Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008471

Physical Location & Seq

Genomic Coordinates Forward (+)

56112128 .. 56116359

Gene Structure 4232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGACAGGAGTTCTTAGTGCAGCAAATGAAAAGGCTGTGGAGATGTTTATCGATGAAAAAATTAGATATCTGGATATTTTCAAGGTTGTTGAGCTAACATGTGCCAAGCACAGGGCAGAACTCGTGACCTCACCTTCCCTCGAGGAAATTGTACATTATGATTTATGGGCAAGAGATTACGCTGCTAATCTGCAAAGCTCAACAAGTTCAACCCCTGTATTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

75

Amino Acids

8.42

Weight (kDa)

4.95

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXPR_C	PF13288	2 - 59	1.3e-12	DXP reductoisomerase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62790 AT5G62790
fragaria_vesca	FvH4_1g09716 FvH4_1g09717 FvH4_3g27741 FvH4_4g01210 FvH4_5g05300 FvH4_5g38682
malus_domestica	MD06G1174000.v1.1 MD14G1180500.v1.1
prunus_persica	Prupe.5G174000_v2.0.a1
pyrus_communis	pycom06g15530 pycom14g15050
rosa_chinensis	RchiOBHm_Chr7g0193571
rosa_laevigata	RLG00000004262
rosa_multiflora	Rmu_ssc0000035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262000
rosa_rugosa	Rorug07G0010200
rosa_samantha	Rh7AG137100 Rh7BG137400 Rh7CG140700 Rh7DG138500
rosa_wichuraiana	Rw7G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflIII	ACRYGT	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	82, 210
AluBI	AGCT	2 cut(s)	94, 198
AluI	AGCT	2 cut(s)	94, 198
Ama87I	CYCGRG	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	20, 182
AsuHPI	GGTGA	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	140
BauI	CACGAG	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	32, 169
BisI	GCNGC	2 cut(s)	21, 183
BlsI	GCNGC	2 cut(s)	22, 184
BmeT110I	CYCGRG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	47
BseCI	ATCGAT	1 cut(s)	51
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	32, 169
BsgI	GTGCAG	1 cut(s)	39
BshVI	ATCGAT	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	151
BssSI	CACGAG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	32, 169
Bsu15I	ATCGAT	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	2 cut(s)	99, 225
CviJI	RGCY	3 cut(s)	35, 94, 198
CviKI_1	RGCY	3 cut(s)	35, 94, 198
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	68
FaeI	CATG	2 cut(s)	102, 228
FaiI	YATR	4 cut(s)	100, 159, 166, 226
FatI	CATG	2 cut(s)	98, 224
Fnu4HI	GCNGC	2 cut(s)	21, 183
Fsp4HI	GCNGC	2 cut(s)	21, 183
GluI	GCNGC	2 cut(s)	21, 183
Hin1II	CATG	2 cut(s)	102, 228
HphI	GGTGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	71, 124
HpyAV	CCTTC	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	20, 193
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	102, 228
LpnPI	CCDG	2 cut(s)	56, 97
Lsp1109I	GCAGC	2 cut(s)	32, 169
MaeIII	GTNAC	1 cut(s)	124
MluCI	AATT	2 cut(s)	60, 147
MnlI	CCTC	3 cut(s)	136, 139, 149
NlaIII	CATG	2 cut(s)	102, 228
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	140
PciI	ACATGT	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	22, 184
PscI	ACATGT	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	140
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SatI	GCNGC	2 cut(s)	21, 183
SetI	ASST	5 cut(s)	87, 96, 131, 136, 200
Sfr274I	CTCGAG	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	60, 147
TaqI	TCGA	2 cut(s)	51, 141
TasI	AATT	2 cut(s)	60, 147
TatI	WGTACW	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	20, 182
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	42, 69
XceI	RCATGY	1 cut(s)	102
XhoI	CTCGAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.