Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007422

Physical Location & Seq

Genomic Coordinates Reverse (-)

17698770 .. 17702460

Gene Structure 3691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1218900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCAGCTCCTTCTGGTTGCTCTGCTTCTGTGCCGTCACTGCCACCGCCACACCCAAAGTCGCCGCCGCAGTATCCTGATTTGTATGGGAAGCGCAGAGAAACTGCCAGGGTTCAGATGCTTGAGAGGGAGATTGGTTTTCTTGAGGACGAACTGAAATCTGTTGAACGGCTTCAACCTGCTTCGAGATGCTGCAAAGAGATTACTGATTTTGTGGTTGCAAACCCAGATCCCTTAATACCTACGAATCGAAAGAAACGCCGGTCATGTCGCTTCTGGAAATGGCTATGCGGAATGCCCTGTTTCAGCTGCTCATGGATTTTCTGTTGCTGCTGCGACGGGTGCTCTCTTCACCTAGAAATGCCGCGCTGCTGTGACTGCAGCCCATGTAACTGTAATCCGTTTGCCTGCTGTCGGCTACCAAAGTGGCGATGTTGCTGCACATGTCCCCGGTCCAACTGCTGCAAAAATAATTCATGCAGCAGGAATTGTTGCATTTTTCCGTCGTGTTCATGTCCCGATTGCTCTTGCGGCAACTGTTGCAAATGGAAATGCTCTTGCCCTAAATGTCCGAAGGTACGACCACGTTGCTGTTGTAGAATAACCTGTTGCAACCCTTGTAGTATATGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

212

Amino Acids

23.78

Weight (kDa)

8.68

Isoelectric Point (pI)

66.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20635 AT5G20635
fragaria_vesca	FvH4_1g08850 FvH4_1g08850
malus_domestica	MD02G1093600.v1.1 MD15G1218900.v1.1
prunus_persica	Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1
pyrus_communis	pycom02g07380 pycom15g19410
rosa_chinensis	RchiOBHm_Chr2g0095321 RchiOBHm_Chr6g0246401 RchiOBHm_Chr6g0246621 RchiOBHm_Chr6g0246681
rosa_laevigata	RLG00000016554
rosa_roxburghii	Rroxscaffold_2G00146480
rosa_rugosa	Rorug02G0049300
rosa_samantha	Rh2AG097700 Rh2BG098900 Rh2CG101000 Rh2DG098600
rosa_wichuraiana	Rw2G007370 Rw6G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AccII	CGCG	1 cut(s)	367
AciI	CCGC	6 cut(s)	47, 65, 68, 291, 365, 531
AclWI	GGATC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	1 cut(s)	414
AflIII	ACRYGT	1 cut(s)	443
AgsI	TTSAA	2 cut(s)	167, 176
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	8, 309
AluI	AGCT	2 cut(s)	8, 309
Alw21I	GWGCWC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	2 cut(s)	96, 369
AspS9I	GGNCC	1 cut(s)	453
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	347
BceAI	ACGGC	2 cut(s)	19, 185
BcgI	CGANNNNNNTGC	4 cut(s)	420, 454, 570, 604
BciT130I	CCWGG	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	451
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	187
BfuI	GTATCC	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	109, 451
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	453
BmrFI	CCNGG	2 cut(s)	109, 451
BmsI	GCATC	2 cut(s)	108, 179
BpuEI	CTTGAG	2 cut(s)	143, 164
BpuMI	CCSGG	1 cut(s)	451
BsaJI	CCNNGG	2 cut(s)	108, 449
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse118I	RCCGGY	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	108, 449
BseLI	CCNNNNNNNGG	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	262, 451
BslFI	GGGAC	2 cut(s)	432, 501
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	432, 501
BsmI	GAATGC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	6 cut(s)	47, 65, 68, 291, 365, 531
BspFNI	CGCG	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	383
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	108, 449
BssMI	GATC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	395, 539
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	367
BstHHI	GCGC	2 cut(s)	96, 369
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 342, 378, 531, 540
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	107, 449
BstSFI	CTRYAG	1 cut(s)	379
BstUI	CGCG	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	409
CfoI	GCGC	2 cut(s)	96, 369
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	578
CviAII	CATG	6 cut(s)	267, 315, 387, 444, 477, 513
CviJI	RGCY	6 cut(s)	8, 172, 286, 309, 384, 418
CviKI_1	RGCY	6 cut(s)	8, 172, 286, 309, 384, 418
CviQI	GTAC	1 cut(s)	578
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	6 cut(s)	270, 318, 390, 447, 480, 516
FaqI	GGGAC	2 cut(s)	432, 501
FatI	CATG	6 cut(s)	266, 314, 386, 443, 476, 512
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	2 cut(s)	95, 368
HapII	CCGG	2 cut(s)	262, 451
HhaI	GCGC	2 cut(s)	96, 369
Hin1II	CATG	6 cut(s)	270, 318, 390, 447, 480, 516
Hin6I	GCGC	2 cut(s)	94, 367
HinP1I	GCGC	2 cut(s)	94, 367
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	262, 451
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	2 cut(s)	117, 573
Hpy188III	TCNNGA	5 cut(s)	77, 143, 186, 277, 518
Hpy99I	CGWCG	2 cut(s)	341, 508
HpyAV	CCTTC	2 cut(s)	21, 568
HpyCH4III	ACNGT	2 cut(s)	395, 539
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	9 cut(s)	195, 221, 381, 441, 465, 480, 495, 543, 612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 342, 378, 531, 540
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	6 cut(s)	270, 318, 390, 447, 480, 516
HspAI	GCGC	2 cut(s)	94, 367
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	13
LweI	GCATC	2 cut(s)	108, 179
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	3 cut(s)	36, 374, 389
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	2 cut(s)	472, 487
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	2 cut(s)	120, 139
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	2 cut(s)	262, 451
MspR9I	CCNGG	2 cut(s)	109, 451
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	5 cut(s)	40, 342, 378, 531, 540
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	6 cut(s)	270, 318, 390, 447, 480, 516
NmuCI	GTSAC	2 cut(s)	36, 374
NspI	RCATGY	1 cut(s)	447
PciI	ACATGT	1 cut(s)	443
PctI	GAATGC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	247
PscI	ACATGT	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
SaqAI	TTAA	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	453
ScrFI	CCNGG	2 cut(s)	109, 451
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	8 cut(s)	10, 181, 244, 311, 357, 579, 589, 608
SfaNI	GCATC	2 cut(s)	108, 179
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	122, 143
SmoI	CTYRAG	2 cut(s)	122, 143
Sse9I	AATT	2 cut(s)	472, 487
SsiI	CCGC	6 cut(s)	47, 65, 68, 291, 365, 531
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	107, 449
TaaI	ACNGT	2 cut(s)	395, 539
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	2 cut(s)	185, 250
TasI	AATT	2 cut(s)	472, 487
TauI	GCSGC	4 cut(s)	67, 70, 367, 534
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	36, 374
Tsp45I	GTSAC	2 cut(s)	36, 374
TspDTI	ATGAA	2 cut(s)	465, 501
TspGWI	ACGGA	2 cut(s)	390, 492
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	453
XceI	RCATGY	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.