Prupe.5G174000_v2.0.a1

1-deoxy-D-xylulose 5-phosphate reductoisomerase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
14833501 .. 14838131
4631 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G174000.1

Sequence Viewer

Length: 1422 bp
ATGGCTCTCAATTTATTGTCTCCGGCTGAAATCAAAGCCATCTCTTTCTTGGATTCCACCAAGTCCACCCACCTCCCCAAGCTTCCAGGTGGGTTTGCTTTGAGGAGGAAAGATTGTAAAACAGTAGTTGGGAGAAGAATTCAATGCTCAGCAGCAGCACAGACACCTCCTCCAGCTTGGCCGGGACGTGCCGTTCTGGAGACAAGCCGCAGAACTTGGGATGGCCCAAAGCCTATCTCGATTGTTGGATCTACTGGTTCCATTGGAACCCAGACACTGGACATAGTGGCAGAGAACCCAGATAAATTCAGAATTGTAGCTCTAGCAGCTGGTTCAAATGTAACTCTTCTTGTGGATCAGGTGAAGAGATTCAAGCCCCAACTTGTTGCAGTTAGAAATGAATCATTAGTTAATGAGCTTAATGAGGCCTTGGCTGATTTAGAAGAAAAGCCTGAGATTATTCCTGGCGAGCAAGGAGTTATTGAGGTTGCCCGCCACCCAGATGCAGTCACAGTAGTTACTGGAATAGTAGGTTGTGCAGGATTGAAGCCTACGGTGGCTGCAATTGAAGCAGGGAAAGACATAGCATTAGCCAATAAAGAGACCCTGATTGCTGGAGGTCCTTTTGTTCTTCCTCTTGCTCGCAAGCATAACGTGAAAATTCTTCCTGCTGATTCAGAACATTCTGCAATTTTTCAGTGTATCCAAGGCTTGCCAGAGGGTGCACTTCGGCGTATCATATTGACAGCGTCTGGTGGGTCTTTCAGGGATTGGCCTGTTGAGAAATTGAAAGAAGTTAAAGTTGCTGATGCTCTGAAGCATCCTAACTGGAATATGGGAAAGAAAATAACTGTTGATTCTGCTACTCTTTTCAATAAGGGTCTAGAAGTCATTGAAGCCCATTACTTGTTTGGAGCTGAATATGACAACATTGATATTGTGATTCATCCGCAATCTATTATACATTCAATGATTGAAACACAGGATTCATCTGTTCTGGCGCAATTGGGGTGGCCTGATATGCGCTTGCCAATTCTCTACACCATGTCATGGCCAGAGAGAATCTATTGCTCTGAACTAACATGGCCTCGTCTTGATCTGTGCAAGCTTGGTTCACTAACCTTTAAAGCTCCCGACAATGTGAAATACCCATCCATGGATCTTGCCTATGCTGCTGGACGGGCCGGTGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAAAAAGCTGTGGAGATGTTTATCAGTGAAAAAATCAGTTATCTTGATATTTTCAAGATTGTTGAGCTAACATGTGCTAAGCACCGGGCAGAACTAGTGGCCTCACCTTCCCTCGAGGAAATTATACATTATGATTTATGGGCACGAGATTATGCAGCTAATTTGCCGAGCGCTTCAAGTTCAATTCCTGTTTTTGCATGA

Protein Analysis

474

Amino Acids

51.38

Weight (kDa)

6.39

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1334
AccB1I GGYRCC 1 cut(s) 1190
AccB7I CCANNNNNTGG 2 cut(s) 277, 1050
AciI CCGC 3 cut(s) 208, 493, 950
AclWI GGATC 3 cut(s) 256, 363, 1167
AcoI YGGCCR 2 cut(s) 179, 1052
AcsI RAATTY 3 cut(s) 138, 305, 660
AcuI CTGAAG 1 cut(s) 836
AfeI AGCGCT 1 cut(s) 1393
AfiI CCNNNNNNNGG 3 cut(s) 277, 1050, 1156
AflIII ACRYGT 1 cut(s) 1292
AhlI ACTAGT 1 cut(s) 1315
AjiI CACGTC 1 cut(s) 188
AjnI CCWGG 2 cut(s) 85, 463
AloI GAACNNNNNNTCC 2 cut(s) 177, 209
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 3 cut(s) 24, 194, 596
Alw44I GTGCAC 1 cut(s) 723
AlwI GGATC 3 cut(s) 256, 363, 1167
AlwNI CAGNNNCTG 2 cut(s) 277, 752
Ama87I CYCGRG 1 cut(s) 1334
Aor51HI AGCGCT 1 cut(s) 1393
AoxI GGCC 9 cut(s) 179, 223, 426, 773, 1013, 1052, 1085, 1182, 1320
ApaLI GTGCAC 1 cut(s) 723
ApeKI GCWGC 7 cut(s) 152, 155, 326, 560, 1172, 1214, 1376
ApoI RAATTY 3 cut(s) 138, 305, 660
Asp700I GAANNNNTTC 1 cut(s) 368
AspLEI GCGC 3 cut(s) 1003, 1026, 1394
AspS9I GGNCC 3 cut(s) 224, 620, 1182
AsuC2I CCSGG 2 cut(s) 183, 1307
AsuHPI GGTGA 2 cut(s) 373, 1317
AvaI CYCGRG 1 cut(s) 1334
AvaII GGWCC 1 cut(s) 620
BaeGI GKGCMC 2 cut(s) 727, 1366
BalI TGGCCA 1 cut(s) 1054
BanI GGYRCC 1 cut(s) 1190
BauI CACGAG 1 cut(s) 1365
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 7 cut(s) 164, 167, 338, 547, 1159, 1226, 1388
BccI CCATC 3 cut(s) 47, 215, 1159
BceAI ACGGC 1 cut(s) 176
BciT130I CCWGG 2 cut(s) 87, 465
BciVI GTATCC 1 cut(s) 713
BcnI CCSGG 2 cut(s) 183, 1307
BcoDI GTCTC 3 cut(s) 24, 194, 596
BcuI ACTAGT 1 cut(s) 1315
BfaI CTAG 3 cut(s) 323, 884, 1316
BfoI RGCGCY 1 cut(s) 1395
BfuI GTATCC 1 cut(s) 713
BisI GCNGC 8 cut(s) 153, 156, 208, 327, 561, 1173, 1215, 1377
BlpI GCTNAGC 2 cut(s) 148, 1299
BlsI GCNGC 8 cut(s) 154, 157, 209, 328, 562, 1174, 1216, 1378
Bme1390I CCNGG 4 cut(s) 87, 183, 465, 1307
Bme18I GGWCC 1 cut(s) 620
BmeT110I CYCGRG 1 cut(s) 1334
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 224, 620, 1182
BmiI GGNNCC 3 cut(s) 259, 268, 1192
BmrFI CCNGG 4 cut(s) 87, 183, 465, 1307
BmsI GCATC 3 cut(s) 493, 799, 829
BpmI CTGGAG 3 cut(s) 156, 218, 636
Bpu1102I GCTNAGC 2 cut(s) 148, 1299
BpuMI CCSGG 2 cut(s) 183, 1307
BsaBI GATNNNNATC 1 cut(s) 1241
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 3 cut(s) 429, 706, 1155
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 1050, 1156
Bse118I RCCGGY 1 cut(s) 1184
Bse1I ACTGG 4 cut(s) 259, 282, 526, 833
Bse8I GATNNNNATC 1 cut(s) 1241
BseBI CCWGG 2 cut(s) 87, 465
BseDI CCNNGG 3 cut(s) 429, 706, 1155
BseGI GGATG 4 cut(s) 226, 820, 946, 1151
BseJI GATNNNNATC 1 cut(s) 1241
BseLI CCNNNNNNNGG 3 cut(s) 277, 1050, 1156
BseMII CTCAG 2 cut(s) 162, 444
BseNI ACTGG 4 cut(s) 259, 282, 526, 833
BseRI GAGGAG 2 cut(s) 118, 159
BseSI GKGCMC 2 cut(s) 727, 1366
BseXI GCAGC 7 cut(s) 164, 167, 338, 547, 1159, 1226, 1388
BsgI GTGCAG 2 cut(s) 558, 1233
BshFI GGCC 9 cut(s) 181, 225, 428, 775, 1015, 1054, 1087, 1184, 1322
BshNI GGYRCC 1 cut(s) 1190
BsiHKAI GWGCWC 1 cut(s) 727
BsiHKCI CYCGRG 1 cut(s) 1334
BsiSI CCGG 4 cut(s) 23, 182, 1185, 1306
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 277, 1050, 1156
BsmAI GTCTC 3 cut(s) 24, 194, 596
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 9 cut(s) 181, 225, 428, 775, 1015, 1054, 1087, 1184, 1322
Bso31I GGTCTC 1 cut(s) 596
BsoBI CYCGRG 1 cut(s) 1334
Bsp1286I GDGCHC 2 cut(s) 727, 1366
Bsp143I GATC 4 cut(s) 248, 355, 1096, 1159
Bsp1720I GCTNAGC 2 cut(s) 148, 1299
Bsp19I CCATGG 1 cut(s) 1155
BspACI CCGC 3 cut(s) 208, 493, 950
BspANI GGCC 9 cut(s) 181, 225, 428, 775, 1015, 1054, 1087, 1184, 1322
BspCNI CTCAG 2 cut(s) 161, 445
BspLI GGNNCC 3 cut(s) 259, 268, 1192
BspPI GGATC 3 cut(s) 256, 363, 1167
BspT107I GGYRCC 1 cut(s) 1190
BspTNI GGTCTC 1 cut(s) 596
BsrFI RCCGGY 1 cut(s) 1184
BsrI ACTGG 4 cut(s) 259, 282, 526, 833
BssAI RCCGGY 1 cut(s) 1184
BssECI CCNNGG 3 cut(s) 429, 706, 1155
BssMI GATC 4 cut(s) 248, 355, 1096, 1159
BssSI CACGAG 1 cut(s) 1365
BssT1I CCWWGG 3 cut(s) 429, 706, 1155
Bst2BI CACGAG 1 cut(s) 1365
Bst2UI CCWGG 2 cut(s) 87, 465
Bst4CI ACNGT 4 cut(s) 124, 514, 556, 853
Bst6I CTCTTC 2 cut(s) 351, 359
BstC8I GCNNGC 7 cut(s) 470, 493, 643, 647, 713, 1028, 1106
BstDEI CTNAG 4 cut(s) 148, 453, 1208, 1299
BstDSI CCRYGG 1 cut(s) 1155
BstF5I GGATG 4 cut(s) 226, 820, 946, 1151
BstH2I RGCGCY 1 cut(s) 1395
BstHHI GCGC 3 cut(s) 1003, 1026, 1394
BstKTI GATC 4 cut(s) 251, 358, 1099, 1162
BstMAI GTCTC 3 cut(s) 24, 194, 596
BstMBI GATC 4 cut(s) 248, 355, 1096, 1159
BstMWI GCNNNNNNNGC 5 cut(s) 326, 569, 1021, 1172, 1181
BstNI CCWGG 2 cut(s) 87, 465
BstNSI RCATGY 1 cut(s) 1296
BstSCI CCNGG 4 cut(s) 85, 181, 463, 1305
BstSLI GKGCMC 2 cut(s) 727, 1366
BstV1I GCAGC 7 cut(s) 164, 167, 338, 547, 1159, 1226, 1388
BstX2I RGATCY 2 cut(s) 248, 1159
BstYI RGATCY 2 cut(s) 248, 1159
BsuI GTATCC 1 cut(s) 713
BsuRI GGCC 9 cut(s) 181, 225, 428, 775, 1015, 1054, 1087, 1184, 1322
BtgI CCRYGG 1 cut(s) 1155
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 4 cut(s) 226, 820, 946, 1151
BtsIMutI CAGTG 3 cut(s) 275, 704, 1252
Cac8I GCNNGC 7 cut(s) 470, 493, 643, 647, 713, 1028, 1106
CaiI CAGNNNCTG 2 cut(s) 277, 752
CfoI GCGC 3 cut(s) 1003, 1026, 1394
Cfr10I RCCGGY 1 cut(s) 1184
Cfr13I GGNCC 3 cut(s) 224, 620, 1182
CseI GACGC 1 cut(s) 738
CspCI CAANNNNNGTGG 2 cut(s) 992, 1027
CviAII CATG 7 cut(s) 1045, 1050, 1083, 1156, 1195, 1293, 1419
DdeI CTNAG 4 cut(s) 148, 453, 1208, 1299
DpnI GATC 4 cut(s) 250, 357, 1098, 1161
DpnII GATC 4 cut(s) 248, 355, 1096, 1159
DraI TTTAAA 1 cut(s) 1126
EaeI YGGCCR 2 cut(s) 179, 1052
Eam1104I CTCTTC 2 cut(s) 351, 359
EarI CTCTTC 2 cut(s) 351, 359
Eco130I CCWWGG 3 cut(s) 429, 706, 1155
Eco147I AGGCCT 1 cut(s) 428
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 620
Eco47III AGCGCT 1 cut(s) 1393
Eco57I CTGAAG 1 cut(s) 836
Eco88I CYCGRG 1 cut(s) 1334
EcoO109I RGGNCCY 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 2 cut(s) 85, 463
EcoT14I CCWWGG 3 cut(s) 429, 706, 1155
ErhI CCWWGG 3 cut(s) 429, 706, 1155
FaeI CATG 7 cut(s) 1048, 1053, 1086, 1159, 1198, 1296, 1422
FaqI GGGAC 1 cut(s) 198
FatI CATG 7 cut(s) 1044, 1049, 1082, 1155, 1194, 1292, 1418
FauI CCCGC 1 cut(s) 500
Fnu4HI GCNGC 8 cut(s) 153, 156, 208, 327, 561, 1173, 1215, 1377
FokI GGATG 4 cut(s) 233, 807, 933, 1138
Fsp4HI GCNGC 8 cut(s) 153, 156, 208, 327, 561, 1173, 1215, 1377
FspBI CTAG 3 cut(s) 323, 884, 1316
GlaI GCGC 3 cut(s) 1002, 1025, 1393
GluI GCNGC 8 cut(s) 153, 156, 208, 327, 561, 1173, 1215, 1377
GsuI CTGGAG 3 cut(s) 156, 218, 636
HaeII RGCGCY 1 cut(s) 1395
HaeIII GGCC 9 cut(s) 181, 225, 428, 775, 1015, 1054, 1087, 1184, 1322
HapII CCGG 4 cut(s) 23, 182, 1185, 1306
HgaI GACGC 1 cut(s) 738
HhaI GCGC 3 cut(s) 1003, 1026, 1394
Hin1II CATG 7 cut(s) 1048, 1053, 1086, 1159, 1198, 1296, 1422
Hin6I GCGC 3 cut(s) 1001, 1024, 1392
HinP1I GCGC 3 cut(s) 1001, 1024, 1392
HindIII AAGCTT 2 cut(s) 80, 1106
HinfI GANTC 8 cut(s) 53, 369, 401, 674, 857, 943, 986, 1062
HpaII CCGG 4 cut(s) 23, 182, 1185, 1306
HphI GGTGA 2 cut(s) 373, 1317
Hpy166II GTNNAC 3 cut(s) 66, 725, 1115
Hpy188I TCNGA 4 cut(s) 311, 679, 816, 1075
Hpy188III TCNNGA 7 cut(s) 197, 238, 884, 1094, 1133, 1265, 1276
Hpy8I GTNNAC 3 cut(s) 66, 725, 1115
HpyAV CCTTC 1 cut(s) 1338
HpyCH4III ACNGT 4 cut(s) 124, 514, 556, 853
HpyCH4IV ACGT 2 cut(s) 187, 654
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 569, 1021, 1172, 1181
HpyF3I CTNAG 4 cut(s) 148, 453, 1208, 1299
HpySE526I ACGT 2 cut(s) 187, 654
Hsp92II CATG 7 cut(s) 1048, 1053, 1086, 1159, 1198, 1296, 1422
HspAI GCGC 3 cut(s) 1001, 1024, 1392
Kzo9I GATC 4 cut(s) 248, 355, 1096, 1159
LmnI GCTCC 2 cut(s) 914, 1135
Lsp1109I GCAGC 7 cut(s) 164, 167, 338, 547, 1159, 1226, 1388
LweI GCATC 3 cut(s) 493, 799, 829
MaeI CTAG 3 cut(s) 323, 884, 1316
MaeII ACGT 2 cut(s) 187, 654
MaeIII GTNAC 3 cut(s) 340, 508, 517
MalI GATC 4 cut(s) 250, 357, 1098, 1161
MboI GATC 4 cut(s) 248, 355, 1096, 1159
MboII GAAGA 6 cut(s) 147, 338, 376, 455, 623, 656
MfeI CAATTG 2 cut(s) 564, 1004
MflI RGATCY 2 cut(s) 248, 1159
MhlI GDGCHC 2 cut(s) 727, 1366
MlsI TGGCCA 1 cut(s) 1054
MluNI TGGCCA 1 cut(s) 1054
MmeI TCCRAC 1 cut(s) 226
Mox20I TGGCCA 1 cut(s) 1054
MroXI GAANNNNTTC 1 cut(s) 368
MscI TGGCCA 1 cut(s) 1054
MseI TTAA 4 cut(s) 411, 420, 798, 1125
MslI CAYNNNNRTG 1 cut(s) 501
Msp20I TGGCCA 1 cut(s) 1054
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 4 cut(s) 23, 182, 1185, 1306
MspR9I CCNGG 4 cut(s) 87, 183, 465, 1307
MunI CAATTG 2 cut(s) 564, 1004
MvaI CCWGG 2 cut(s) 87, 465
MwoI GCNNNNNNNGC 5 cut(s) 326, 569, 1021, 1172, 1181
NciI CCSGG 2 cut(s) 183, 1307
NcoI CCATGG 1 cut(s) 1155
NdeII GATC 4 cut(s) 248, 355, 1096, 1159
NlaIII CATG 7 cut(s) 1048, 1053, 1086, 1159, 1198, 1296, 1422
NlaIV GGNNCC 3 cut(s) 259, 268, 1192
NmeAIII GCCGAG 1 cut(s) 1413
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 1 cut(s) 1296
PaeR7I CTCGAG 1 cut(s) 1334
PceI AGGCCT 1 cut(s) 428
PciI ACATGT 1 cut(s) 1292
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 8 cut(s) 53, 369, 401, 674, 857, 943, 986, 1062
PflFI GACNNNGTC 1 cut(s) 748
PflMI CCANNNNNTGG 2 cut(s) 277, 1050
PkrI GCNGC 8 cut(s) 154, 157, 209, 328, 562, 1174, 1216, 1378
PpuMI RGGWCCY 1 cut(s) 620
PscI ACATGT 1 cut(s) 1292
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 85, 463
PspGI CCWGG 2 cut(s) 85, 463
PspN4I GGNNCC 3 cut(s) 259, 268, 1192
PspPI GGNCC 3 cut(s) 224, 620, 1182
PspPPI RGGWCCY 1 cut(s) 620
PspXI VCTCGAGB 1 cut(s) 1334
PstNI CAGNNNCTG 2 cut(s) 277, 752
PsuI RGATCY 2 cut(s) 248, 1159
PsyI GACNNNGTC 1 cut(s) 748
PvuII CAGCTG 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 4 cut(s) 411, 420, 798, 1125
SatI GCNGC 8 cut(s) 153, 156, 208, 327, 561, 1173, 1215, 1377
Sau3AI GATC 4 cut(s) 248, 355, 1096, 1159
Sau96I GGNCC 3 cut(s) 224, 620, 1182
ScrFI CCNGG 4 cut(s) 87, 183, 465, 1307
SduI GDGCHC 2 cut(s) 727, 1366
SfaNI GCATC 3 cut(s) 493, 799, 829
Sfr274I CTCGAG 1 cut(s) 1334
SinI GGWCC 1 cut(s) 620
SlaI CTCGAG 1 cut(s) 1334
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 1334
SmoI CTYRAG 1 cut(s) 1334
SpeI ACTAGT 1 cut(s) 1315
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 3 cut(s) 208, 493, 950
SspMI CTAG 3 cut(s) 323, 884, 1316
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 4 cut(s) 85, 181, 463, 1305
StyI CCWWGG 3 cut(s) 429, 706, 1155
TaaI ACNGT 4 cut(s) 124, 514, 556, 853
TaiI ACGT 2 cut(s) 190, 657
TaqI TCGA 2 cut(s) 239, 1335
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 8 cut(s) 53, 369, 401, 674, 857, 943, 986, 1062
Tru1I TTAA 4 cut(s) 411, 420, 798, 1125
Tru9I TTAA 4 cut(s) 411, 420, 798, 1125
TscAI CASTG 3 cut(s) 282, 704, 1252
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 7 cut(s) 152, 155, 326, 560, 1172, 1214, 1376
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 4 cut(s) 414, 935, 978, 1236
TspRI CASTG 3 cut(s) 282, 704, 1252
Tth111I GACNNNGTC 1 cut(s) 748
Van91I CCANNNNNTGG 2 cut(s) 277, 1050
VneI GTGCAC 1 cut(s) 723
VpaK11BI GGWCC 1 cut(s) 620
XapI RAATTY 3 cut(s) 138, 305, 660
XbaI TCTAGA 1 cut(s) 883
XceI RCATGY 1 cut(s) 1296
XcmI CCANNNNNNNNNTGG 2 cut(s) 46, 908
XhoI CTCGAG 1 cut(s) 1334
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 3 cut(s) 323, 884, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.