RchiOBHm_Chr2g0095321

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007422
Physical Location & Seq
Reverse (-)
8276347 .. 8280300
3954 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47030

Sequence Viewer

Length: 813 bp
ATGGCAGCTCAGTCTGGTTGTTCTGCTCCGGTTGTGCCTTCTCTGCCGCCGCCAACTCCAAAGTCGCCGCCCCAGTACCCGGATTTGTATGGCAAGCGCAGAGAAACCGCCAGGGTTCAGATGCTTGAGAGGGAAATTGGGTTTCTTGAGGAGGAACTAAAATCTGTTGAACGCCTTCAACCTGCTTCCCGATGCTGCAAAGAGATTGCTGATTTTGTGACTGCGAATCCAGATCCGTTAATACCTACAAATCGAAAGAAACGACGATCCTGTCGCTTTTGGAAATGGCTCTGTGGAATGCCCTGTTTTAGCTTGTCATCGATTTGCTGTTGCTGCTGTTGTGATGGGTGCACTCTTCACCTAGAAATGCCACGCTGCTCCTGCTGCGGTTCAGGCTGCAGTTCATGCAGCGGTAAATGCTGTGGTTCATGCAGCGGTTCAGGCTGCGGTTTATGCAGCGGTAAATGCTGCAGTTCATGCAGCGGTAAATGCTGCGGTTCATGCAGCGGTAAATGCTGCGGTTCATGCAGTGGTCCATGCTGCGGTCCATGGAACTGTAATTCGTGTTTCAGTTGCCCTTCACTACCAAAGTGGCGATGTTGCTGCTCATGTCCCCGATCCCGTTGCTGCAAAACTAGTTCATGTTCATGCAGCAGAAATTGCTGCATTTTACCATCGTGTTCGTGTTCATGTCCCGATTGCTCTTGTTTGAATTGTTTCAAATGGAAATGCTCTTGTCCTAAATGTCCGAAGGTACGGCCTTGTTGCTGTTGTAAAATAACCTGCTGTAACCCTTGCAGTACATGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-gamma

Protein Analysis

270

Amino Acids

28.85

Weight (kDa)

8.6

Isoelectric Point (pI)

69.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-gamma PF00631 37 - 107 3.2e-12 GGL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 270
Acc36I ACCTGC 2 cut(s) 190, 791
AclWI GGATC 3 cut(s) 227, 261, 612
AfaI GTAC 3 cut(s) 77, 756, 802
AfiI CCNNNNNNNGG 2 cut(s) 79, 542
AflIII ACRYGT 1 cut(s) 803
AgsI TTSAA 4 cut(s) 170, 179, 712, 721
AhlI ACTAGT 1 cut(s) 635
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 2 cut(s) 8, 312
AluI AGCT 2 cut(s) 8, 312
Alw21I GWGCWC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 349
AlwI GGATC 3 cut(s) 227, 261, 612
AoxI GGCC 1 cut(s) 758
ApaLI GTGCAC 1 cut(s) 349
Asp700I GAANNNNTTC 2 cut(s) 174, 716
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 533, 545
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 2 cut(s) 533, 545
BaeGI GKGCMC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 353
BccI CCATC 2 cut(s) 338, 682
BceAI ACGGC 1 cut(s) 773
BcgI CGANNNNNNTGC 4 cut(s) 585, 606, 619, 640
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 1 cut(s) 80
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 2 cut(s) 362, 636
BfmI CTRYAG 2 cut(s) 397, 469
BfuAI ACCTGC 2 cut(s) 190, 791
Bme1390I CCNGG 2 cut(s) 80, 112
Bme18I GGWCC 2 cut(s) 533, 545
BmgT120I GGNCC 2 cut(s) 533, 545
BmrFI CCNGG 2 cut(s) 80, 112
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 2 cut(s) 111, 182
BmuI ACTGGG 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 146, 167
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 111, 548
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 542
Bse1I ACTGG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 111, 548
BseLI CCNNNNNNNGG 2 cut(s) 79, 542
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 353
BshFI GGCC 1 cut(s) 760
BshVI ATCGAT 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 2 cut(s) 29, 80
BslFI GGGAC 2 cut(s) 597, 678
BslI CCNNNNNNNGG 2 cut(s) 79, 542
BsmFI GGGAC 2 cut(s) 597, 678
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 3 cut(s) 232, 266, 617
Bsp19I CCATGG 1 cut(s) 548
BspANI GGCC 1 cut(s) 760
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 320
BspMAI CTGCAG 2 cut(s) 401, 473
BspMI ACCTGC 2 cut(s) 190, 791
BspPI GGATC 3 cut(s) 227, 261, 612
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 111, 548
BssMI GATC 3 cut(s) 232, 266, 617
BssT1I CCWWGG 1 cut(s) 548
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 1 cut(s) 360
BstAPI GCANNNNNTGC 3 cut(s) 405, 477, 660
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 548
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 3 cut(s) 235, 269, 620
BstMBI GATC 3 cut(s) 232, 266, 617
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 807
BstSCI CCNGG 2 cut(s) 78, 110
BstSFI CTRYAG 2 cut(s) 397, 469
BstSLI GKGCMC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 320
BsuRI GGCC 1 cut(s) 760
BsuTUI ATCGAT 1 cut(s) 320
BtgI CCRYGG 1 cut(s) 548
BtgZI GCGATG 1 cut(s) 610
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 535
BveI ACCTGC 2 cut(s) 190, 791
Cac8I GCNNGC 1 cut(s) 95
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 533, 545
ClaI ATCGAT 1 cut(s) 320
Csp6I GTAC 3 cut(s) 76, 755, 801
CviJI RGCY 6 cut(s) 8, 289, 312, 396, 444, 760
CviKI_1 RGCY 6 cut(s) 8, 289, 312, 396, 444, 760
CviQI GTAC 3 cut(s) 76, 755, 801
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 234, 268, 619
DpnII GATC 3 cut(s) 232, 266, 617
DrdI GACNNNNNNGTC 1 cut(s) 270
DseDI GACNNNNNNGTC 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 533, 545
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 548
FaqI GGGAC 2 cut(s) 597, 678
FspBI CTAG 2 cut(s) 362, 636
GlaI GCGC 1 cut(s) 98
HaeIII GGCC 1 cut(s) 760
HapII CCGG 2 cut(s) 29, 80
HhaI GCGC 1 cut(s) 99
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 1 cut(s) 226
HpaII CCGG 2 cut(s) 29, 80
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 2 cut(s) 120, 750
Hpy188III TCNNGA 4 cut(s) 146, 189, 230, 695
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 4 cut(s) 48, 185, 588, 745
HpyCH4III ACNGT 1 cut(s) 557
HpyF3I CTNAG 1 cut(s) 9
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 3 cut(s) 232, 266, 617
LmnI GCTCC 2 cut(s) 31, 383
LweI GCATC 2 cut(s) 111, 182
MaeI CTAG 2 cut(s) 362, 636
MaeIII GTNAC 2 cut(s) 217, 788
MalI GATC 3 cut(s) 234, 268, 619
MboI GATC 3 cut(s) 232, 266, 617
MboII GAAGA 1 cut(s) 347
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 4 cut(s) 135, 559, 658, 712
MnlI CCTC 3 cut(s) 123, 142, 145
MroXI GAANNNNTTC 2 cut(s) 174, 716
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 646
MspA1I CMGCKG 5 cut(s) 411, 435, 459, 483, 507
MspI CCGG 2 cut(s) 29, 80
MspR9I CCNGG 2 cut(s) 80, 112
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 1 cut(s) 112
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 548
NdeII GATC 3 cut(s) 232, 266, 617
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 807
PciI ACATGT 1 cut(s) 803
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PctI GAATGC 1 cut(s) 303
PdmI GAANNNNTTC 2 cut(s) 174, 716
PfeI GAWTC 1 cut(s) 226
PscI ACATGT 1 cut(s) 803
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspPI GGNCC 2 cut(s) 533, 545
PstI CTGCAG 2 cut(s) 401, 473
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 3 cut(s) 77, 756, 802
RsaNI GTAC 3 cut(s) 76, 755, 801
RseI CAYNNNNRTG 1 cut(s) 646
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 3 cut(s) 232, 266, 617
Sau96I GGNCC 2 cut(s) 533, 545
ScrFI CCNGG 2 cut(s) 80, 112
SduI GDGCHC 1 cut(s) 353
SetI ASST 7 cut(s) 10, 184, 247, 314, 363, 756, 785
SfaNI GCATC 2 cut(s) 111, 182
SfcI CTRYAG 2 cut(s) 397, 469
SinI GGWCC 2 cut(s) 533, 545
SmiMI CAYNNNNRTG 1 cut(s) 646
SmlI CTYRAG 2 cut(s) 125, 146
SmoI CTYRAG 2 cut(s) 125, 146
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 4 cut(s) 135, 559, 658, 712
SspMI CTAG 2 cut(s) 362, 636
StyD4I CCNGG 2 cut(s) 78, 110
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 1 cut(s) 557
TaqI TCGA 2 cut(s) 253, 320
TasI AATT 4 cut(s) 135, 559, 658, 712
TatI WGTACW 1 cut(s) 800
TauI GCSGC 3 cut(s) 49, 52, 70
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 8 cut(s) 393, 417, 465, 489, 513, 630, 636, 678
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 535
VneI GTGCAC 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 533, 545
XceI RCATGY 1 cut(s) 807
XmnI GAANNNNTTC 2 cut(s) 174, 716
XspI CTAG 2 cut(s) 362, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.