Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008471

Physical Location & Seq

Genomic Coordinates Forward (+)

5289113 .. 5289562

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09717.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGAAAGAAGATAACTGTTGATTCAGCTACTCTTTTCAATAAGGGGCTAGAAGTCATCGAAGCCCATTACTTGTACGGAGCTGATTATGATGATATCGAGATTGTAATTCATCCACAATCCATCATACATTCGATGATTGAAACACAGGATTCATCTGTTCTAGCACAGTTGGGGTGGCCTGATATGCGCTTGCCAATCCTCTACACCATGCATGGCCAGAGAGAATCTATTGCTCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

82

Amino Acids

9.14

Weight (kDa)

5.09

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_redisom_C	PF08436	1 - 26	7.9e-11	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62790 AT5G62790
fragaria_vesca	FvH4_1g09716 FvH4_1g09717 FvH4_3g27741 FvH4_4g01210 FvH4_5g05300 FvH4_5g38682
malus_domestica	MD06G1174000.v1.1 MD14G1180500.v1.1
prunus_persica	Prupe.5G174000_v2.0.a1
pyrus_communis	pycom06g15530 pycom14g15050
rosa_chinensis	RchiOBHm_Chr7g0193571
rosa_laevigata	RLG00000004262
rosa_multiflora	Rmu_ssc0000035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262000
rosa_rugosa	Rorug07G0010200
rosa_samantha	Rh7AG137100 Rh7BG137400 Rh7CG140700 Rh7DG138500
rosa_wichuraiana	Rw7G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	217
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	40, 143
AluBI	AGCT	2 cut(s)	29, 83
AluI	AGCT	2 cut(s)	29, 83
AoxI	GGCC	2 cut(s)	179, 217
AspLEI	GCGC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	219
BccI	CCATC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	50, 164
BseGI	GGATG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	181, 219
BsnI	GGCC	2 cut(s)	181, 219
BspANI	GGCC	2 cut(s)	181, 219
Bst4CI	ACNGT	2 cut(s)	19, 171
BstC8I	GCNNGC	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	181, 219
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	211, 215
CviJI	RGCY	6 cut(s)	29, 49, 65, 83, 181, 219
CviKI_1	RGCY	6 cut(s)	29, 49, 65, 83, 181, 219
CviQI	GTAC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	216
FaeI	CATG	2 cut(s)	214, 218
FaiI	YATR	5 cut(s)	90, 128, 188, 212, 216
FatI	CATG	2 cut(s)	210, 214
FokI	GGATG	1 cut(s)	99
FspBI	CTAG	2 cut(s)	50, 164
GlaI	GCGC	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	181, 219
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	214, 218
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	23, 152, 227
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	19, 171
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	214, 218
HspAI	GCGC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	80, 241
LpnPI	CCDG	3 cut(s)	134, 195, 233
MaeI	CTAG	2 cut(s)	50, 164
MboII	GAAGA	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	1 cut(s)	108
MluNI	TGGCCA	1 cut(s)	219
MnlI	CCTC	1 cut(s)	212
Mox20I	TGGCCA	1 cut(s)	219
Mph1103I	ATGCAT	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	214, 218
NsiI	ATGCAT	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	23, 152, 227
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SetI	ASST	2 cut(s)	31, 85
Sse9I	AATT	1 cut(s)	108
SspMI	CTAG	2 cut(s)	50, 164
TaaI	ACNGT	2 cut(s)	19, 171
TaqI	TCGA	3 cut(s)	60, 99, 134
TasI	AATT	1 cut(s)	108
TfiI	GAWTC	3 cut(s)	23, 152, 227
TspDTI	ATGAA	2 cut(s)	101, 144
TspGWI	ACGGA	1 cut(s)	93
XspI	CTAG	2 cut(s)	50, 164
Zsp2I	ATGCAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.