Rroxscaffold_2G00146480

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007422
Physical Location & Seq
Forward (+)
84354974 .. 84358529
3556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146480.1

Sequence Viewer

Length: 801 bp
ATGGCAGCTGAGTCTGGTTGTTCTGCTCCGGTTGTGCCTTCTCTGCCGCCGCCAACTCCAAAGTCGCCGCCCCAGTACCCGGATTTGTATGGCAAGCGCAGAGAAACCGCCAGGGTTCAGATGCTTGAGAGGGAAATTGGGTTTCTTGAGGAGGAACTAAAATCTGTTGAACGCCTTCAACCTGCTTCACGATGCTGCAAAGAGATTGCTGATTTTGTGACTGCAAATCCAGATCCGTTAATACCTACAAATCGAAAGAAACAACGATCCTGTCGCTTTTGGAAATGGCTCTGTGGAATGCCCTGTTTTAGCTTGTCATCGATTTGCTGTTGCTGCTGTTGTGATGGGTGCTCTCTTCACCTAGAAATGCCACACTGCTCCTGCTGCGGTTCATGCAGCGGTCCAGGCTGCGGTTCATGCAGCGGGTCAGGCTGCGGTTCATGCAGCGGTAAATGCTGTGGTTCATGCAGCGGTAAATGCTGTGGTGCATGCAGCGGAAAATGCTGTGGTTCATGCAGCGGTTCATGCTGCGGTCCATGTAACTGTAATTCGTGTTTCAGTTGCCCTTCACTACCAAAGTGGCGATGTTGCTGCTCATGTCCCCGATCCCGTTGCTGCAAAACTAGTTCCTGTTCATGCAGCAGAAATTGCTGCATTTTACCATCATGTTCGTGTTCATGTCCCGATTGCTCTTGTTTGAATTGTTTCAAATGGAAATGCTCTTGTCCTAAATGTCCGAAGGTATGGCCTTGTTGCTGTTGTAAAATAACCTGCTGTAACCCTTGCAGTACATGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-gamma

Protein Analysis

266

Amino Acids

28.24

Weight (kDa)

8.44

Isoelectric Point (pI)

66.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-gamma PF00631 37 - 107 2.3e-12 GGL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 190, 779
AclWI GGATC 3 cut(s) 227, 261, 600
AfaI GTAC 2 cut(s) 77, 790
AfiI CCNNNNNNNGG 2 cut(s) 79, 410
AflIII ACRYGT 1 cut(s) 791
AgsI TTSAA 4 cut(s) 170, 179, 700, 709
AhlI ACTAGT 1 cut(s) 623
AjnI CCWGG 2 cut(s) 110, 403
AluBI AGCT 2 cut(s) 8, 312
AluI AGCT 2 cut(s) 8, 312
Alw21I GWGCWC 1 cut(s) 353
AlwI GGATC 3 cut(s) 227, 261, 600
AoxI GGCC 1 cut(s) 746
Asp700I GAANNNNTTC 2 cut(s) 174, 704
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 401, 533
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 2 cut(s) 401, 533
Bbv12I GWGCWC 1 cut(s) 353
BccI CCATC 2 cut(s) 338, 670
BcgI CGANNNNNNTGC 4 cut(s) 573, 594, 607, 628
BciT130I CCWGG 2 cut(s) 112, 405
BcnI CCSGG 1 cut(s) 80
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 2 cut(s) 362, 624
BfuAI ACCTGC 2 cut(s) 190, 779
Bme1390I CCNGG 3 cut(s) 80, 112, 405
Bme18I GGWCC 2 cut(s) 401, 533
BmgT120I GGNCC 2 cut(s) 401, 533
BmrFI CCNGG 3 cut(s) 80, 112, 405
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 2 cut(s) 111, 182
BmuI ACTGGG 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 146, 167
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 410
Bse1I ACTGG 1 cut(s) 73
BseBI CCWGG 2 cut(s) 112, 405
BseCI ATCGAT 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 79, 410
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 748
BshVI ATCGAT 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 2 cut(s) 29, 80
BslFI GGGAC 2 cut(s) 585, 666
BslI CCNNNNNNNGG 2 cut(s) 79, 410
BsmFI GGGAC 2 cut(s) 585, 666
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 1 cut(s) 748
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 3 cut(s) 232, 266, 605
BspANI GGCC 1 cut(s) 748
BspDI ATCGAT 1 cut(s) 320
BspMI ACCTGC 2 cut(s) 190, 779
BspPI GGATC 3 cut(s) 227, 261, 600
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 232, 266, 605
Bst2UI CCWGG 2 cut(s) 112, 405
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 360
BstAPI GCANNNNNTGC 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 95, 490
BstDEI CTNAG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 3 cut(s) 235, 269, 608
BstMBI GATC 3 cut(s) 232, 266, 605
BstNI CCWGG 2 cut(s) 112, 405
BstNSI RCATGY 2 cut(s) 492, 795
BstSCI CCNGG 3 cut(s) 78, 110, 403
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 320
BsuRI GGCC 1 cut(s) 748
BsuTUI ATCGAT 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 598
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 373
BveI ACCTGC 2 cut(s) 190, 779
Cac8I GCNNGC 2 cut(s) 95, 490
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 401, 533
ClaI ATCGAT 1 cut(s) 320
Csp6I GTAC 2 cut(s) 76, 789
CviJI RGCY 6 cut(s) 8, 289, 312, 408, 432, 748
CviKI_1 RGCY 6 cut(s) 8, 289, 312, 408, 432, 748
CviQI GTAC 2 cut(s) 76, 789
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 234, 268, 607
DpnII GATC 3 cut(s) 232, 266, 605
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco47I GGWCC 2 cut(s) 401, 533
EcoRII CCWGG 2 cut(s) 110, 403
FaqI GGGAC 2 cut(s) 585, 666
FauI CCCGC 1 cut(s) 416
FspBI CTAG 2 cut(s) 362, 624
GlaI GCGC 1 cut(s) 98
HaeIII GGCC 1 cut(s) 748
HapII CCGG 2 cut(s) 29, 80
HhaI GCGC 1 cut(s) 99
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 1 cut(s) 11
HpaII CCGG 2 cut(s) 29, 80
HphI GGTGA 1 cut(s) 350
Hpy188I TCNGA 2 cut(s) 120, 738
Hpy188III TCNNGA 4 cut(s) 146, 189, 230, 683
HpyAV CCTTC 4 cut(s) 48, 185, 576, 733
HpyCH4III ACNGT 1 cut(s) 545
HpyF3I CTNAG 1 cut(s) 9
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 3 cut(s) 232, 266, 605
LmnI GCTCC 2 cut(s) 31, 383
LweI GCATC 2 cut(s) 111, 182
MaeI CTAG 2 cut(s) 362, 624
MaeIII GTNAC 3 cut(s) 217, 539, 776
MalI GATC 3 cut(s) 234, 268, 607
MboI GATC 3 cut(s) 232, 266, 605
MboII GAAGA 1 cut(s) 347
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 4 cut(s) 135, 547, 646, 700
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 123, 142, 145
MroXI GAANNNNTTC 2 cut(s) 174, 704
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 670
MspA1I CMGCKG 7 cut(s) 8, 399, 423, 447, 471, 495, 519
MspI CCGG 2 cut(s) 29, 80
MspR9I CCNGG 3 cut(s) 80, 112, 405
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 2 cut(s) 112, 405
NciI CCSGG 1 cut(s) 80
NdeII GATC 3 cut(s) 232, 266, 605
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 2 cut(s) 492, 795
PaeI GCATGC 1 cut(s) 492
PciI ACATGT 1 cut(s) 791
PctI GAATGC 1 cut(s) 303
PdmI GAANNNNTTC 2 cut(s) 174, 704
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PscI ACATGT 1 cut(s) 791
Psp6I CCWGG 2 cut(s) 110, 403
PspGI CCWGG 2 cut(s) 110, 403
PspPI GGNCC 2 cut(s) 401, 533
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 2 cut(s) 77, 790
RsaNI GTAC 2 cut(s) 76, 789
RseI CAYNNNNRTG 1 cut(s) 670
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 3 cut(s) 232, 266, 605
Sau96I GGNCC 2 cut(s) 401, 533
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 3 cut(s) 80, 112, 405
SduI GDGCHC 1 cut(s) 353
SetI ASST 7 cut(s) 10, 184, 247, 314, 363, 744, 773
SfaNI GCATC 2 cut(s) 111, 182
SinI GGWCC 2 cut(s) 401, 533
SmiMI CAYNNNNRTG 1 cut(s) 670
SmlI CTYRAG 2 cut(s) 125, 146
SmoI CTYRAG 2 cut(s) 125, 146
SpeI ACTAGT 1 cut(s) 623
SphI GCATGC 1 cut(s) 492
Sse9I AATT 4 cut(s) 135, 547, 646, 700
SspMI CTAG 2 cut(s) 362, 624
StyD4I CCNGG 3 cut(s) 78, 110, 403
TaaI ACNGT 1 cut(s) 545
TaqI TCGA 2 cut(s) 253, 320
TasI AATT 4 cut(s) 135, 547, 646, 700
TatI WGTACW 1 cut(s) 788
TauI GCSGC 3 cut(s) 49, 52, 70
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 380
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 8 cut(s) 381, 405, 429, 453, 501, 513, 624, 666
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 401, 533
XceI RCATGY 2 cut(s) 492, 795
XmnI GAANNNNTTC 2 cut(s) 174, 704
XspI CTAG 2 cut(s) 362, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.