Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007422

Physical Location & Seq

Genomic Coordinates Reverse (-)

7933108 .. 7936758

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG098600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCAGCTCAGTCTGGTTGTTCTGCTCCGGTTGTGCCTTCTCTGCCGCCGCCAACTCCAAAGTCGCCGCCCCAGTACCCGGATTTGTATGGCAAGCGCAGAGAAACCGCCAGGGTTCAGATGCTTGAGAGGGAAATTGGGTTTCTTGAGGAGGAACTAAAATCTGTTGAACGCCTTCAACCTGCTTCCCGATGCTGCAAAGAGATTGCTGATTTTGTGACTGCGAATCCAGATCCGTTAATACCTACAAATCGAAAGAAACGACGATCCTGTCGCTTTTGGAAATGGCTCTGTGGAATGCCCTGTTTTAGCTTGTCATCGATTTGCTGTTGCTGCTGTTGTGATGGGTGCACTCTTCACCTAGAAATGCCACGCTGCTCCTGCTGCGGTTCAGGCTGCAGTTCATGCAGCGCGGTAAATGCTGCGGTTCATGCAGTGGTCCATGCTGCGGTCCATGGAACTGTAATTCGTGTTTCAGTTGCCCTTCACTACCAAAGTGGCGATGTTGCTGCTCATGTCCCCGATCCCGTTGCTGCAAAACTAGTTCATGTTCATGCAGCAGAAATTGCTGCATTTTACCATCGTGTTCGTGTTCATGTCCCGATTGCTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

205

Amino Acids

22.25

Weight (kDa)

8.54

Isoelectric Point (pI)

61.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-gamma	PF00631	37 - 107	1.8e-12	GGL domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20635 AT5G20635
fragaria_vesca	FvH4_1g08850 FvH4_1g08850
malus_domestica	MD02G1093600.v1.1 MD15G1218900.v1.1
prunus_persica	Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1
pyrus_communis	pycom02g07380 pycom15g19410
rosa_chinensis	RchiOBHm_Chr2g0095321 RchiOBHm_Chr6g0246401 RchiOBHm_Chr6g0246621 RchiOBHm_Chr6g0246681
rosa_laevigata	RLG00000016554
rosa_roxburghii	Rroxscaffold_2G00146480
rosa_rugosa	Rorug02G0049300
rosa_samantha	Rh2AG097700 Rh2BG098900 Rh2CG101000 Rh2DG098600
rosa_wichuraiana	Rw2G007370 Rw6G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	190
AccII	CGCG	1 cut(s)	413
AciI	CCGC	8 cut(s)	47, 50, 68, 108, 387, 413, 425, 449
AclWI	GGATC	3 cut(s)	227, 261, 518
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	79, 448
AgsI	TTSAA	2 cut(s)	170, 179
AhlI	ACTAGT	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	8, 312
AluI	AGCT	2 cut(s)	8, 312
Alw21I	GWGCWC	1 cut(s)	353
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	3 cut(s)	227, 261, 518
ApaLI	GTGCAC	1 cut(s)	349
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	99, 413
AspS9I	GGNCC	2 cut(s)	439, 451
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	439, 451
BaeGI	GKGCMC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	353
BccI	CCATC	2 cut(s)	338, 588
BcgI	CGANNNNNNTGC	4 cut(s)	491, 512, 525, 546
BciT130I	CCWGG	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	80
BcuI	ACTAGT	1 cut(s)	541
BfaI	CTAG	2 cut(s)	362, 542
BfmI	CTRYAG	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	80, 112
Bme18I	GGWCC	2 cut(s)	439, 451
BmgT120I	GGNCC	2 cut(s)	439, 451
BmrFI	CCNGG	2 cut(s)	80, 112
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	111, 182
BmuI	ACTGGG	1 cut(s)	67
BpuEI	CTTGAG	2 cut(s)	146, 167
BpuMI	CCSGG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	111, 454
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 448
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	111, 454
BseLI	CCNNNNNNNGG	2 cut(s)	79, 448
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	413
BshVI	ATCGAT	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	29, 80
BslFI	GGGAC	2 cut(s)	503, 584
BslI	CCNNNNNNNGG	2 cut(s)	79, 448
BsmFI	GGGAC	2 cut(s)	503, 584
BsmI	GAATGC	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	232, 266, 523
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	8 cut(s)	47, 50, 68, 108, 387, 413, 425, 449
BspCNI	CTCAG	1 cut(s)	22
BspDI	ATCGAT	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	413
BspMAI	CTGCAG	1 cut(s)	401
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	3 cut(s)	227, 261, 518
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	111, 454
BssMI	GATC	3 cut(s)	232, 266, 523
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	360
BstAPI	GCANNNNNTGC	2 cut(s)	405, 566
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	2 cut(s)	99, 413
BstKTI	GATC	3 cut(s)	235, 269, 526
BstMBI	GATC	3 cut(s)	232, 266, 523
BstMWI	GCNNNNNNNGC	9 cut(s)	43, 333, 381, 384, 393, 405, 419, 431, 566
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	78, 110
BstSFI	CTRYAG	1 cut(s)	397
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	413
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	320
BsuTUI	ATCGAT	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	454
BtgZI	GCGATG	1 cut(s)	516
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	2 cut(s)	99, 413
Cfr13I	GGNCC	2 cut(s)	439, 451
ClaI	ATCGAT	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	8 cut(s)	405, 431, 443, 455, 515, 548, 554, 596
CviJI	RGCY	4 cut(s)	8, 289, 312, 396
CviKI_1	RGCY	4 cut(s)	8, 289, 312, 396
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	3 cut(s)	234, 268, 525
DpnII	GATC	3 cut(s)	232, 266, 523
DrdI	GACNNNNNNGTC	1 cut(s)	270
DseDI	GACNNNNNNGTC	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	454
Eco47I	GGWCC	2 cut(s)	439, 451
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	8 cut(s)	408, 434, 446, 458, 518, 551, 557, 599
FaiI	YATR	9 cut(s)	90, 406, 432, 444, 456, 516, 549, 555, 597
FaqI	GGGAC	2 cut(s)	503, 584
FatI	CATG	8 cut(s)	404, 430, 442, 454, 514, 547, 553, 595
FspBI	CTAG	2 cut(s)	362, 542
GlaI	GCGC	2 cut(s)	98, 412
HapII	CCGG	2 cut(s)	29, 80
HhaI	GCGC	2 cut(s)	99, 413
Hin1II	CATG	8 cut(s)	408, 434, 446, 458, 518, 551, 557, 599
Hin6I	GCGC	2 cut(s)	97, 411
HinP1I	GCGC	2 cut(s)	97, 411
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	29, 80
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	4 cut(s)	146, 189, 230, 601
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	3 cut(s)	48, 185, 494
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	8 cut(s)	198, 351, 399, 408, 434, 536, 557, 572
HpyF10VI	GCNNNNNNNGC	9 cut(s)	43, 333, 381, 384, 393, 405, 419, 431, 566
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	8 cut(s)	408, 434, 446, 458, 518, 551, 557, 599
HspAI	GCGC	2 cut(s)	97, 411
Kzo9I	GATC	3 cut(s)	232, 266, 523
LmnI	GCTCC	2 cut(s)	31, 383
LweI	GCATC	2 cut(s)	111, 182
MaeI	CTAG	2 cut(s)	362, 542
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	234, 268, 525
MboI	GATC	3 cut(s)	232, 266, 523
MboII	GAAGA	1 cut(s)	347
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	3 cut(s)	135, 465, 564
MnlI	CCTC	3 cut(s)	123, 142, 145
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	552
MspI	CCGG	2 cut(s)	29, 80
MspR9I	CCNGG	2 cut(s)	80, 112
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	9 cut(s)	43, 333, 381, 384, 393, 405, 419, 431, 566
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	232, 266, 523
NlaIII	CATG	8 cut(s)	408, 434, 446, 458, 518, 551, 557, 599
NmuCI	GTSAC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	439, 451
PstI	CTGCAG	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	232, 266, 523
Sau96I	GGNCC	2 cut(s)	439, 451
ScrFI	CCNGG	2 cut(s)	80, 112
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	5 cut(s)	10, 184, 247, 314, 363
SfaNI	GCATC	2 cut(s)	111, 182
SfcI	CTRYAG	1 cut(s)	397
SinI	GGWCC	2 cut(s)	439, 451
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	2 cut(s)	125, 146
SmoI	CTYRAG	2 cut(s)	125, 146
SpeI	ACTAGT	1 cut(s)	541
Sse9I	AATT	3 cut(s)	135, 465, 564
SsiI	CCGC	8 cut(s)	47, 50, 68, 108, 387, 413, 425, 449
SspMI	CTAG	2 cut(s)	362, 542
StyD4I	CCNGG	2 cut(s)	78, 110
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	253, 320
TasI	AATT	3 cut(s)	135, 465, 564
TauI	GCSGC	3 cut(s)	49, 52, 70
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	5 cut(s)	393, 419, 536, 542, 584
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	441
VneI	GTGCAC	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	439, 451
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	2 cut(s)	362, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.