FvH4_5g05300

1-deoxy-D-xylulose 5-phosphate reductoisomerase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
3095385 .. 3100508
5124 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05300.t1

Sequence Viewer

Length: 1416 bp
ATGGCTCTGAATCTGTTGTCTCCAGCTGAGATTAAAGCTATCTCTTTCTTGGATTCCACCAAGTCCACTCACTTACCAAAGCTTCCAGGTGGGTTTGCTTTGAGGAGGAAAGATTGCGGAACAGTGATTGGAAGGAGAATTCAGTGTTCAGCACAAGCACCACCTCCAGCTTGGCCGGGAAGTGCTTTTCCGGAGCCCGGCCGGAGGACTTGGGATGGTCCAAAGCCTATCTCTATTGTGGGATCTACTGGTTCTATTGGAACCCAGACATTGGACATAGTTGCAGAGAATCCGGATAAGTTCAGAGTTGTGGCCCTAGCAGCTGGCTCAAATGTTACTCTTCTTGTGGATCAGGTGAAGAGGTTCAAACCCAAACTAGTTGCTGTTAGAAATGAATCATTAGTTGATGAGCTTAAAGAGGCTCTATCTGGTTTAGAAGACAAGCCTGAGATCATTCCTGGGGAGCAAGGAGTCATTGAGGTTGCTCGGCACCCAGATGCAGTCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGACTGAGGCCTACAGTGGCGGCAATAGAAGCTGGGAAAGACATAGCTTTAGCCAATAAGGAGACTCTGATTGCTGGAGGCCCATTTGTTCTTCCTCTTGCGCACAAACATAATGTGAAAATTCTTCCTGCTGATTCAGAACATTCTGCAATTTTTCAGTGTATTCAAGGCTTGCCAGAGGGTGCACTTAGGCGTATTATTTTGACAGCTTCTGGTGGGGCTTTCAGGGATTGGCCTGTTGAAAAACTCAAAGAAGTTAAAGTTGCTGATGCTCTGAAACATCCTAACTGGACTATGGGAAAGAAGATAACTGTTGATTCAGCTACTCTTTTCAATAAGGGGCTAGAAGTCATCGAGGCCCATTACTTGTATGGAGCTGATTATGATGATATCGAGATTGTAATTCATCCACAATCCATCATACATTCGATGATTGAAACACAGGATTCATCTGTTCTAGCACAGTTGGGGTGGCCTGATATGCGCTTGCCAATCCTCTACACCATGTCATGGCCGGAGAGAATCTATTGCTCTGAAGTAACCTGGCCCCGGCTTGATCTTTGCAAGCTTGGTTCACTAACCTTTAAAGCTCCTGACAACGTGAAATACCCATCCATGGATCTTGCCTATTCTGCCGGAAGGGCTGGTGGCACTATGACAGGAGTTCTTAGTGCAGCAAATGAAAAGGCTGTGGAGATGTTTATCGATGAAAAAATTAGTTATCTGGACATTTTCAAGGTTGTTGAGCTGACATGTGCTAAGCACAGGGCTGAACTAGTGACCTCACCTTCCCTTGAGGAAATCATACACTATGATTTGTGGGCACGAGATTATGCTGCTAATCTGCAAAACTCTACAAGTTCAACCCCTGTCTTCGCATGA

Protein Analysis

472

Amino Acids

51.14

Weight (kDa)

6.04

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DXP_reductoisom PF02670 77 - 205 8.2e-48 1-deoxy-D-xylulose 5-phosphate reductoisomerase
DXP_redisom_C PF08436 219 - 302 4.2e-38 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
DXPR_C PF13288 334 - 455 1.1e-36 DXP reductoisomerase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 636
AccB1I GGYRCC 1 cut(s) 489
AccB7I CCANNNNNTGG 2 cut(s) 271, 1044
AccIII TCCGGA 2 cut(s) 190, 292
AciI CCGC 2 cut(s) 117, 554
AclWI GGATC 3 cut(s) 250, 357, 1161
AcoI YGGCCR 3 cut(s) 173, 199, 1046
AcsI RAATTY 2 cut(s) 138, 654
AcuI CTGAAG 1 cut(s) 1089
AfiI CCNNNNNNNGG 6 cut(s) 197, 204, 271, 1044, 1083, 1150
AflIII ACRYGT 1 cut(s) 1286
AgsI TTSAA 7 cut(s) 367, 701, 776, 868, 971, 1270, 1398
AhlI ACTAGT 2 cut(s) 376, 1309
AjnI CCWGG 3 cut(s) 85, 457, 1076
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 2 cut(s) 24, 590
Alw44I GTGCAC 1 cut(s) 717
AlwI GGATC 3 cut(s) 250, 357, 1161
AlwNI CAGNNNCTG 1 cut(s) 746
Aor13HI TCCGGA 2 cut(s) 190, 292
ApaLI GTGCAC 1 cut(s) 717
ApeKI GCWGC 3 cut(s) 320, 1208, 1370
ApoI RAATTY 2 cut(s) 138, 654
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 2 cut(s) 637, 1020
AspS9I GGNCC 5 cut(s) 218, 313, 614, 892, 1080
AsuC2I CCSGG 3 cut(s) 177, 198, 1084
AsuHPI GGTGA 2 cut(s) 367, 1311
AvaII GGWCC 1 cut(s) 218
BaeGI GKGCMC 2 cut(s) 721, 1360
BanI GGYRCC 1 cut(s) 489
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 1359
BbsI GAAGAC 2 cut(s) 444, 1399
Bbv12I GWGCWC 1 cut(s) 721
BbvI GCAGC 3 cut(s) 332, 1220, 1357
BccI CCATC 3 cut(s) 209, 959, 1153
BciT130I CCWGG 3 cut(s) 87, 459, 1078
BcnI CCSGG 3 cut(s) 177, 198, 1084
BcoDI GTCTC 2 cut(s) 24, 590
BcuI ACTAGT 2 cut(s) 376, 1309
BfaI CTAG 5 cut(s) 317, 377, 878, 992, 1310
BfmI CTRYAG 1 cut(s) 546
BglI GCCNNNNNGGC 1 cut(s) 1175
BisI GCNGC 4 cut(s) 321, 555, 1209, 1371
BlpI GCTNAGC 1 cut(s) 1293
BlsI GCNGC 4 cut(s) 322, 556, 1210, 1372
Bme1390I CCNGG 6 cut(s) 87, 177, 198, 459, 1078, 1084
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 5 cut(s) 218, 313, 614, 892, 1080
BmiI GGNNCC 4 cut(s) 195, 262, 491, 1082
BmrFI CCNGG 6 cut(s) 87, 177, 198, 459, 1078, 1084
BmsI GCATC 2 cut(s) 487, 793
BpiI GAAGAC 2 cut(s) 444, 1399
BpmI CTGGAG 3 cut(s) 6, 150, 630
Bpu1102I GCTNAGC 1 cut(s) 1293
BpuEI CTTGAG 1 cut(s) 1349
BpuMI CCSGG 3 cut(s) 177, 198, 1084
Bsa29I ATCGAT 1 cut(s) 1239
BsaBI GATNNNNATC 1 cut(s) 1235
BsaJI CCNNGG 3 cut(s) 458, 1082, 1149
BsaWI WCCGGW 2 cut(s) 190, 292
Bsc4I CCNNNNNNNGG 6 cut(s) 197, 204, 271, 1044, 1083, 1150
Bse1I ACTGG 2 cut(s) 253, 827
Bse8I GATNNNNATC 1 cut(s) 1235
BseAI TCCGGA 2 cut(s) 190, 292
BseBI CCWGG 3 cut(s) 87, 459, 1078
BseCI ATCGAT 1 cut(s) 1239
BseDI CCNNGG 3 cut(s) 458, 1082, 1149
BseGI GGATG 4 cut(s) 220, 814, 940, 1145
BseJI GATNNNNATC 1 cut(s) 1235
BseLI CCNNNNNNNGG 6 cut(s) 197, 204, 271, 1044, 1083, 1150
BseMII CTCAG 3 cut(s) 18, 438, 530
BseNI ACTGG 2 cut(s) 253, 827
BseRI GAGGAG 1 cut(s) 118
BseSI GKGCMC 2 cut(s) 721, 1360
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 3 cut(s) 332, 1220, 1357
BseYI CCCAGC 1 cut(s) 566
BsgI GTGCAG 2 cut(s) 552, 1227
Bsh1285I CGRYCG 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 489
BshVI ATCGAT 1 cut(s) 1239
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 721
BsiSI CCGG 8 cut(s) 176, 191, 198, 202, 293, 1049, 1084, 1170
BslI CCNNNNNNNGG 6 cut(s) 197, 204, 271, 1044, 1083, 1150
BsmAI GTCTC 2 cut(s) 24, 590
Bsp1286I GDGCHC 3 cut(s) 198, 721, 1360
Bsp13I TCCGGA 2 cut(s) 190, 292
Bsp143I GATC 5 cut(s) 242, 349, 450, 1090, 1153
Bsp1720I GCTNAGC 1 cut(s) 1293
Bsp19I CCATGG 1 cut(s) 1149
BspACI CCGC 2 cut(s) 117, 554
BspCNI CTCAG 3 cut(s) 19, 439, 531
BspDI ATCGAT 1 cut(s) 1239
BspEI TCCGGA 2 cut(s) 190, 292
BspLI GGNNCC 4 cut(s) 195, 262, 491, 1082
BspPI GGATC 3 cut(s) 250, 357, 1161
BspT107I GGYRCC 1 cut(s) 489
BsrI ACTGG 2 cut(s) 253, 827
BssECI CCNNGG 3 cut(s) 458, 1082, 1149
BssMI GATC 5 cut(s) 242, 349, 450, 1090, 1153
BssSI CACGAG 1 cut(s) 1359
BssT1I CCWWGG 1 cut(s) 1149
Bst2BI CACGAG 1 cut(s) 1359
Bst2UI CCWGG 3 cut(s) 87, 459, 1078
Bst4CI ACNGT 5 cut(s) 124, 508, 550, 847, 999
Bst6I CTCTTC 2 cut(s) 345, 353
BstC8I GCNNGC 4 cut(s) 325, 707, 1022, 1100
BstDEI CTNAG 6 cut(s) 27, 447, 539, 722, 1202, 1293
BstDSI CCRYGG 1 cut(s) 1149
BstF5I GGATG 4 cut(s) 220, 814, 940, 1145
BstHHI GCGC 2 cut(s) 637, 1020
BstKTI GATC 5 cut(s) 245, 352, 453, 1093, 1156
BstMAI GTCTC 2 cut(s) 24, 590
BstMBI GATC 5 cut(s) 242, 349, 450, 1090, 1153
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 5 cut(s) 320, 563, 1015, 1166, 1175
BstNI CCWGG 3 cut(s) 87, 459, 1078
BstNSI RCATGY 1 cut(s) 1290
BstSCI CCNGG 6 cut(s) 85, 175, 196, 457, 1076, 1082
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 2 cut(s) 721, 1360
BstV1I GCAGC 3 cut(s) 332, 1220, 1357
BstV2I GAAGAC 2 cut(s) 444, 1399
BstX2I RGATCY 2 cut(s) 242, 1153
BstYI RGATCY 2 cut(s) 242, 1153
BstZI CGGCCG 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 1239
BsuTUI ATCGAT 1 cut(s) 1239
BtgI CCRYGG 1 cut(s) 1149
BtsCI GGATG 4 cut(s) 220, 814, 940, 1145
BtsIMutI CAGTG 4 cut(s) 129, 149, 555, 698
Cac8I GCNNGC 4 cut(s) 325, 707, 1022, 1100
CaiI CAGNNNCTG 1 cut(s) 746
CfoI GCGC 2 cut(s) 637, 1020
Cfr13I GGNCC 5 cut(s) 218, 313, 614, 892, 1080
ClaI ATCGAT 1 cut(s) 1239
CviAII CATG 5 cut(s) 1039, 1044, 1150, 1287, 1413
DdeI CTNAG 6 cut(s) 27, 447, 539, 722, 1202, 1293
DpnI GATC 5 cut(s) 244, 351, 452, 1092, 1155
DpnII GATC 5 cut(s) 242, 349, 450, 1090, 1153
DraI TTTAAA 1 cut(s) 1120
EaeI YGGCCR 3 cut(s) 173, 199, 1046
EagI CGGCCG 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 345, 353
EarI CTCTTC 2 cut(s) 345, 353
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 1149
Eco147I AGGCCT 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 198
Eco32I GATATC 1 cut(s) 925
Eco47I GGWCC 1 cut(s) 218
Eco52I CGGCCG 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 1089
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 85, 457, 1076
EcoRV GATATC 1 cut(s) 925
EcoT14I CCWWGG 1 cut(s) 1149
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 1149
FaeI CATG 5 cut(s) 1042, 1047, 1153, 1290, 1416
FatI CATG 5 cut(s) 1038, 1043, 1149, 1286, 1412
Fnu4HI GCNGC 4 cut(s) 321, 555, 1209, 1371
FokI GGATG 4 cut(s) 227, 801, 927, 1132
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 4 cut(s) 321, 555, 1209, 1371
FspBI CTAG 5 cut(s) 317, 377, 878, 992, 1310
FspI TGCGCA 1 cut(s) 636
GlaI GCGC 2 cut(s) 636, 1019
GluI GCNGC 4 cut(s) 321, 555, 1209, 1371
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 3 cut(s) 6, 150, 630
HapII CCGG 8 cut(s) 176, 191, 198, 202, 293, 1049, 1084, 1170
HhaI GCGC 2 cut(s) 637, 1020
Hin1II CATG 5 cut(s) 1042, 1047, 1153, 1290, 1416
Hin6I GCGC 2 cut(s) 635, 1018
HinP1I GCGC 2 cut(s) 635, 1018
HindIII AAGCTT 2 cut(s) 80, 1100
HpaII CCGG 8 cut(s) 176, 191, 198, 202, 293, 1049, 1084, 1170
HphI GGTGA 2 cut(s) 367, 1311
Hpy166II GTNNAC 3 cut(s) 66, 719, 1109
Hpy188I TCNGA 6 cut(s) 9, 305, 603, 673, 810, 1069
Hpy188III TCNNGA 5 cut(s) 191, 293, 928, 1127, 1259
Hpy8I GTNNAC 3 cut(s) 66, 719, 1109
HpyAV CCTTC 3 cut(s) 126, 1167, 1332
HpyCH4III ACNGT 5 cut(s) 124, 508, 550, 847, 999
HpyCH4IV ACGT 1 cut(s) 1134
HpyCH4V TGCA 8 cut(s) 284, 500, 533, 683, 719, 1098, 1208, 1381
HpyF10VI GCNNNNNNNGC 5 cut(s) 320, 563, 1015, 1166, 1175
HpyF3I CTNAG 6 cut(s) 27, 447, 539, 722, 1202, 1293
HpySE526I ACGT 1 cut(s) 1134
Hsp92II CATG 5 cut(s) 1042, 1047, 1153, 1290, 1416
HspAI GCGC 2 cut(s) 635, 1018
Kpn2I TCCGGA 2 cut(s) 190, 292
Kzo9I GATC 5 cut(s) 242, 349, 450, 1090, 1153
LmnI GCTCC 4 cut(s) 193, 463, 908, 1129
Lsp1109I GCAGC 3 cut(s) 332, 1220, 1357
LweI GCATC 2 cut(s) 487, 793
MaeI CTAG 5 cut(s) 317, 377, 878, 992, 1310
MaeII ACGT 1 cut(s) 1134
MaeIII GTNAC 5 cut(s) 334, 502, 511, 1072, 1312
MalI GATC 5 cut(s) 244, 351, 452, 1092, 1155
MboI GATC 5 cut(s) 242, 349, 450, 1090, 1153
MboII GAAGA 7 cut(s) 332, 370, 449, 617, 650, 850, 1399
MflI RGATCY 2 cut(s) 242, 1153
MhlI GDGCHC 3 cut(s) 198, 721, 1360
MluCI AATT 5 cut(s) 138, 654, 684, 936, 1248
MlyI GAGTC 2 cut(s) 480, 592
MroI TCCGGA 2 cut(s) 190, 292
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 4 cut(s) 33, 414, 792, 1119
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 2 cut(s) 26, 323
MspI CCGG 8 cut(s) 176, 191, 198, 202, 293, 1049, 1084, 1170
MspR9I CCNGG 6 cut(s) 87, 177, 198, 459, 1078, 1084
MvaI CCWGG 3 cut(s) 87, 459, 1078
MwoI GCNNNNNNNGC 5 cut(s) 320, 563, 1015, 1166, 1175
NciI CCSGG 3 cut(s) 177, 198, 1084
NcoI CCATGG 1 cut(s) 1149
NdeII GATC 5 cut(s) 242, 349, 450, 1090, 1153
NlaIII CATG 5 cut(s) 1042, 1047, 1153, 1290, 1416
NlaIV GGNNCC 4 cut(s) 195, 262, 491, 1082
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 2 cut(s) 502, 1312
NsbI TGCGCA 1 cut(s) 636
NspI RCATGY 1 cut(s) 1290
PceI AGGCCT 1 cut(s) 544
PciI ACATGT 1 cut(s) 1286
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 8 cut(s) 10, 53, 289, 395, 668, 851, 980, 1056
PflMI CCANNNNNTGG 2 cut(s) 271, 1044
PkrI GCNGC 4 cut(s) 322, 556, 1210, 1372
PleI GAGTC 2 cut(s) 479, 592
PpsI GAGTC 2 cut(s) 479, 592
PscI ACATGT 1 cut(s) 1286
Psp6I CCWGG 3 cut(s) 85, 457, 1076
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 3 cut(s) 85, 457, 1076
PspN4I GGNNCC 4 cut(s) 195, 262, 491, 1082
PspPI GGNCC 5 cut(s) 218, 313, 614, 892, 1080
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 2 cut(s) 242, 1153
PvuII CAGCTG 2 cut(s) 26, 323
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 4 cut(s) 33, 414, 792, 1119
SatI GCNGC 4 cut(s) 321, 555, 1209, 1371
Sau3AI GATC 5 cut(s) 242, 349, 450, 1090, 1153
Sau96I GGNCC 5 cut(s) 218, 313, 614, 892, 1080
SchI GAGTC 2 cut(s) 480, 592
ScrFI CCNGG 6 cut(s) 87, 177, 198, 459, 1078, 1084
SduI GDGCHC 3 cut(s) 198, 721, 1360
SfaNI GCATC 2 cut(s) 487, 793
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 1328
SmoI CTYRAG 1 cut(s) 1328
SpeI ACTAGT 2 cut(s) 376, 1309
Sse9I AATT 5 cut(s) 138, 654, 684, 936, 1248
SseBI AGGCCT 1 cut(s) 544
SsiI CCGC 2 cut(s) 117, 554
SspMI CTAG 5 cut(s) 317, 377, 878, 992, 1310
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 6 cut(s) 85, 175, 196, 457, 1076, 1082
StyI CCWWGG 1 cut(s) 1149
TaaI ACNGT 5 cut(s) 124, 508, 550, 847, 999
TaiI ACGT 1 cut(s) 1137
TaqI TCGA 4 cut(s) 888, 927, 962, 1239
TasI AATT 5 cut(s) 138, 654, 684, 936, 1248
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 8 cut(s) 10, 53, 289, 395, 668, 851, 980, 1056
Tru1I TTAA 4 cut(s) 33, 414, 792, 1119
Tru9I TTAA 4 cut(s) 33, 414, 792, 1119
TscAI CASTG 4 cut(s) 129, 149, 555, 698
TseFI GTSAC 2 cut(s) 502, 1312
TseI GCWGC 3 cut(s) 320, 1208, 1370
Tsp45I GTSAC 2 cut(s) 502, 1312
TspDTI ATGAA 5 cut(s) 408, 929, 972, 1230, 1257
TspRI CASTG 4 cut(s) 129, 149, 555, 698
Van91I CCANNNNNTGG 2 cut(s) 271, 1044
VneI GTGCAC 1 cut(s) 717
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 2 cut(s) 138, 654
XceI RCATGY 1 cut(s) 1290
XcmI CCANNNNNNNNNTGG 2 cut(s) 168, 902
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 5 cut(s) 317, 377, 878, 992, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.