Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011507

Physical Location & Seq

Genomic Coordinates Reverse (-)

48704754 .. 48706438

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGGAAGGGAATGGTTGGAGACGGTTTTCCACTGCGTTGCGGGGATGGAATGAGGTTGACGGCGTTCCGGCGAGGAGAGAAGGAAAGTCTACGCCCTTTCTTCCTCTTCGTGTTTTCTTTCATTCTTTCATGTTCCTATGCTTCACATGTCCAAGACTTCTGTGTTGCAGACTACGCAGCTCCCCAAAGCCCTGCAGGCTACTCATGCAAAGACCCTACAAAGGTTACTGTTGATGATTTCGTCCACTCGGGCCTTGGGGTGCCTGCTAACACTTCAAATATGTACAAGTTTGGATTCACTTCTGCATTTGCTTTTAACTTCTCCGGCCTCAATGGCCTCGGCGTTTCTTTGGGCAGGGCAGACGTGGAAGTTGGTGGTGTTGTCCCTATCCACTCTCACCCGGGAGCTACCGAATTGGTAGTTATTGAGGAAGGAAGTTCGATAATTGGCGGGTTCATTGCCTCAAACAACAAGGTTTATCAAAAGCCCTTGAACAAGGGTGACACTATGGTTCTTCCTCAAGGCTTGTATCACTTCTTTGTGAATCAGGGTAAAACTCCAGCGGTCATATATGCTGCTTTCAGTAGTGAAAGCCCAACTGTGCAGCTTTTGGACACATCACTGTTTAAAAATGATTTGGCTACTGATATCATAGCAAAAACTACTTTACTTGACGCTGCTCAGATTCAGAAACTCAAAAAACTCTTTGGTGGTACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

242

Amino Acids

25.8

Weight (kDa)

6.95

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	85 - 230	2.6e-29	Cupin
Cupin_2	PF07883	121 - 193	2.4e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07400
rosa_chinensis	RchiOBHm_Chr2g0093281 RchiOBHm_Chr4g0400351
rosa_laevigata	RLG00000009199 RLG00000016387
rosa_multiflora	Rmu_co8320973.1_g000001 Rmu_sc0004187.1_g000004 Rmu_sc0018548.1_g000001 Rmu_ssc0000245.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148260 Rroxscaffold_5G00345330
rosa_rugosa	Rorug02G0034300 Rorug06G0094000
rosa_samantha	Rh2AG080500 Rh4AG100800 Rh4DG094500 Rh6CG211600
rosa_wichuraiana	Rw0G019270 Rw2G006650 Rw6G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	91
AciI	CCGC	3 cut(s)	42, 453, 566
AfaI	GTAC	2 cut(s)	287, 718
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	279, 496
AjiI	CACGTC	1 cut(s)	367
AluBI	AGCT	3 cut(s)	182, 410, 610
AluI	AGCT	3 cut(s)	182, 410, 610
Alw26I	GTCTC	1 cut(s)	15
Ama87I	CYCGRG	2 cut(s)	250, 403
AoxI	GGCC	3 cut(s)	253, 328, 337
ApeKI	GCWGC	4 cut(s)	179, 578, 607, 680
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	2 cut(s)	404, 405
AsuHPI	GGTGA	2 cut(s)	392, 515
AvaI	CYCGRG	2 cut(s)	250, 403
BanI	GGYRCC	1 cut(s)	262
BbvI	GCAGC	4 cut(s)	191, 565, 619, 667
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	78
BcnI	CCSGG	2 cut(s)	404, 405
BcoDI	GTCTC	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	195
BglI	GCCNNNNNGGC	2 cut(s)	198, 336
BisI	GCNGC	4 cut(s)	180, 579, 608, 681
BlsI	GCNGC	4 cut(s)	181, 580, 609, 682
Bme1390I	CCNGG	2 cut(s)	404, 405
BmeT110I	CYCGRG	2 cut(s)	250, 403
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	404, 405
BpmI	CTGGAG	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	507
BpuMI	CCSGG	2 cut(s)	404, 405
BsaJI	CCNNGG	3 cut(s)	256, 340, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	256, 340, 403
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	698
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	4 cut(s)	191, 565, 619, 667
BsgI	GTGCAG	1 cut(s)	626
BshFI	GGCC	3 cut(s)	255, 330, 339
BshNI	GGYRCC	1 cut(s)	262
BsiHKCI	CYCGRG	2 cut(s)	250, 403
BsiSI	CCGG	3 cut(s)	70, 327, 404
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	3 cut(s)	255, 330, 339
BsoBI	CYCGRG	2 cut(s)	250, 403
Bsp1407I	TGTACA	1 cut(s)	285
BspACI	CCGC	3 cut(s)	42, 453, 566
BspANI	GGCC	3 cut(s)	255, 330, 339
BspCNI	CTCAG	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	256, 340, 403
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	4 cut(s)	26, 232, 604, 627
Bst6I	CTCTTC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	199, 267
BstDEI	CTNAG	1 cut(s)	684
BstF5I	GGATG	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 198, 207, 336
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	402, 403
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	4 cut(s)	191, 565, 619, 667
BsuRI	GGCC	3 cut(s)	255, 330, 339
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 623
Cac8I	GCNNGC	2 cut(s)	199, 267
Cfr13I	GGNCC	1 cut(s)	253
Cfr9I	CCCGGG	1 cut(s)	403
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	2 cut(s)	286, 717
CviAII	CATG	3 cut(s)	132, 149, 207
CviQI	GTAC	2 cut(s)	286, 717
DdeI	CTNAG	1 cut(s)	684
DraI	TTTAAA	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	652
Eco88I	CYCGRG	2 cut(s)	250, 403
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	3 cut(s)	135, 152, 210
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	3 cut(s)	131, 148, 206
FauI	CCCGC	2 cut(s)	35, 446
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	180, 579, 608, 681
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	4 cut(s)	180, 579, 608, 681
GluI	GCNGC	4 cut(s)	180, 579, 608, 681
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	255, 330, 339
HapII	CCGG	3 cut(s)	70, 327, 404
HgaI	GACGC	1 cut(s)	686
Hin1II	CATG	3 cut(s)	135, 152, 210
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	3 cut(s)	297, 547, 688
HpaII	CCGG	3 cut(s)	70, 327, 404
HphI	GGTGA	2 cut(s)	392, 515
Hpy166II	GTNNAC	3 cut(s)	60, 92, 247
Hpy188I	TCNGA	2 cut(s)	687, 693
Hpy8I	GTNNAC	3 cut(s)	60, 92, 247
HpyAV	CCTTC	2 cut(s)	76, 428
HpyCH4III	ACNGT	4 cut(s)	26, 232, 604, 627
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	5 cut(s)	170, 197, 210, 308, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 198, 207, 336
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	135, 152, 210
LmnI	GCTCC	2 cut(s)	187, 407
LpnPI	CCDG	9 cut(s)	83, 183, 207, 279, 340, 343, 417, 536, 576
Lsp1109I	GCAGC	4 cut(s)	191, 565, 619, 667
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	226, 503
MboII	GAAGA	3 cut(s)	94, 100, 509
MluCI	AATT	3 cut(s)	416, 447, 721
MnlI	CCTC	8 cut(s)	48, 68, 116, 341, 350, 424, 475, 531
MseI	TTAA	3 cut(s)	318, 630, 724
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	3 cut(s)	70, 327, 404
MspR9I	CCNGG	2 cut(s)	404, 405
MwoI	GCNNNNNNNGC	4 cut(s)	176, 198, 207, 336
NciI	CCSGG	2 cut(s)	404, 405
NlaIII	CATG	3 cut(s)	135, 152, 210
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	152
PciI	ACATGT	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	297, 547, 688
PkrI	GCNGC	4 cut(s)	181, 580, 609, 682
PscI	ACATGT	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	287, 718
RsaNI	GTAC	2 cut(s)	286, 717
SaqAI	TTAA	3 cut(s)	318, 630, 724
SatI	GCNGC	4 cut(s)	180, 579, 608, 681
Sau96I	GGNCC	1 cut(s)	253
SbfI	CCTGCAGG	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	404, 405
SdaI	CCTGCAGG	1 cut(s)	199
SetI	ASST	7 cut(s)	59, 184, 228, 369, 412, 480, 612
SfcI	CTRYAG	1 cut(s)	195
SfiI	GGCCNNNNNGGCC	1 cut(s)	336
SmaI	CCCGGG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
Sse8387I	CCTGCAGG	1 cut(s)	199
Sse9I	AATT	3 cut(s)	416, 447, 721
SsiI	CCGC	3 cut(s)	42, 453, 566
StyD4I	CCNGG	2 cut(s)	402, 403
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	4 cut(s)	26, 232, 604, 627
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	443
TasI	AATT	3 cut(s)	416, 447, 721
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	3 cut(s)	297, 547, 688
Tru1I	TTAA	3 cut(s)	318, 630, 724
Tru9I	TTAA	3 cut(s)	318, 630, 724
TscAI	CASTG	2 cut(s)	39, 630
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	4 cut(s)	179, 578, 607, 680
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	3 cut(s)	112, 120, 448
TspMI	CCCGGG	1 cut(s)	403
TspRI	CASTG	2 cut(s)	39, 630
XceI	RCATGY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmaI	CCCGGG	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.