CCNNGG	5 cut(s)	100, 169, 253, 264, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 412
Bse3DI	GCAATG	1 cut(s)	372
BseDI	CCNNGG	5 cut(s)	100, 169, 253, 264, 316
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	136, 412
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	105, 611
BseXI	GCAGC	3 cut(s)	205, 478, 532
BsgI	GTGCAG	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	105, 168, 243, 252
BshNI	GGYRCC	1 cut(s)	175
BsiHKCI	CYCGRG	2 cut(s)	99, 163
BsiSI	CCGG	2 cut(s)	318, 476
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	136, 412
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	105, 168, 243, 252
BsoBI	CYCGRG	2 cut(s)	99, 163
Bsp1407I	TGTACA	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	291, 479
BspANI	GGCC	4 cut(s)	105, 168, 243, 252
BspCNI	CTCAG	2 cut(s)	104, 610
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	106, 177
BspT107I	GGYRCC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	372
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	5 cut(s)	100, 169, 253, 264, 316
BssT1I	CCWWGG	2 cut(s)	169, 264
Bst4CI	ACNGT	2 cut(s)	145, 517
Bst6I	CTCTTC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	91, 597
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 120, 224, 249
BstNSI	RCATGY	2 cut(s)	65, 199
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	205, 478, 532
BsuRI	GGCC	4 cut(s)	105, 168, 243, 252
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	104, 166
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	199, 630
CviAII	CATG	4 cut(s)	62, 120, 196, 265
CviQI	GTAC	2 cut(s)	199, 630
DdeI	CTNAG	2 cut(s)	91, 597
DraI	TTTAAA	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	169, 264
Eco32I	GATATC	1 cut(s)	565
Eco88I	CYCGRG	2 cut(s)	99, 163
Eco91I	GGTNACC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	169, 264
ErhI	CCWWGG	2 cut(s)	169, 264
FaeI	CATG	4 cut(s)	65, 123, 199, 268
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	4 cut(s)	61, 119, 195, 264
Fnu4HI	GCNGC	4 cut(s)	219, 292, 492, 521
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	4 cut(s)	219, 292, 492, 521
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	219, 292, 492, 521
HaeIII	GGCC	4 cut(s)	105, 168, 243, 252
HapII	CCGG	2 cut(s)	318, 476
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	65, 123, 199, 268
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	2 cut(s)	210, 460
HpaII	CCGG	2 cut(s)	318, 476
HphI	GGTGA	3 cut(s)	305, 356, 428
Hpy188I	TCNGA	2 cut(s)	257, 600
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	141, 341
HpyCH4III	ACNGT	2 cut(s)	145, 517
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	4 cut(s)	83, 123, 221, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 120, 224, 249
HpyF3I	CTNAG	2 cut(s)	91, 597
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	4 cut(s)	65, 123, 199, 268
HspAI	GCGC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	100, 320
LpnPI	CCDG	6 cut(s)	192, 225, 331, 419, 449, 489
Lsp1109I	GCAGC	3 cut(s)	205, 478, 532
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	2 cut(s)	139, 416
MboII	GAAGA	3 cut(s)	7, 13, 422
MluCI	AATT	2 cut(s)	360, 471
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	6 cut(s)	29, 95, 170, 254, 263, 444
MseI	TTAA	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	2 cut(s)	318, 476
MspR9I	CCNGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	4 cut(s)	111, 120, 224, 249
NciI	CCSGG	1 cut(s)	318
NcoI	CCATGG	1 cut(s)	264
NlaIII	CATG	4 cut(s)	65, 123, 199, 268
NlaIV	GGNNCC	2 cut(s)	106, 177
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	2 cut(s)	65, 199
PciI	ACATGT	2 cut(s)	61, 195
PfeI	GAWTC	2 cut(s)	210, 460
PkrI	GCNGC	4 cut(s)	220, 293, 493, 522
PscI	ACATGT	2 cut(s)	61, 195
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	106, 177
PspPI	GGNCC	2 cut(s)	104, 166
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	200, 631
RsaNI	GTAC	2 cut(s)	199, 630
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	4 cut(s)	219, 292, 492, 521
Sau96I	GGNCC	2 cut(s)	104, 166
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	8 cut(s)	97, 141, 220, 325, 333, 393, 525, 594
SfiI	GGCCNNNNNGGCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	2 cut(s)	360, 471
SsiI	CCGC	2 cut(s)	291, 479
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	2 cut(s)	169, 264
TaaI	ACNGT	2 cut(s)	145, 517
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	2 cut(s)	356, 380
TasI	AATT	2 cut(s)	360, 471
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	210, 460
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	218, 491, 520
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	25, 33, 361
TspRI	CASTG	1 cut(s)	565
XagI	CCTNNNNNAGG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	471
XceI	RCATGY	2 cut(s)	65, 199
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.