Rorug02G0034300

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011507
Physical Location & Seq
Reverse (-)
2715328 .. 2716031
704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0034300.1

Sequence Viewer

Length: 354 bp
ATGGATTCGGATCTGAGCAAGCTTTGTATCGGCAGGAATTCATGGGAGATGTCGGAGGACAATCTGAAGGAGTACTTCGGCAACTACCGCAACGTTTTGCAGACGGTGGTTATGAGAGACAGGATCACTCAAAGGCCCAGAGGTATGGCTTATCGGATCGGCTACAGAAAGCACAAGTACTGCTTAGATAATTTGAAGGATTTGCTGAGGTTCTTGAGGCGCAATGATCCGCAGAACCGGGATGTTTTCAAGGAAGTATGCAAGTGGAATATTGTATCTAAGGATTTGATACCTATTATTGAGCACTGCCAAGATGATCGTAGCTTGGTTTTAAATGCAGGCAAGTTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

117

Amino Acids

14.04

Weight (kDa)

9.3

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIMELESS PF04821 55 - 113 1.4e-14 Timeless protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 88, 230
AclI AACGTT 1 cut(s) 93
AclWI GGATC 4 cut(s) 18, 131, 164, 221
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 2 cut(s) 74, 179
AgsI TTSAA 2 cut(s) 196, 250
AluBI AGCT 2 cut(s) 22, 324
AluI AGCT 2 cut(s) 22, 324
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 4 cut(s) 18, 131, 164, 221
AoxI GGCC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 37
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 163
BmcAI AGTACT 2 cut(s) 74, 179
Bme1390I CCNGG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 9
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 1 cut(s) 9
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 5, 197
BshFI GGCC 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 5 cut(s) 10, 123, 156, 226, 316
BspACI CCGC 2 cut(s) 88, 230
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 2 cut(s) 6, 198
BspPI GGATC 4 cut(s) 18, 131, 164, 221
BsrDI GCAATG 1 cut(s) 229
BssMI GATC 5 cut(s) 10, 123, 156, 226, 316
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 20, 340
BstDEI CTNAG 4 cut(s) 14, 184, 206, 279
BstF5I GGATG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 5 cut(s) 13, 126, 159, 229, 319
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 5 cut(s) 10, 123, 156, 226, 316
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 2 cut(s) 20, 340
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 2 cut(s) 73, 178
CviAII CATG 1 cut(s) 42
CviJI RGCY 5 cut(s) 22, 136, 149, 162, 324
CviKI_1 RGCY 5 cut(s) 22, 136, 149, 162, 324
CviQI GTAC 2 cut(s) 73, 178
DdeI CTNAG 4 cut(s) 14, 184, 206, 279
DpnI GATC 5 cut(s) 12, 125, 158, 228, 318
DpnII GATC 5 cut(s) 10, 123, 156, 226, 316
DraI TTTAAA 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 37
FaeI CATG 1 cut(s) 45
FaiI YATR 4 cut(s) 43, 113, 146, 259
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 167, 199
FatI CATG 1 cut(s) 41
FokI GGATG 1 cut(s) 254
GlaI GCGC 1 cut(s) 221
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 238
HhaI GCGC 1 cut(s) 222
Hin1II CATG 1 cut(s) 45
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 238
Hpy188I TCNGA 5 cut(s) 10, 15, 55, 66, 156
Hpy188III TCNNGA 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 61, 190
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 100, 261, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 4 cut(s) 14, 184, 206, 279
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 45
HspAI GCGC 1 cut(s) 220
Kzo9I GATC 5 cut(s) 10, 123, 156, 226, 316
LpnPI CCDG 5 cut(s) 19, 106, 151, 251, 324
MaeII ACGT 1 cut(s) 93
MalI GATC 5 cut(s) 12, 125, 158, 228, 318
MboI GATC 5 cut(s) 10, 123, 156, 226, 316
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 2 cut(s) 37, 190
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 4 cut(s) 49, 134, 201, 210
MseI TTAA 1 cut(s) 332
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 87
NciI CCSGG 1 cut(s) 239
NdeII GATC 5 cut(s) 10, 123, 156, 226, 316
NlaIII CATG 1 cut(s) 45
PfeI GAWTC 1 cut(s) 5
Psp1406I AACGTT 1 cut(s) 93
PspPI GGNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 2 cut(s) 74, 179
RsaNI GTAC 2 cut(s) 73, 178
SaqAI TTAA 1 cut(s) 332
Sau3AI GATC 5 cut(s) 10, 123, 156, 226, 316
Sau96I GGNCC 1 cut(s) 135
ScaI AGTACT 2 cut(s) 74, 179
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 306
SetI ASST 6 cut(s) 24, 96, 145, 212, 295, 326
SfcI CTRYAG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 2 cut(s) 37, 190
SsiI CCGC 2 cut(s) 88, 230
SspI AATATT 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 96
TasI AATT 2 cut(s) 37, 190
TatI WGTACW 2 cut(s) 72, 177
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 311
XapI RAATTY 1 cut(s) 37
ZrmI AGTACT 2 cut(s) 74, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.