Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007422

Physical Location & Seq

Genomic Coordinates Reverse (-)

7443962 .. 7446824

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1093600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCAGCTCCTTCTGGTAGCTCTGCTTCTGTGCCGTCTCTGCCACCGCCACGCCCAAAGTCGCCGCCGCAGTATCCTGATTTGTATGGGAAGCGCAGAGAAACAGCCCGGGTTCAGATGCTCGAGAGGGAAATTGGTTTTCTTGAGGAGGAACTAAAATCTGTTGAACGGCTTCAACCTGCTTCCAGATGCTGCAAAGAGGTTGTTGATTTTGTGGTTGCAAACCCAGATCCGTTAATACCTACGAATAGAAAGAAACGCAGGTCATGCCGCTTCTGGAAATGGCTATGCGGAATGCCCTGTTTCAGCTGCTCATGGATTTGCTGTTGCTGCTGCGACGGGTGCTCTCTCCACCTAGAAATGCCACGCTGCTGTGACTGCGGTCTGTGTAACTGTAATCCATGTGCCTGCTGTCCGCTACCAAAGTGGCGATGTTGCTGCTCATGTCCCCGCTCCAAGTGCTGCAAAAATATTTCATGCAGCAGAAATTGTTGCATTTTTCCATCCTGTTCATGTCCCGATTGCTCTTGCGCAAACTGTTGCATTTTCCCGTCCTGTTCATGTCCCGATTGCTCCTGCGCAAATTGTTGCAAATGGAAATGCTCTTGCCCTAAATGTCCGAAGGTACGACCGTGTTGCTGTTGTAGAATAACCTGTTGCAACCCTTGTAGTATATGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

228

Amino Acids

25.21

Weight (kDa)

8.54

Isoelectric Point (pI)

71.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20635 AT5G20635
fragaria_vesca	FvH4_1g08850 FvH4_1g08850
malus_domestica	MD02G1093600.v1.1 MD15G1218900.v1.1
prunus_persica	Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1
pyrus_communis	pycom02g07380 pycom15g19410
rosa_chinensis	RchiOBHm_Chr2g0095321 RchiOBHm_Chr6g0246401 RchiOBHm_Chr6g0246621 RchiOBHm_Chr6g0246681
rosa_laevigata	RLG00000016554
rosa_roxburghii	Rroxscaffold_2G00146480
rosa_rugosa	Rorug02G0049300
rosa_samantha	Rh2AG097700 Rh2BG098900 Rh2CG101000 Rh2DG098600
rosa_wichuraiana	Rw2G007370 Rw6G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	532, 580
Acc36I	ACCTGC	2 cut(s)	187, 252
AccBSI	CCGCTC	1 cut(s)	453
AciI	CCGC	8 cut(s)	47, 65, 68, 271, 291, 381, 416, 451
AclWI	GGATC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	627
AgsI	TTSAA	2 cut(s)	167, 176
AluBI	AGCT	3 cut(s)	8, 21, 309
AluI	AGCT	3 cut(s)	8, 21, 309
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	192
Ama87I	CYCGRG	2 cut(s)	108, 122
ApeKI	GCWGC	9 cut(s)	5, 192, 309, 330, 333, 369, 438, 462, 480
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	3 cut(s)	96, 533, 581
AsuC2I	CCSGG	2 cut(s)	109, 110
AvaI	CYCGRG	2 cut(s)	108, 122
BaeI	ACNNNNGTAYC	2 cut(s)	617, 650
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	9 cut(s)	17, 179, 296, 317, 320, 356, 425, 449, 492
BccI	CCATC	1 cut(s)	511
BceAI	ACGGC	2 cut(s)	19, 185
BcgI	CGANNNNNNTGC	4 cut(s)	420, 454, 618, 652
BciVI	GTATCC	1 cut(s)	84
BcnI	CCSGG	2 cut(s)	109, 110
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	356
BfuAI	ACCTGC	2 cut(s)	187, 252
BfuI	GTATCC	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	109, 110
BmeT110I	CYCGRG	2 cut(s)	108, 122
BmrFI	CCNGG	2 cut(s)	109, 110
BmsI	GCATC	2 cut(s)	108, 179
BoxI	GACNNNNGTC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	2 cut(s)	109, 110
BsaJI	CCNNGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	503
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	9 cut(s)	17, 179, 296, 317, 320, 356, 425, 449, 492
Bsh1285I	CGRYCG	1 cut(s)	632
BsiEI	CGRYCG	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	347
BsiHKCI	CYCGRG	2 cut(s)	108, 122
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	3 cut(s)	432, 501, 549
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	3 cut(s)	432, 501, 549
BsmI	GAATGC	1 cut(s)	300
BsoBI	CYCGRG	2 cut(s)	108, 122
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	8 cut(s)	47, 65, 68, 271, 291, 381, 416, 451
BspMI	ACCTGC	2 cut(s)	187, 252
BspPI	GGATC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	3 cut(s)	395, 539, 633
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	503
BstHHI	GCGC	3 cut(s)	96, 533, 581
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	229
BstMCI	CGRYCG	1 cut(s)	632
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 267, 330, 342, 378, 459
BstPAI	GACNNNNGTC	1 cut(s)	381
BstSCI	CCNGG	2 cut(s)	107, 108
BstV1I	GCAGC	9 cut(s)	17, 179, 296, 317, 320, 356, 425, 449, 492
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	503
BveI	ACCTGC	2 cut(s)	187, 252
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	192
CfoI	GCGC	3 cut(s)	96, 533, 581
Cfr9I	CCCGGG	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	626
CviAII	CATG	7 cut(s)	267, 315, 402, 444, 477, 513, 561
CviJI	RGCY	6 cut(s)	8, 21, 107, 172, 286, 309
CviKI_1	RGCY	6 cut(s)	8, 21, 107, 172, 286, 309
CviQI	GTAC	1 cut(s)	626
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco88I	CYCGRG	2 cut(s)	108, 122
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	7 cut(s)	270, 318, 405, 447, 480, 516, 564
FaqI	GGGAC	3 cut(s)	432, 501, 549
FatI	CATG	7 cut(s)	266, 314, 401, 443, 476, 512, 560
FauI	CCCGC	1 cut(s)	458
FokI	GGATG	1 cut(s)	490
FspBI	CTAG	1 cut(s)	356
FspI	TGCGCA	2 cut(s)	532, 580
GlaI	GCGC	3 cut(s)	95, 532, 580
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	3 cut(s)	96, 533, 581
Hin1II	CATG	7 cut(s)	270, 318, 405, 447, 480, 516, 564
Hin6I	GCGC	3 cut(s)	94, 531, 579
HinP1I	GCGC	3 cut(s)	94, 531, 579
HpaII	CCGG	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	117, 621
Hpy188III	TCNNGA	7 cut(s)	77, 124, 143, 186, 277, 518, 566
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	21, 616
HpyCH4III	ACNGT	3 cut(s)	395, 539, 633
HpyCH4V	TGCA	8 cut(s)	195, 221, 465, 480, 495, 543, 591, 660
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 267, 330, 342, 378, 459
Hsp92II	CATG	7 cut(s)	270, 318, 405, 447, 480, 516, 564
HspAI	GCGC	3 cut(s)	94, 531, 579
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	3 cut(s)	13, 458, 578
Lsp1109I	GCAGC	9 cut(s)	17, 179, 296, 317, 320, 356, 425, 449, 492
LweI	GCATC	2 cut(s)	108, 179
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	374, 389
MalI	GATC	1 cut(s)	231
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	1 cut(s)	229
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	3 cut(s)	132, 487, 583
MnlI	CCTC	4 cut(s)	120, 139, 142, 193
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	109, 110
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	6 cut(s)	40, 267, 330, 342, 378, 459
NciI	CCSGG	2 cut(s)	109, 110
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	7 cut(s)	270, 318, 405, 447, 480, 516, 564
NmuCI	GTSAC	1 cut(s)	374
NsbI	TGCGCA	2 cut(s)	532, 580
PaeR7I	CTCGAG	1 cut(s)	122
PctI	GAATGC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	171
PshAI	GACNNNNGTC	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
SaqAI	TTAA	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	109, 110
SduI	GDGCHC	1 cut(s)	347
SfaNI	GCATC	2 cut(s)	108, 179
Sfr274I	CTCGAG	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	122, 143
SmoI	CTYRAG	2 cut(s)	122, 143
Sse9I	AATT	3 cut(s)	132, 487, 583
SsiI	CCGC	8 cut(s)	47, 65, 68, 271, 291, 381, 416, 451
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	107, 108
TaaI	ACNGT	3 cut(s)	395, 539, 633
TaqI	TCGA	1 cut(s)	123
TasI	AATT	3 cut(s)	132, 487, 583
TauI	GCSGC	3 cut(s)	67, 70, 273
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	9 cut(s)	5, 192, 309, 330, 333, 369, 438, 462, 480
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	465, 501, 549
TspGWI	ACGGA	1 cut(s)	222
TspMI	CCCGGG	1 cut(s)	108
XhoI	CTCGAG	1 cut(s)	122
XmaI	CCCGGG	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.