Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011507

Physical Location & Seq

Genomic Coordinates Reverse (-)

6117896 .. 6118534

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016387

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATTTCCCCTATCTTCCTCTTCGTATTTTCTTTTATTCTTTCATGTTCCTATGCTTCACATGTCCAAGACTTCTGTGTTGCAGACTACGCAGCTCCCCAAGGCCCCGCAGGCTACTCATGCAAAGACCTTGCAAAGGTTACCGTAGATGATTTCGTCCACTCAGGCCTTGGGGTGCCTGCTGACACTTCAAACATGTACAAGTTTGGATTCACAGCTGCATTTGCTTTTAACTTCTCCGGCCTCAATGGCCTCGGCGTTTCCATGGGTCGCGCAGACGTGGAAGTTGGCGGTGTTGTCCCTATCCACTCTCACCCCGGAGCTACCGAACTAGTGGTTATTGGGGAAGGAAGTTCGATAATTGGCGGGTTCATTGCCTCGAACGACAAGGTTTATCAAAAGCCCCTGAACAAGGGTGACACTATGGTTCTTCCTCAAGGCTTGTATCACTTCTTTGTGAATCAGGGTAAAACTCCAGCGGTCATATATGCTTCTTTCAGTAGTGAAAGCCCAACTGTGCAACTTTTGGACACATCACTATTTAAAAATGATTTGGCTACTGATATCATTGCAAAGACTACTTTACTTGACGCTGCTCAGATTCAGAAACTCAAAAAACTCTTTGGTGGTACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

213

Amino Acids

22.49

Weight (kDa)

5.63

Isoelectric Point (pI)

25.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	56 - 201	1.7e-28	Cupin
Cupin_2	PF07883	92 - 164	7.9e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07400
rosa_chinensis	RchiOBHm_Chr2g0093281 RchiOBHm_Chr4g0400351
rosa_laevigata	RLG00000009199 RLG00000016387
rosa_multiflora	Rmu_co8320973.1_g000001 Rmu_sc0004187.1_g000004 Rmu_sc0018548.1_g000001 Rmu_ssc0000245.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148260 Rroxscaffold_5G00345330
rosa_rugosa	Rorug02G0034300 Rorug06G0094000
rosa_samantha	Rh2AG080500 Rh4AG100800 Rh4DG094500 Rh6CG211600
rosa_wichuraiana	Rw0G019270 Rw2G006650 Rw6G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	1 cut(s)	273
AciI	CCGC	4 cut(s)	108, 291, 366, 479
AfaI	GTAC	2 cut(s)	200, 631
AfiI	CCNNNNNNNGG	2 cut(s)	136, 412
AflIII	ACRYGT	2 cut(s)	61, 195
AgsI	TTSAA	1 cut(s)	192
AhlI	ACTAGT	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	3 cut(s)	95, 218, 323
AluI	AGCT	3 cut(s)	95, 218, 323
AoxI	GGCC	4 cut(s)	103, 166, 241, 250
ApeKI	GCWGC	3 cut(s)	92, 218, 593
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	305, 428
BanI	GGYRCC	1 cut(s)	175
BbvI	GCAGC	3 cut(s)	104, 205, 580
BcnI	CCSGG	1 cut(s)	318
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	1 cut(s)	332
BglI	GCCNNNNNGGC	2 cut(s)	111, 249
BisI	GCNGC	3 cut(s)	93, 219, 594
BlsI	GCNGC	3 cut(s)	94, 220, 595
Bme1390I	CCNGG	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	106, 177
BmrFI	CCNGG	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	318
BsaJI	CCNNGG	5 cut(s)	100, 169, 253, 264, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 412
Bse3DI	GCAATG	2 cut(s)	372, 567
BseDI	CCNNGG	5 cut(s)	100, 169, 253, 264, 316
BseLI	CCNNNNNNNGG	2 cut(s)	136, 412
BseMI	GCAATG	2 cut(s)	372, 567
BseMII	CTCAG	2 cut(s)	177, 611
BseXI	GCAGC	3 cut(s)	104, 205, 580
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	105, 168, 243, 252
BshNI	GGYRCC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	240, 318
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	136, 412
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	105, 168, 243, 252
Bsp1407I	TGTACA	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	4 cut(s)	108, 291, 366, 479
BspANI	GGCC	4 cut(s)	105, 168, 243, 252
BspCNI	CTCAG	2 cut(s)	176, 610
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	106, 177
BspT107I	GGYRCC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	372, 567
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	5 cut(s)	100, 169, 253, 264, 316
BssT1I	CCWWGG	3 cut(s)	100, 169, 264
Bst4CI	ACNGT	2 cut(s)	145, 517
Bst6I	CTCTTC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	112, 180
BstDEI	CTNAG	2 cut(s)	163, 597
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	139
BstENI	CCTNNNNNAGG	2 cut(s)	134, 410
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 111, 120, 224, 249
BstNSI	RCATGY	2 cut(s)	65, 199
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	104, 205, 580
BsuRI	GGCC	4 cut(s)	105, 168, 243, 252
BtgI	CCRYGG	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	112, 180
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	199, 630
CviAII	CATG	5 cut(s)	45, 62, 120, 196, 265
CviQI	GTAC	2 cut(s)	199, 630
DdeI	CTNAG	2 cut(s)	163, 597
DraI	TTTAAA	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	3 cut(s)	100, 169, 264
Eco147I	AGGCCT	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	565
Eco91I	GGTNACC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	2 cut(s)	134, 410
EcoO109I	RGGNCCY	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	3 cut(s)	100, 169, 264
ErhI	CCWWGG	3 cut(s)	100, 169, 264
FaeI	CATG	5 cut(s)	48, 65, 123, 199, 268
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	5 cut(s)	44, 61, 119, 195, 264
FauI	CCCGC	2 cut(s)	115, 359
Fnu4HI	GCNGC	3 cut(s)	93, 219, 594
Fsp4HI	GCNGC	3 cut(s)	93, 219, 594
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	3 cut(s)	93, 219, 594
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	4 cut(s)	105, 168, 243, 252
HapII	CCGG	2 cut(s)	240, 318
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	5 cut(s)	48, 65, 123, 199, 268
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	3 cut(s)	210, 460, 601
HpaII	CCGG	2 cut(s)	240, 318
HphI	GGTGA	2 cut(s)	305, 428
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	600, 606
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	145, 517
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	83, 123, 134, 221, 520, 572
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 111, 120, 224, 249
HpyF3I	CTNAG	2 cut(s)	163, 597
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	5 cut(s)	48, 65, 123, 199, 268
HspAI	GCGC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	100, 320
LpnPI	CCDG	8 cut(s)	96, 150, 192, 253, 331, 419, 449, 489
Lsp1109I	GCAGC	3 cut(s)	104, 205, 580
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	139, 416
MboII	GAAGA	3 cut(s)	7, 13, 422
MluCI	AATT	2 cut(s)	360, 634
MnlI	CCTC	5 cut(s)	29, 254, 263, 388, 444
MseI	TTAA	3 cut(s)	231, 543, 637
MspA1I	CMGCKG	2 cut(s)	218, 479
MspI	CCGG	2 cut(s)	240, 318
MspR9I	CCNGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	5 cut(s)	89, 111, 120, 224, 249
NciI	CCSGG	1 cut(s)	318
NcoI	CCATGG	1 cut(s)	264
NlaIII	CATG	5 cut(s)	48, 65, 123, 199, 268
NlaIV	GGNNCC	2 cut(s)	106, 177
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	2 cut(s)	65, 199
PceI	AGGCCT	1 cut(s)	168
PciI	ACATGT	2 cut(s)	61, 195
PfeI	GAWTC	3 cut(s)	210, 460, 601
PkrI	GCNGC	3 cut(s)	94, 220, 595
PscI	ACATGT	2 cut(s)	61, 195
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	106, 177
PspPI	GGNCC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	200, 631
RsaNI	GTAC	2 cut(s)	199, 630
SaqAI	TTAA	3 cut(s)	231, 543, 637
SatI	GCNGC	3 cut(s)	93, 219, 594
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	7 cut(s)	97, 132, 141, 220, 282, 325, 393
SfiI	GGCCNNNNNGGCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SpeI	ACTAGT	1 cut(s)	331
Sse9I	AATT	2 cut(s)	360, 634
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	4 cut(s)	108, 291, 366, 479
SspMI	CTAG	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	3 cut(s)	100, 169, 264
TaaI	ACNGT	2 cut(s)	145, 517
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	356, 380
TasI	AATT	2 cut(s)	360, 634
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	3 cut(s)	210, 460, 601
Tru1I	TTAA	3 cut(s)	231, 543, 637
Tru9I	TTAA	3 cut(s)	231, 543, 637
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	92, 218, 593
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	33, 361
XagI	CCTNNNNNAGG	2 cut(s)	134, 410
XceI	RCATGY	2 cut(s)	65, 199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.