Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007422

Physical Location & Seq

Genomic Coordinates Forward (+)

2079437 .. 2082381

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCTGAAGCTTCATATGTATAAGATTGGTTTGTCCACCAACACAGGAGTCTTGCTAATTGGCCAAGAGGAACTAAAATCTGTTGAACGCCTCCAACCTGCTGCCCGATGCTGCAAAGAGATTGCTGATTTTGTGACTGCGAATCCAGATCCGTTGATACCAACAAATCGAAAGAAACAACGATCCTGTCACTTTTGGAAATGGCTCTGTGGAATGCCCTGTTTTAGCTTGTCATCGATTTGCTGTTGCTGCTGTTGTGATGGGTGCTCTCTTCACCTAGAAATGCCACGCTGCTCCTGCTGTGGTTCATGCAGTGGTTCAGACTGTGGTTCATGCAGCGGTGAATGCTGTGTTTTATGCAAGGGTTCATGCTGCAGTCCATGTAACTGTAATTCGTGTTTCAGTTGCCCTTCACTACCAAAGTGGCGATGTTGCTGCTCATGTCCCCGATCCCATTGCTGCAAAACTAGTTCATGTTCATGCAGCAGAAATTGCTGCATTTTACCATTGTGTTCGTGCTCATGTCCCGATTGCTCTTGTTTGAATTGTTTCAAATGGAAATGCTCTTGTCCTAAATGTCTGAAGGTACGGCCTTGTTGCTGTTGTAAAATAACCTGCTGTAACCCTTGCAGTACATGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

214

Amino Acids

23.26

Weight (kDa)

8.44

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20635 AT5G20635
fragaria_vesca	FvH4_1g08850 FvH4_1g08850
malus_domestica	MD02G1093600.v1.1 MD15G1218900.v1.1
prunus_persica	Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1 Prupe.7G197000_v2.0.a1
pyrus_communis	pycom02g07380 pycom15g19410
rosa_chinensis	RchiOBHm_Chr2g0095321 RchiOBHm_Chr6g0246401 RchiOBHm_Chr6g0246621 RchiOBHm_Chr6g0246681
rosa_laevigata	RLG00000016554
rosa_roxburghii	Rroxscaffold_2G00146480
rosa_rugosa	Rorug02G0049300
rosa_samantha	Rh2AG097700 Rh2BG098900 Rh2CG101000 Rh2DG098600
rosa_wichuraiana	Rw2G007370 Rw6G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 623
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	3 cut(s)	143, 177, 444
AcoI	YGGCCR	1 cut(s)	61
AcuI	CTGAAG	2 cut(s)	26, 602
AfaI	GTAC	2 cut(s)	588, 634
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	3 cut(s)	86, 544, 553
AhlI	ACTAGT	1 cut(s)	467
AluBI	AGCT	2 cut(s)	10, 228
AluI	AGCT	2 cut(s)	10, 228
Alw21I	GWGCWC	2 cut(s)	269, 521
AlwI	GGATC	3 cut(s)	143, 177, 444
AoxI	GGCC	2 cut(s)	61, 590
Asp700I	GAANNNNTTC	1 cut(s)	548
AsuHPI	GGTGA	2 cut(s)	266, 353
BalI	TGGCCA	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	269, 521
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	605
BcgI	CGANNNNNNTGC	4 cut(s)	417, 438, 451, 472
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	2 cut(s)	278, 468
BfmI	CTRYAG	1 cut(s)	373
BfuAI	ACCTGC	2 cut(s)	106, 623
BmsI	GCATC	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	454
BseCI	ATCGAT	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	63, 592
BshVI	ATCGAT	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	269, 521
BslFI	GGGAC	2 cut(s)	429, 510
BsmFI	GGGAC	2 cut(s)	429, 510
BsmI	GAATGC	2 cut(s)	219, 350
BsnI	GGCC	2 cut(s)	63, 592
Bsp1286I	GDGCHC	2 cut(s)	269, 521
Bsp143I	GATC	3 cut(s)	148, 182, 449
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	2 cut(s)	63, 592
BspDI	ATCGAT	1 cut(s)	236
BspMAI	CTGCAG	1 cut(s)	377
BspMI	ACCTGC	2 cut(s)	106, 623
BspPI	GGATC	3 cut(s)	143, 177, 444
BsrDI	GCAATG	1 cut(s)	454
BssMI	GATC	3 cut(s)	148, 182, 449
Bst4CI	ACNGT	2 cut(s)	326, 389
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	492
BstKTI	GATC	3 cut(s)	151, 185, 452
BstMBI	GATC	3 cut(s)	148, 182, 449
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 297, 345, 492
BstNSI	RCATGY	1 cut(s)	639
BstSFI	CTRYAG	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	63, 592
BsuTUI	ATCGAT	1 cut(s)	236
BtgZI	GCGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	2 cut(s)	106, 623
ClaI	ATCGAT	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	587, 633
CviAII	CATG	9 cut(s)	309, 333, 369, 381, 441, 474, 480, 522, 636
CviJI	RGCY	5 cut(s)	10, 63, 205, 228, 592
CviKI_1	RGCY	5 cut(s)	10, 63, 205, 228, 592
CviQI	GTAC	2 cut(s)	587, 633
DpnI	GATC	3 cut(s)	150, 184, 451
DpnII	GATC	3 cut(s)	148, 182, 449
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco57I	CTGAAG	2 cut(s)	26, 602
FaeI	CATG	9 cut(s)	312, 336, 372, 384, 444, 477, 483, 525, 639
FaqI	GGGAC	2 cut(s)	429, 510
FatI	CATG	9 cut(s)	308, 332, 368, 380, 440, 473, 479, 521, 635
FauNDI	CATATG	1 cut(s)	15
FspBI	CTAG	2 cut(s)	278, 468
HaeIII	GGCC	2 cut(s)	63, 592
Hin1II	CATG	9 cut(s)	312, 336, 372, 384, 444, 477, 483, 525, 639
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	48, 142
HphI	GGTGA	2 cut(s)	266, 353
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	322, 582
Hpy188III	TCNNGA	2 cut(s)	146, 527
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	2 cut(s)	420, 577
HpyCH4III	ACNGT	2 cut(s)	326, 389
HpyCH4V	TGCA	9 cut(s)	114, 312, 336, 360, 375, 462, 483, 498, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 297, 345, 492
Hsp92II	CATG	9 cut(s)	312, 336, 372, 384, 444, 477, 483, 525, 639
Kzo9I	GATC	3 cut(s)	148, 182, 449
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	7 cut(s)	30, 111, 159, 199, 232, 310, 628
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	278, 468
MaeIII	GTNAC	4 cut(s)	133, 188, 383, 620
MalI	GATC	3 cut(s)	150, 184, 451
MboI	GATC	3 cut(s)	148, 182, 449
MboII	GAAGA	1 cut(s)	263
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	2 cut(s)	269, 521
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	4 cut(s)	57, 391, 490, 544
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	61, 101
Mox20I	TGGCCA	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	478
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	219, 350
MwoI	GCNNNNNNNGC	4 cut(s)	249, 297, 345, 492
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	3 cut(s)	148, 182, 449
NlaIII	CATG	9 cut(s)	312, 336, 372, 384, 444, 477, 483, 525, 639
NmuCI	GTSAC	2 cut(s)	133, 188
NspI	RCATGY	1 cut(s)	639
PciI	ACATGT	1 cut(s)	635
PctI	GAATGC	2 cut(s)	219, 350
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PscI	ACATGT	1 cut(s)	635
PstI	CTGCAG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	2 cut(s)	588, 634
RsaNI	GTAC	2 cut(s)	587, 633
RseI	CAYNNNNRTG	1 cut(s)	478
Sau3AI	GATC	3 cut(s)	148, 182, 449
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	269, 521
SetI	ASST	6 cut(s)	12, 100, 230, 279, 588, 617
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	478
SpeI	ACTAGT	1 cut(s)	467
Sse9I	AATT	4 cut(s)	57, 391, 490, 544
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	2 cut(s)	278, 468
TaaI	ACNGT	2 cut(s)	326, 389
TaqI	TCGA	2 cut(s)	169, 236
TasI	AATT	4 cut(s)	57, 391, 490, 544
TatI	WGTACW	1 cut(s)	632
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	133, 188
Tsp45I	GTSAC	2 cut(s)	133, 188
TspDTI	ATGAA	5 cut(s)	297, 321, 357, 462, 468
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	319
XceI	RCATGY	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	2 cut(s)	278, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.