Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008471

Physical Location & Seq

Genomic Coordinates Reverse (-)

20792056 .. 20793620

Gene Structure 1565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27741.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTGTTGGTGGGTTTGGAACCCAGGTATGGAGGAGATCCCTTTCTTTCTTTTTAATATCATTGTTGAGATATTGGACATAGTTCCGGATAAGTTCAGAGTTGTGGCCCTAGCAGCTGGCTCAAATGTTACTCTTCTTGTGGATCAGGTGAAGAGGTTCAAACCCAAACTAGTTGCTGTTAGAAATGAATCATTAGTTGATGAGCTTCAAGAGGCTCTATCTGGTTTAGAAGACAAGCCTGAGATCATTCCTGGGGAGCAAGGAGTCATTGAGGTTGCTCGGCACCCAGATGCAGTCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGACTGAGGCCTATAGTGGCTGCAATAGAAGCTGGGAAAGACATCGCTTTAGCCAATAAGGAGACTCTGATTGCTGGAGGCCCATTTGTTCTTCCTCTTGCGCACAAGCATAATGTGAAAATTCTTCCTGCTGATTCAGAACATTCTGCAATTTTTCAGGGATTGGCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

167

Amino Acids

17.93

Weight (kDa)

5.04

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	23 - 136	2.4e-35	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62790 AT5G62790
fragaria_vesca	FvH4_1g09716 FvH4_1g09717 FvH4_3g27741 FvH4_4g01210 FvH4_5g05300 FvH4_5g38682
malus_domestica	MD06G1174000.v1.1 MD14G1180500.v1.1
prunus_persica	Prupe.5G174000_v2.0.a1
pyrus_communis	pycom06g15530 pycom14g15050
rosa_chinensis	RchiOBHm_Chr7g0193571
rosa_laevigata	RLG00000004262
rosa_multiflora	Rmu_ssc0000035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262000
rosa_rugosa	Rorug07G0010200
rosa_samantha	Rh7AG137100 Rh7BG137400 Rh7CG140700 Rh7DG138500
rosa_wichuraiana	Rw7G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	85
AclWI	GGATC	2 cut(s)	31, 150
AcsI	RAATTY	1 cut(s)	447
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	160, 209
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	22, 250
AluBI	AGCT	3 cut(s)	116, 205, 359
AluI	AGCT	3 cut(s)	116, 205, 359
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	2 cut(s)	31, 150
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	4 cut(s)	105, 335, 406, 492
ApeKI	GCWGC	2 cut(s)	113, 347
ApoI	RAATTY	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	106, 407
AsuHPI	GGTGA	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	125, 334
BciT130I	CCWGG	2 cut(s)	24, 252
BcoDI	GTCTC	1 cut(s)	383
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	2 cut(s)	110, 170
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	114, 348
BlsI	GCNGC	2 cut(s)	115, 349
Bme1390I	CCNGG	2 cut(s)	24, 252
BmgT120I	GGNCC	2 cut(s)	106, 407
BmiI	GGNNCC	2 cut(s)	20, 284
BmrFI	CCNGG	2 cut(s)	24, 252
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	22, 251
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	24, 252
BseDI	CCNNGG	2 cut(s)	22, 251
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	231, 323
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	125, 334
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	4 cut(s)	107, 337, 408, 494
BshNI	GGYRCC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	383
BsnI	GGCC	4 cut(s)	107, 337, 408, 494
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	36, 142, 243
BspANI	GGCC	4 cut(s)	107, 337, 408, 494
BspCNI	CTCAG	2 cut(s)	232, 324
BspEI	TCCGGA	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	20, 284
BspPI	GGATC	2 cut(s)	31, 150
BspT107I	GGYRCC	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	22, 251
BssMI	GATC	3 cut(s)	36, 142, 243
Bst2UI	CCWGG	2 cut(s)	24, 252
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	2 cut(s)	138, 146
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	240, 332
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	3 cut(s)	39, 145, 246
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	36, 142, 243
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 356
BstNI	CCWGG	2 cut(s)	24, 252
BstSCI	CCNGG	2 cut(s)	22, 250
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	125, 334
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	4 cut(s)	107, 337, 408, 494
BtgZI	GCGATG	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	106, 407
DdeI	CTNAG	2 cut(s)	240, 332
DpnI	GATC	3 cut(s)	38, 144, 245
DpnII	GATC	3 cut(s)	36, 142, 243
Eam1104I	CTCTTC	2 cut(s)	138, 146
EarI	CTCTTC	2 cut(s)	138, 146
Eco147I	AGGCCT	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	22, 250
FaiI	YATR	4 cut(s)	29, 80, 341, 438
Fnu4HI	GCNGC	2 cut(s)	114, 348
Fsp4HI	GCNGC	2 cut(s)	114, 348
FspBI	CTAG	2 cut(s)	110, 170
FspI	TGCGCA	1 cut(s)	429
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	2 cut(s)	114, 348
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	4 cut(s)	107, 337, 408, 494
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	430
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HinfI	GANTC	4 cut(s)	188, 264, 391, 461
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	98, 396, 466
Hpy188III	TCNNGA	2 cut(s)	86, 209
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	4 cut(s)	293, 326, 350, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 356
HpyF3I	CTNAG	2 cut(s)	240, 332
HspAI	GCGC	1 cut(s)	428
Kpn2I	TCCGGA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	36, 142, 243
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	2 cut(s)	125, 334
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	110, 170
MaeIII	GTNAC	3 cut(s)	127, 295, 304
MalI	GATC	3 cut(s)	38, 144, 245
MboI	GATC	3 cut(s)	36, 142, 243
MboII	GAAGA	5 cut(s)	125, 163, 242, 410, 443
MflI	RGATCY	1 cut(s)	36
MluCI	AATT	2 cut(s)	447, 477
MlyI	GAGTC	2 cut(s)	273, 385
MnlI	CCTC	7 cut(s)	25, 147, 205, 265, 327, 398, 432
MroI	TCCGGA	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	24, 252
MvaI	CCWGG	2 cut(s)	24, 252
MwoI	GCNNNNNNNGC	2 cut(s)	113, 356
NdeII	GATC	3 cut(s)	36, 142, 243
NlaIV	GGNNCC	2 cut(s)	20, 284
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	295
NsbI	TGCGCA	1 cut(s)	429
PceI	AGGCCT	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	188, 461
PkrI	GCNGC	2 cut(s)	115, 349
PleI	GAGTC	2 cut(s)	272, 385
PpsI	GAGTC	2 cut(s)	272, 385
Psp6I	CCWGG	2 cut(s)	22, 250
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	22, 250
PspN4I	GGNNCC	2 cut(s)	20, 284
PspPI	GGNCC	2 cut(s)	106, 407
PsuI	RGATCY	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	114, 348
Sau3AI	GATC	3 cut(s)	36, 142, 243
Sau96I	GGNCC	2 cut(s)	106, 407
SchI	GAGTC	2 cut(s)	273, 385
ScrFI	CCNGG	2 cut(s)	24, 252
SetI	ASST	7 cut(s)	28, 118, 150, 158, 207, 276, 361
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	288
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	2 cut(s)	447, 477
SseBI	AGGCCT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	110, 170
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	22, 250
TaaI	ACNGT	1 cut(s)	301
TasI	AATT	2 cut(s)	447, 477
TfiI	GAWTC	2 cut(s)	188, 461
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	113, 347
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	201
XapI	RAATTY	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	110, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.