Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008471

Physical Location & Seq

Genomic Coordinates Forward (+)

1104439 .. 1107065

Gene Structure 2627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAAAGTATTTTATAGCCCTCTCCAACAGATGTGTTCTCGGGGTTTGGAATCATGACCAAGAAGGGACACGAGCATGGAACGTGGGTGAGTTCTGGAATGCTCCGGAGCGTCTGTGCTCCGCGTTTGTTTGCCTTACGTGTCGATCCTCCATTGGCGCGAGTATTTCGTCCGTGGCTCGGCGGCGAACTGGTGATGGTCTGATTTTTTGGCTGCTTCTTCGGCGAAGCTATTGGGTCGTTTCCACAGATCTTCCATTGTTTGTCTCTTCAGTTGCAGGACTGAGGGAGAGAAAGATAATGTGTTGGTGGGTTTGGAACCCAGGTATGGAGGAGATCCCTTTCTTTCTTTTTAATATCATTGTTGAGATATTGGACATAGTTCCGGATAAGTTCAGAGTTGTGGCCCTAGCAGCTGGCTCAAATGTTACTCTTCTTGTGGATCAGGTGAAGAGGTTCAAACCCAAACTAGTTGCTGTTAGAAATGAATCATTAGTTGATGAGCTTCAAGAGGCTCTATCTGGTTTAGAAGACAAGCCTGAGATCATTCCTGGGGAGCAAGGAGTCATTGAGGTTGCTCGGCACCCAGATGCAGTCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGACTGAGGCCTATAGTGGCTGCAATAGAAGTTGGGAAAGACATCGCTTTAGCCAATAAGGAGACTCTGATTGCTGGAGGCCCATTTGTTCTTCCTCTTGCGCACAAGCATAATGTGAAAATTCTTCCTGCTGATTCAGAACATTCTGCAATTTTTCAGGGGCTAGAAGTCATCGAAGCCCATTACTTGTACGGAGCTGATTATGATGATATCGAGATTGTAATTCATCCACAATCCATCATACATTCGATGATTGAAACACAGGATTCATCTGTTCTAGCACAGTTGGGGTGGCCTGATATGCGCTTGCCAATCCTCTACACCATGCATGGCCGGAGAGAATCTATTGCTCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

329

Amino Acids

36.46

Weight (kDa)

5.75

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	123 - 236	5.1e-34	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62790 AT5G62790
fragaria_vesca	FvH4_1g09716 FvH4_1g09717 FvH4_3g27741 FvH4_4g01210 FvH4_5g05300 FvH4_5g38682
malus_domestica	MD06G1174000.v1.1 MD14G1180500.v1.1
prunus_persica	Prupe.5G174000_v2.0.a1
pyrus_communis	pycom06g15530 pycom14g15050
rosa_chinensis	RchiOBHm_Chr7g0193571
rosa_laevigata	RLG00000004262
rosa_multiflora	Rmu_ssc0000035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262000
rosa_rugosa	Rorug07G0010200
rosa_samantha	Rh7AG137100 Rh7BG137400 Rh7CG140700 Rh7DG138500
rosa_wichuraiana	Rw7G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	729
AccB1I	GGYRCC	1 cut(s)	582
AccII	CGCG	2 cut(s)	125, 161
AccIII	TCCGGA	2 cut(s)	106, 385
AciI	CCGC	2 cut(s)	123, 184
AclWI	GGATC	3 cut(s)	141, 331, 450
AcoI	YGGCCR	1 cut(s)	958
AcsI	RAATTY	1 cut(s)	747
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	818
AfiI	CCNNNNNNNGG	2 cut(s)	180, 328
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	460, 509, 884
AhlI	ACTAGT	1 cut(s)	469
AjnI	CCWGG	2 cut(s)	322, 550
AluBI	AGCT	4 cut(s)	231, 416, 505, 824
AluI	AGCT	4 cut(s)	231, 416, 505, 824
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	2 cut(s)	271, 683
AlwI	GGATC	3 cut(s)	141, 331, 450
Ama87I	CYCGRG	1 cut(s)	41
Aor13HI	TCCGGA	2 cut(s)	106, 385
AoxI	GGCC	5 cut(s)	405, 635, 706, 920, 958
ApeKI	GCWGC	3 cut(s)	214, 413, 647
ApoI	RAATTY	1 cut(s)	747
Asp700I	GAANNNNTTC	1 cut(s)	455
AspLEI	GCGC	3 cut(s)	161, 730, 933
AspS9I	GGNCC	2 cut(s)	406, 707
AsuHPI	GGTGA	3 cut(s)	101, 206, 460
AvaI	CYCGRG	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	582
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	201, 425, 634
BccI	CCATC	2 cut(s)	191, 872
BciT130I	CCWGG	2 cut(s)	324, 552
BcoDI	GTCTC	2 cut(s)	271, 683
BcuI	ACTAGT	1 cut(s)	469
BfaI	CTAG	4 cut(s)	410, 470, 791, 905
BfmI	CTRYAG	1 cut(s)	639
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	4 cut(s)	185, 215, 414, 648
BlsI	GCNGC	4 cut(s)	186, 216, 415, 649
Bme1390I	CCNGG	2 cut(s)	324, 552
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	406, 707
BmiI	GGNNCC	2 cut(s)	320, 584
BmrFI	CCNGG	2 cut(s)	324, 552
BmsI	GCATC	1 cut(s)	580
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	1 cut(s)	723
BsaAI	YACGTR	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	174, 322, 551
BsaWI	WCCGGW	2 cut(s)	106, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 328
Bse1I	ACTGG	1 cut(s)	196
BseAI	TCCGGA	2 cut(s)	106, 385
BseBI	CCWGG	2 cut(s)	324, 552
BseDI	CCNNGG	3 cut(s)	174, 322, 551
BseGI	GGATG	1 cut(s)	853
BseLI	CCNNNNNNNGG	2 cut(s)	180, 328
BseMII	CTCAG	3 cut(s)	275, 531, 623
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	3 cut(s)	201, 425, 634
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	2 cut(s)	125, 161
BshFI	GGCC	5 cut(s)	407, 637, 708, 922, 960
BshNI	GGYRCC	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	107, 386, 961
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	180, 328
BsmAI	GTCTC	2 cut(s)	271, 683
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	5 cut(s)	407, 637, 708, 922, 960
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp13I	TCCGGA	2 cut(s)	106, 385
Bsp143I	GATC	5 cut(s)	146, 250, 336, 442, 543
BspACI	CCGC	2 cut(s)	123, 184
BspANI	GGCC	5 cut(s)	407, 637, 708, 922, 960
BspCNI	CTCAG	3 cut(s)	276, 532, 624
BspEI	TCCGGA	2 cut(s)	106, 385
BspFNI	CGCG	2 cut(s)	125, 161
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	320, 584
BspPI	GGATC	3 cut(s)	141, 331, 450
BspT107I	GGYRCC	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	174, 322, 551
BssMI	GATC	5 cut(s)	146, 250, 336, 442, 543
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	324, 552
Bst4CI	ACNGT	2 cut(s)	601, 912
Bst6I	CTCTTC	3 cut(s)	274, 438, 446
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	418, 935
BstDEI	CTNAG	3 cut(s)	284, 540, 632
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	853
BstFNI	CGCG	2 cut(s)	125, 161
BstHHI	GCGC	3 cut(s)	161, 730, 933
BstKTI	GATC	5 cut(s)	149, 253, 339, 445, 546
BstMAI	GTCTC	2 cut(s)	271, 683
BstMBI	GATC	5 cut(s)	146, 250, 336, 442, 543
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 413, 928
BstNI	CCWGG	2 cut(s)	324, 552
BstSCI	CCNGG	2 cut(s)	322, 550
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	2 cut(s)	125, 161
BstV1I	GCAGC	3 cut(s)	201, 425, 634
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	2 cut(s)	250, 336
BstYI	RGATCY	2 cut(s)	250, 336
BsuRI	GGCC	5 cut(s)	407, 637, 708, 922, 960
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	853
Cac8I	GCNNGC	2 cut(s)	418, 935
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	3 cut(s)	161, 730, 933
Cfr13I	GGNCC	2 cut(s)	406, 707
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	817
CviAII	CATG	4 cut(s)	56, 78, 952, 956
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	3 cut(s)	284, 540, 632
DpnI	GATC	5 cut(s)	148, 252, 338, 444, 545
DpnII	GATC	5 cut(s)	146, 250, 336, 442, 543
EaeI	YGGCCR	1 cut(s)	958
Eam1104I	CTCTTC	3 cut(s)	274, 438, 446
EarI	CTCTTC	3 cut(s)	274, 438, 446
Eco147I	AGGCCT	1 cut(s)	637
Eco32I	GATATC	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	322, 550
EcoRV	GATATC	1 cut(s)	838
EcoT22I	ATGCAT	1 cut(s)	957
FaeI	CATG	4 cut(s)	59, 81, 955, 959
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	4 cut(s)	55, 77, 951, 955
Fnu4HI	GCNGC	4 cut(s)	185, 215, 414, 648
FokI	GGATG	1 cut(s)	840
Fsp4HI	GCNGC	4 cut(s)	185, 215, 414, 648
FspBI	CTAG	4 cut(s)	410, 470, 791, 905
FspI	TGCGCA	1 cut(s)	729
GlaI	GCGC	3 cut(s)	160, 729, 932
GluI	GCNGC	4 cut(s)	185, 215, 414, 648
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	5 cut(s)	407, 637, 708, 922, 960
HapII	CCGG	3 cut(s)	107, 386, 961
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	3 cut(s)	161, 730, 933
Hin1II	CATG	4 cut(s)	59, 81, 955, 959
Hin6I	GCGC	3 cut(s)	159, 728, 931
HinP1I	GCGC	3 cut(s)	159, 728, 931
HinfI	GANTC	7 cut(s)	52, 488, 564, 691, 761, 893, 968
HpaII	CCGG	3 cut(s)	107, 386, 961
HphI	GGTGA	3 cut(s)	101, 206, 460
Hpy188I	TCNGA	5 cut(s)	204, 398, 696, 766, 981
Hpy188III	TCNNGA	6 cut(s)	56, 97, 107, 386, 509, 841
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	601, 912
HpyCH4IV	ACGT	2 cut(s)	84, 140
HpyCH4V	TGCA	6 cut(s)	278, 593, 626, 650, 776, 955
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 413, 928
HpyF3I	CTNAG	3 cut(s)	284, 540, 632
HpySE526I	ACGT	2 cut(s)	84, 140
Hsp92II	CATG	4 cut(s)	59, 81, 955, 959
HspAI	GCGC	3 cut(s)	159, 728, 931
Kpn2I	TCCGGA	2 cut(s)	106, 385
Kzo9I	GATC	5 cut(s)	146, 250, 336, 442, 543
LmnI	GCTCC	6 cut(s)	109, 109, 125, 556, 821, 982
Lsp1109I	GCAGC	3 cut(s)	201, 425, 634
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	4 cut(s)	410, 470, 791, 905
MaeII	ACGT	2 cut(s)	84, 140
MaeIII	GTNAC	3 cut(s)	427, 595, 604
MalI	GATC	5 cut(s)	148, 252, 338, 444, 545
MboI	GATC	5 cut(s)	146, 250, 336, 442, 543
MboII	GAAGA	8 cut(s)	212, 245, 261, 425, 463, 542, 710, 743
MflI	RGATCY	2 cut(s)	250, 336
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	3 cut(s)	747, 777, 849
MlyI	GAGTC	2 cut(s)	573, 685
MmeI	TCCRAC	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	957
MroI	TCCGGA	2 cut(s)	106, 385
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	76, 588
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	3 cut(s)	107, 386, 961
MspR9I	CCNGG	2 cut(s)	324, 552
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	324, 552
MvnI	CGCG	2 cut(s)	125, 161
MwoI	GCNNNNNNNGC	3 cut(s)	223, 413, 928
NdeII	GATC	5 cut(s)	146, 250, 336, 442, 543
NlaIII	CATG	4 cut(s)	59, 81, 955, 959
NlaIV	GGNNCC	2 cut(s)	320, 584
NmeAIII	GCCGAG	2 cut(s)	160, 559
NmuCI	GTSAC	1 cut(s)	595
NsbI	TGCGCA	1 cut(s)	729
NsiI	ATGCAT	1 cut(s)	957
PagI	TCATGA	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	637
PctI	GAATGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	5 cut(s)	52, 488, 761, 893, 968
PkrI	GCNGC	4 cut(s)	186, 216, 415, 649
PleI	GAGTC	2 cut(s)	572, 685
PpsI	GAGTC	2 cut(s)	572, 685
Ppu21I	YACGTR	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	322, 550
PspGI	CCWGG	2 cut(s)	322, 550
PspN4I	GGNNCC	2 cut(s)	320, 584
PspPI	GGNCC	2 cut(s)	406, 707
PsuI	RGATCY	2 cut(s)	250, 336
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
RseI	CAYNNNNRTG	2 cut(s)	76, 588
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	4 cut(s)	185, 215, 414, 648
Sau3AI	GATC	5 cut(s)	146, 250, 336, 442, 543
Sau96I	GGNCC	2 cut(s)	406, 707
SchI	GAGTC	2 cut(s)	573, 685
ScrFI	CCNGG	2 cut(s)	324, 552
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	639
SmiMI	CAYNNNNRTG	2 cut(s)	76, 588
SpeI	ACTAGT	1 cut(s)	469
Sse9I	AATT	3 cut(s)	747, 777, 849
SseBI	AGGCCT	1 cut(s)	637
SsiI	CCGC	2 cut(s)	123, 184
SspMI	CTAG	4 cut(s)	410, 470, 791, 905
StuI	AGGCCT	1 cut(s)	637
StyD4I	CCNGG	2 cut(s)	322, 550
TaaI	ACNGT	2 cut(s)	601, 912
TaiI	ACGT	2 cut(s)	87, 143
TaqI	TCGA	4 cut(s)	145, 801, 840, 875
TasI	AATT	3 cut(s)	747, 777, 849
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	5 cut(s)	52, 488, 761, 893, 968
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	3 cut(s)	214, 413, 647
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	501, 842, 885
TspGWI	ACGGA	2 cut(s)	163, 834
XapI	RAATTY	1 cut(s)	747
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	4 cut(s)	410, 470, 791, 905
Zsp2I	ATGCAT	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.