Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008471

Physical Location & Seq

Genomic Coordinates Reverse (-)

10962706 .. 10964148

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG137100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACAATTTTGGGACTGCTGCCTCTCTCTTTAATATAATCAGGATCTTGACAATCTCTCACTCTCTTACTCACAGGGATTGGCCTGTTGAAAAACTCAAAGAAGTTAAGGTTGCTGATGCTCTGAAACATCCTAACTGGAGTATGGGAAAGAAGATAACTGTTGATTCAGCTACGCTTTTCAATAAGGGGCTAGAAGTCATTGAAGCCCATTACTTGTATGGAGCTGAGTATGATGATATCGAGATTGTGATTCATCCACAATCCATCATCCATTCGATGATTGAAACTCAGGATTCATCTGTTCTAGCACAGTTGGGTTGGCCTGATATGCGCTTGCCAATCCTCTACACCATGTCATGGCCGGAGAGAATCTATTGCTCTGAAGTAACCTGGCCCCGGCTTGATCTTTGCAAGCTTGGTTCACTAACCTTTAAAGCTCCTGACAACGTGAAATACCCATCCATGGATCTTGCTTATTCTGCTGGACGGGCCGGTGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAAAAGGCTGTGGAGATGTTTATCGATGAAAAAATTAGATATCTGGATATTTTCAAGGTTGTTGAGCTAACATGTGCCAAGCACAGGGCAGAGCTCGTGACCTCACCTTCCCTCGAGGAAATTGTACATTATGATTTATGGGCAAGAGATTACGCTGCTAATCTGCAAAGCTCAACAAGTTCAACCCCTGTATTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

243

Amino Acids

27.37

Weight (kDa)

5.47

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_redisom_C	PF08436	22 - 74	2.3e-22	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
DXPR_C	PF13288	106 - 227	3.1e-37	DXP reductoisomerase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62790 AT5G62790
fragaria_vesca	FvH4_1g09716 FvH4_1g09717 FvH4_3g27741 FvH4_4g01210 FvH4_5g05300 FvH4_5g38682
malus_domestica	MD06G1174000.v1.1 MD14G1180500.v1.1
prunus_persica	Prupe.5G174000_v2.0.a1
pyrus_communis	pycom06g15530 pycom14g15050
rosa_chinensis	RchiOBHm_Chr7g0193571
rosa_laevigata	RLG00000004262
rosa_multiflora	Rmu_ssc0000035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262000
rosa_rugosa	Rorug07G0010200
rosa_samantha	Rh7AG137100 Rh7BG137400 Rh7CG140700 Rh7DG138500
rosa_wichuraiana	Rw7G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	360
AclWI	GGATC	2 cut(s)	53, 477
AcoI	YGGCCR	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	4 cut(s)	360, 399, 466, 615
AflIII	ACRYGT	1 cut(s)	602
AgsI	TTSAA	6 cut(s)	92, 184, 206, 287, 586, 714
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	7 cut(s)	173, 227, 418, 440, 598, 625, 702
AluI	AGCT	7 cut(s)	173, 227, 418, 440, 598, 625, 702
Alw21I	GWGCWC	1 cut(s)	627
AlwI	GGATC	2 cut(s)	53, 477
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	5 cut(s)	83, 323, 362, 395, 492
ApeKI	GCWGC	3 cut(s)	20, 524, 686
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	396, 492
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	627
AvaI	CYCGRG	1 cut(s)	644
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	627
BauI	CACGAG	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	7, 536, 673
BccI	CCATC	2 cut(s)	275, 469
BciT130I	CCWGG	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	400
BfaI	CTAG	2 cut(s)	194, 308
BisI	GCNGC	3 cut(s)	21, 525, 687
BlsI	GCNGC	3 cut(s)	22, 526, 688
Bme1390I	CCNGG	2 cut(s)	394, 400
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	2 cut(s)	396, 492
BmiI	GGNNCC	2 cut(s)	398, 502
BmrFI	CCNGG	2 cut(s)	394, 400
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	400
Bsa29I	ATCGAT	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	398, 465
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 399, 466, 615
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	143
Bse8I	GATNNNNATC	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	394
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	398, 465
BseGI	GGATG	4 cut(s)	130, 256, 270, 461
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	4 cut(s)	360, 399, 466, 615
BseMII	CTCAG	2 cut(s)	219, 305
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	7, 536, 673
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	5 cut(s)	85, 325, 364, 397, 494
BshNI	GGYRCC	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	627
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	3 cut(s)	365, 400, 495
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	4 cut(s)	360, 399, 466, 615
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	5 cut(s)	85, 325, 364, 397, 494
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	3 cut(s)	45, 406, 469
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	5 cut(s)	85, 325, 364, 397, 494
BspCNI	CTCAG	2 cut(s)	220, 304
BspDI	ATCGAT	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	398, 502
BspPI	GGATC	2 cut(s)	53, 477
BspT107I	GGYRCC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	398, 465
BssMI	GATC	3 cut(s)	45, 406, 469
BssSI	CACGAG	1 cut(s)	626
BssT1I	CCWWGG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	626
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	2 cut(s)	163, 315
BstAUI	TGTACA	1 cut(s)	655
BstC8I	GCNNGC	2 cut(s)	338, 416
BstDEI	CTNAG	3 cut(s)	228, 291, 518
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	4 cut(s)	130, 256, 270, 461
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	3 cut(s)	48, 409, 472
BstMBI	GATC	3 cut(s)	45, 406, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 482, 491
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	392, 398
BstV1I	GCAGC	3 cut(s)	7, 536, 673
BstX2I	RGATCY	2 cut(s)	45, 469
BstYI	RGATCY	2 cut(s)	45, 469
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	5 cut(s)	85, 325, 364, 397, 494
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	4 cut(s)	130, 256, 270, 461
Cac8I	GCNNGC	2 cut(s)	338, 416
CfoI	GCGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	2 cut(s)	396, 492
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	656
CviAII	CATG	6 cut(s)	355, 360, 466, 505, 603, 729
CviQI	GTAC	1 cut(s)	656
DdeI	CTNAG	3 cut(s)	228, 291, 518
DpnI	GATC	3 cut(s)	47, 408, 471
DpnII	GATC	3 cut(s)	45, 406, 469
DraI	TTTAAA	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	627
Eco32I	GATATC	2 cut(s)	241, 572
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	392
EcoRV	GATATC	2 cut(s)	241, 572
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	6 cut(s)	358, 363, 469, 508, 606, 732
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	6 cut(s)	354, 359, 465, 504, 602, 728
Fnu4HI	GCNGC	3 cut(s)	21, 525, 687
FokI	GGATG	4 cut(s)	117, 243, 257, 448
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	3 cut(s)	21, 525, 687
FspBI	CTAG	2 cut(s)	194, 308
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	3 cut(s)	21, 525, 687
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	5 cut(s)	85, 325, 364, 397, 494
HapII	CCGG	3 cut(s)	365, 400, 495
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	6 cut(s)	358, 363, 469, 508, 606, 732
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	4 cut(s)	167, 253, 296, 372
HpaII	CCGG	3 cut(s)	365, 400, 495
HphI	GGTGA	1 cut(s)	627
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	2 cut(s)	126, 385
Hpy188III	TCNNGA	7 cut(s)	43, 49, 244, 293, 443, 575, 628
Hpy8I	GTNNAC	1 cut(s)	425
HpyAV	CCTTC	1 cut(s)	648
HpyCH4III	ACNGT	2 cut(s)	163, 315
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	414, 524, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 482, 491
HpyF3I	CTNAG	3 cut(s)	228, 291, 518
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	6 cut(s)	358, 363, 469, 508, 606, 732
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	45, 406, 469
LmnI	GCTCC	2 cut(s)	224, 445
Lsp1109I	GCAGC	3 cut(s)	7, 536, 673
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	194, 308
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	388, 628
MalI	GATC	3 cut(s)	47, 408, 471
MboI	GATC	3 cut(s)	45, 406, 469
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	2 cut(s)	45, 469
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	3 cut(s)	7, 564, 651
MnlI	CCTC	5 cut(s)	34, 356, 640, 643, 653
MseI	TTAA	3 cut(s)	33, 108, 435
MspI	CCGG	3 cut(s)	365, 400, 495
MspR9I	CCNGG	2 cut(s)	394, 400
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	3 cut(s)	331, 482, 491
NciI	CCSGG	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	3 cut(s)	45, 406, 469
NlaIII	CATG	6 cut(s)	358, 363, 469, 508, 606, 732
NlaIV	GGNNCC	2 cut(s)	398, 502
NmuCI	GTSAC	1 cut(s)	628
NspI	RCATGY	1 cut(s)	606
PaeR7I	CTCGAG	1 cut(s)	644
PciI	ACATGT	1 cut(s)	602
PfeI	GAWTC	4 cut(s)	167, 253, 296, 372
PflMI	CCANNNNNTGG	1 cut(s)	360
PkrI	GCNGC	3 cut(s)	22, 526, 688
PscI	ACATGT	1 cut(s)	602
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	398, 502
PspPI	GGNCC	2 cut(s)	396, 492
PspXI	VCTCGAGB	1 cut(s)	644
PsuI	RGATCY	2 cut(s)	45, 469
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	3 cut(s)	33, 108, 435
SatI	GCNGC	3 cut(s)	21, 525, 687
Sau3AI	GATC	3 cut(s)	45, 406, 469
Sau96I	GGNCC	2 cut(s)	396, 492
ScrFI	CCNGG	2 cut(s)	394, 400
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	644
SlaI	CTCGAG	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	3 cut(s)	7, 564, 651
SspMI	CTAG	2 cut(s)	194, 308
SstI	GAGCTC	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	392, 398
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	163, 315
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	243, 278, 555, 645
TasI	AATT	3 cut(s)	7, 564, 651
TatI	WGTACW	1 cut(s)	655
TfiI	GAWTC	4 cut(s)	167, 253, 296, 372
Tru1I	TTAA	3 cut(s)	33, 108, 435
Tru9I	TTAA	3 cut(s)	33, 108, 435
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	3 cut(s)	20, 524, 686
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	4 cut(s)	245, 288, 546, 573
Van91I	CCANNNNNTGG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	644
XspI	CTAG	2 cut(s)	194, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.