Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007422

Physical Location & Seq

Genomic Coordinates Forward (+)

16723011 .. 16725480

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G009870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTGAGCTGTACGTCTGTGTGTGTGTGTGTGATTACTGAATTCACAAAAGGGATAGGAAAGGAATTTCTAAGTTTTGGCATTTCAGGTGTGAAAATGTTTATTGAGCATGAACTAGTGGAAGAATCATTAGTCATTGTCTTAATAAGAAACATGCCTGAGGAACTAAAATCTGTTGAATGCCTCCAACCTGCTTCTCGATGCTGCAAAGAGATTGCTGATTTTGTGACTGCGAATCCAGATCCATTAATACCAACTGGAATGCCCTGTTTTAGTTTGTCATCGATTTGCTGTTGCTGCTGTTGTGATGGGTGCTCTCTTCACCTAGAAATGCCACGCTGCTCCTGCTGCGGTTTATGCAGCAGTAAATGCTGTGGTTTATGCAAGGATTCATGCTGCAGTCCATCTAACTGTAATTCGTGTTTCAAAATTGCTGCATTTTTCCATTGTGATCGTGTTCTTGTCCTGATTGCTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

160

Amino Acids

17.3

Weight (kDa)

5.32

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20635 AT5G20635
fragaria_vesca	FvH4_1g08850 FvH4_1g08850
malus_domestica	MD02G1093600.v1.1 MD15G1218900.v1.1
prunus_persica	Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1
pyrus_communis	pycom02g07380 pycom15g19410
rosa_chinensis	RchiOBHm_Chr2g0095321 RchiOBHm_Chr6g0246401 RchiOBHm_Chr6g0246621 RchiOBHm_Chr6g0246681
rosa_laevigata	RLG00000016554
rosa_roxburghii	Rroxscaffold_2G00146480
rosa_rugosa	Rorug02G0049300
rosa_samantha	Rh2AG097700 Rh2BG098900 Rh2CG101000 Rh2DG098600
rosa_wichuraiana	Rw2G007370 Rw6G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	2 cut(s)	41, 65
AfaI	GTAC	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	179, 427
AhlI	ACTAGT	1 cut(s)	115
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	236
ApeKI	GCWGC	7 cut(s)	204, 297, 339, 348, 360, 396, 434
ApoI	RAATTY	2 cut(s)	41, 65
AseI	ATTAAT	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	7 cut(s)	191, 284, 326, 335, 372, 383, 421
BccI	CCATC	2 cut(s)	302, 412
BcuI	ACTAGT	1 cut(s)	115
BfaI	CTAG	2 cut(s)	116, 326
BfmI	CTRYAG	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	7 cut(s)	205, 298, 340, 349, 361, 397, 435
BlsI	GCNGC	7 cut(s)	206, 299, 341, 350, 362, 398, 436
BmsI	GCATC	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	262
Bse21I	CCTNAGG	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	7 cut(s)	191, 284, 326, 335, 372, 383, 421
BshVI	ATCGAT	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	317
BsmI	GAATGC	2 cut(s)	185, 267
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	241, 451
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	284
BspMAI	CTGCAG	1 cut(s)	401
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	241, 451
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	71, 159
BstKTI	GATC	2 cut(s)	244, 454
BstMBI	GATC	2 cut(s)	241, 451
BstMWI	GCNNNNNNNGC	5 cut(s)	297, 345, 348, 357, 369
BstNSI	RCATGY	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	7 cut(s)	191, 284, 326, 335, 372, 383, 421
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	159
BsuTUI	ATCGAT	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	3 cut(s)	110, 154, 393
CviJI	RGCY	1 cut(s)	9
CviKI_1	RGCY	1 cut(s)	9
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	71, 159
DpnI	GATC	2 cut(s)	243, 453
DpnII	GATC	2 cut(s)	241, 451
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	41
FaeI	CATG	3 cut(s)	113, 157, 396
FaiI	YATR	5 cut(s)	111, 155, 358, 382, 394
FatI	CATG	3 cut(s)	109, 153, 392
Fnu4HI	GCNGC	7 cut(s)	205, 298, 340, 349, 361, 397, 435
Fsp4HI	GCNGC	7 cut(s)	205, 298, 340, 349, 361, 397, 435
FspBI	CTAG	2 cut(s)	116, 326
GluI	GCNGC	7 cut(s)	205, 298, 340, 349, 361, 397, 435
Hin1II	CATG	3 cut(s)	113, 157, 396
HinfI	GANTC	3 cut(s)	125, 235, 389
HphI	GGTGA	1 cut(s)	314
Hpy188III	TCNNGA	3 cut(s)	198, 239, 466
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	207, 360, 384, 399, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	297, 345, 348, 357, 369
HpyF3I	CTNAG	2 cut(s)	71, 159
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	113, 157, 396
Kzo9I	GATC	2 cut(s)	241, 451
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	8 cut(s)	72, 171, 204, 243, 252, 280, 358, 479
Lsp1109I	GCAGC	7 cut(s)	191, 284, 326, 335, 372, 383, 421
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	116, 326
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	243, 453
MboI	GATC	2 cut(s)	241, 451
MboII	GAAGA	2 cut(s)	134, 311
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	4 cut(s)	41, 65, 415, 429
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	154, 194
MseI	TTAA	2 cut(s)	143, 248
Mva1269I	GAATGC	2 cut(s)	185, 267
MwoI	GCNNNNNNNGC	5 cut(s)	297, 345, 348, 357, 369
NdeII	GATC	2 cut(s)	241, 451
NlaIII	CATG	3 cut(s)	113, 157, 396
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	157
PctI	GAATGC	2 cut(s)	185, 267
PfeI	GAWTC	3 cut(s)	125, 235, 389
PkrI	GCNGC	7 cut(s)	206, 299, 341, 350, 362, 398, 436
PshBI	ATTAAT	1 cut(s)	248
PstI	CTGCAG	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	143, 248
SatI	GCNGC	7 cut(s)	205, 298, 340, 349, 361, 397, 435
Sau3AI	GATC	2 cut(s)	241, 451
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	5 cut(s)	11, 17, 91, 193, 327
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	1 cut(s)	397
SpeI	ACTAGT	1 cut(s)	115
Sse9I	AATT	4 cut(s)	41, 65, 415, 429
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	2 cut(s)	116, 326
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	199, 284
TasI	AATT	4 cut(s)	41, 65, 415, 429
TfiI	GAWTC	3 cut(s)	125, 235, 389
Tru1I	TTAA	2 cut(s)	143, 248
Tru9I	TTAA	2 cut(s)	143, 248
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	7 cut(s)	204, 297, 339, 348, 360, 396, 434
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	126, 381
VspI	ATTAAT	1 cut(s)	248
XapI	RAATTY	2 cut(s)	41, 65
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	2 cut(s)	116, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.