Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007422

Physical Location & Seq

Genomic Coordinates Reverse (-)

4704172 .. 4708048

Gene Structure 3877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCAGCTCAGTCTGGTTGTTCTGCTCCGGTGGTTCCTTCTCTTCCGCCGCCAGCTCCAAAGTCGCCGCCGCAGTACCCAGATTTGTATGGCAAGCGCAGAGAAACCGCCAGGGTTCAGATGCTTGAGAGGGAAATTGGCTTTCTTGAGGAGGAACTAAAATCTGTTGAACGCCTTCAACCCGCATCCAAATGCTGCAAAGAGATTGCTGATTTTGTGACTGCCAATCCAGATCCGTTAATACCTACAAATCGAAAGAAACGACGATCATGTCGCTTTTGGAAATGGCTATGTGGAATGCCCTGTTTTAGCTTGTCATCGATTTGCTGTTGCTGCTGTTGTGATGGGTGCTCTCTAGAAATGCCACGCTGCTCCTGCTGCAGTTGCTCCAGCTGCAGTTCATGCAGCGGTTCAGGTTGCGGTTCATGCAGTGGTCCATGTAACTGTAAATCGTGTTTCAGTTGCAAATCATGTTTCAGTTGCAAATCGTGTTTCAGTTGCAAATCGTGTTTCAGTTGCAAATCATGTTTCAGTTGCAAATCGTGTTTCAGTTGCCCTTCACTACCAAAGTGGCAGTGTTGCTGCTCATGTCCCCGATCTCGTTGCTGCTCATGTCCCCGATCCCGTTGCTGCAAAACTAATTCATGTTCGTGCAGCAAAAATTGCTGCACTTTACCATCATGTTCGTGTTCATGTCCCGATTGCTCTTGTTTGAATTGTTTCAAATGGAAATGCTCTTGTCCTAAATGTCCGAAGGTACGGCCTTGTTGCTGTTGTAAAATAACCTGCTGTAACCCTTGCAGTATATGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

272

Amino Acids

29.44

Weight (kDa)

8.68

Isoelectric Point (pI)

82.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20635 AT5G20635
fragaria_vesca	FvH4_1g08850 FvH4_1g08850
malus_domestica	MD02G1093600.v1.1 MD15G1218900.v1.1
prunus_persica	Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1
pyrus_communis	pycom02g07380 pycom15g19410
rosa_chinensis	RchiOBHm_Chr2g0095321 RchiOBHm_Chr6g0246401 RchiOBHm_Chr6g0246621 RchiOBHm_Chr6g0246681
rosa_laevigata	RLG00000016554
rosa_roxburghii	Rroxscaffold_2G00146480
rosa_rugosa	Rorug02G0049300
rosa_samantha	Rh2AG097700 Rh2BG098900 Rh2CG101000 Rh2DG098600
rosa_wichuraiana	Rw2G007370 Rw6G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	794
AciI	CCGC	8 cut(s)	47, 50, 68, 71, 108, 183, 408, 420
AclWI	GGATC	2 cut(s)	227, 615
AfaI	GTAC	2 cut(s)	77, 759
AgsI	TTSAA	4 cut(s)	170, 179, 715, 724
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	4 cut(s)	8, 56, 312, 393
AluI	AGCT	4 cut(s)	8, 56, 312, 393
Alw21I	GWGCWC	1 cut(s)	353
AlwI	GGATC	2 cut(s)	227, 615
AoxI	GGCC	1 cut(s)	761
Asp700I	GAANNNNTTC	2 cut(s)	174, 719
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	353
BccI	CCATC	2 cut(s)	338, 685
BceAI	ACGGC	1 cut(s)	776
BcgI	CGANNNNNNTGC	4 cut(s)	585, 609, 619, 643
BciT130I	CCWGG	1 cut(s)	112
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	2 cut(s)	379, 394
BfuAI	ACCTGC	1 cut(s)	794
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	111, 194
BpmI	CTGGAG	1 cut(s)	373
BpuEI	CTTGAG	2 cut(s)	146, 167
Bsa29I	ATCGAT	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	164
BsgI	GTGCAG	2 cut(s)	652, 673
BshFI	GGCC	1 cut(s)	763
BshVI	ATCGAT	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	3 cut(s)	576, 600, 681
BsmFI	GGGAC	3 cut(s)	576, 600, 681
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	763
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	4 cut(s)	232, 266, 596, 620
BspACI	CCGC	8 cut(s)	47, 50, 68, 71, 108, 183, 408, 420
BspANI	GGCC	1 cut(s)	763
BspCNI	CTCAG	1 cut(s)	22
BspDI	ATCGAT	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	2 cut(s)	383, 398
BspMI	ACCTGC	1 cut(s)	794
BspPI	GGATC	2 cut(s)	227, 615
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	4 cut(s)	232, 266, 596, 620
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	2 cut(s)	402, 663
BstC8I	GCNNGC	2 cut(s)	54, 95
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	4 cut(s)	235, 269, 599, 623
BstMBI	GATC	4 cut(s)	232, 266, 596, 620
BstMWI	GCNNNNNNNGC	8 cut(s)	333, 375, 378, 384, 393, 402, 426, 663
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	379, 394
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	763
BsuTUI	ATCGAT	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	185
BtsI	GCAGTG	2 cut(s)	436, 581
BtsIMutI	CAGTG	2 cut(s)	436, 581
BveI	ACCTGC	1 cut(s)	794
Cac8I	GCNNGC	2 cut(s)	54, 95
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	76, 758
CviJI	RGCY	7 cut(s)	8, 56, 141, 289, 312, 393, 763
CviKI_1	RGCY	7 cut(s)	8, 56, 141, 289, 312, 393, 763
CviQI	GTAC	2 cut(s)	76, 758
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	4 cut(s)	234, 268, 598, 622
DpnII	GATC	4 cut(s)	232, 266, 596, 620
DrdI	GACNNNNNNGTC	1 cut(s)	270
DseDI	GACNNNNNNGTC	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	110
FaqI	GGGAC	3 cut(s)	576, 600, 681
FauI	CCCGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	172
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	373
HaeIII	GGCC	1 cut(s)	763
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	99
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	120, 753
Hpy188III	TCNNGA	4 cut(s)	146, 230, 356, 698
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	4 cut(s)	48, 185, 567, 748
HpyCH4III	ACNGT	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	8 cut(s)	333, 375, 378, 384, 393, 402, 426, 663
HpyF3I	CTNAG	1 cut(s)	9
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	232, 266, 596, 620
LmnI	GCTCC	4 cut(s)	31, 61, 377, 392
LweI	GCATC	2 cut(s)	111, 194
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	3 cut(s)	217, 440, 791
MalI	GATC	4 cut(s)	234, 268, 598, 622
MboI	GATC	4 cut(s)	232, 266, 596, 620
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	4 cut(s)	135, 640, 661, 715
MnlI	CCTC	3 cut(s)	123, 142, 145
MroXI	GAANNNNTTC	2 cut(s)	174, 719
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	3 cut(s)	190, 649, 685
MspA1I	CMGCKG	2 cut(s)	393, 408
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	112
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	8 cut(s)	333, 375, 378, 384, 393, 402, 426, 663
NdeII	GATC	4 cut(s)	232, 266, 596, 620
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	1 cut(s)	303
PdmI	GAANNNNTTC	2 cut(s)	174, 719
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	434
PstI	CTGCAG	2 cut(s)	383, 398
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	393
RsaI	GTAC	2 cut(s)	77, 759
RsaNI	GTAC	2 cut(s)	76, 758
RseI	CAYNNNNRTG	3 cut(s)	190, 649, 685
SaqAI	TTAA	1 cut(s)	239
Sau3AI	GATC	4 cut(s)	232, 266, 596, 620
Sau96I	GGNCC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	8 cut(s)	10, 58, 247, 314, 395, 418, 759, 788
SfaNI	GCATC	2 cut(s)	111, 194
SfcI	CTRYAG	2 cut(s)	379, 394
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	3 cut(s)	190, 649, 685
SmlI	CTYRAG	2 cut(s)	125, 146
SmoI	CTYRAG	2 cut(s)	125, 146
Sse9I	AATT	4 cut(s)	135, 640, 661, 715
SsiI	CCGC	8 cut(s)	47, 50, 68, 71, 108, 183, 408, 420
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	2 cut(s)	253, 320
TasI	AATT	4 cut(s)	135, 640, 661, 715
TauI	GCSGC	3 cut(s)	52, 70, 73
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	436, 581
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	390, 414, 633, 681
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	436, 581
VpaK11BI	GGWCC	1 cut(s)	434
XbaI	TCTAGA	1 cut(s)	355
XmnI	GAANNNNTTC	2 cut(s)	174, 719
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.