Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008471

Physical Location & Seq

Genomic Coordinates Forward (+)

839331 .. 841164

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0010200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGCATCTCTCTATCCAGAAATATAGCAAGTTTCATTTTCTCCTCTCCCCTCTTCTCCAAGAAAAATGGTGGTATTCCCATTCCCATGCAATTAGAGAACATGGTCTCCTTGGTTTCCCGGACCGGAAGGCATTTGCAGCGCTACGATAAAGGCTGCCGCCAAGTTGTAGGATGCATACCCTACAGATATAGGCAAACAAAACAAGAATCTTTATCTACGGAGGAAATAGAAGTTCTTGTGATTAGTTCACAAAAGGGTCAAGGAGTGTTGTTCCCAAAGGGAGGTTGGGAACTTGATGAGTCTATTGAAGAAGCGGCTTACAGAGAAACGCTAGAGGAGGCTGGTGTGACTGGCCATCTTGAGCCTAAATTGGGCAAATGGCGTTACAAGAGCAAAAGCCAGGGCACTTTTCATGAGGGGTACATGTTCCCTTTGCTTGTCAACAAGCAGTTCGAGTCTTGGCCTGAGAAGACTGTCAGGAAACGAGAATGGATGACTCTTGTTGAAGCTAAAGAAGCATGCCAAAATTGGTGGATGAAGGAAGCTTTGGATGAATTTGTTCGTCGACAAACGCAGCACCAAAAGAAAGAAGAACAAGATGAGCCTGTTTGTACTTTGTACATAACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

211

Amino Acids

24.54

Weight (kDa)

7.66

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	78 - 186	4.3e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62790 AT5G62790
fragaria_vesca	FvH4_1g09716 FvH4_1g09717 FvH4_3g27741 FvH4_4g01210 FvH4_5g05300 FvH4_5g38682
malus_domestica	MD06G1174000.v1.1 MD14G1180500.v1.1
prunus_persica	Prupe.5G174000_v2.0.a1
pyrus_communis	pycom06g15530 pycom14g15050
rosa_chinensis	RchiOBHm_Chr7g0193571
rosa_laevigata	RLG00000004262
rosa_multiflora	Rmu_ssc0000035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262000
rosa_rugosa	Rorug07G0010200
rosa_samantha	Rh7AG137100 Rh7BG137400 Rh7CG140700 Rh7DG138500
rosa_wichuraiana	Rw7G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	568
AciI	CCGC	2 cut(s)	160, 317
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	557
AfaI	GTAC	3 cut(s)	425, 616, 623
AfeI	AGCGCT	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	284, 374
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	311, 509
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	2 cut(s)	512, 548
AluI	AGCT	2 cut(s)	512, 548
Alw26I	GTCTC	1 cut(s)	112
Aor51HI	AGCGCT	1 cut(s)	143
AoxI	GGCC	2 cut(s)	355, 464
ApeKI	GCWGC	3 cut(s)	139, 156, 577
ApoI	RAATTY	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	3 cut(s)	143, 151, 589
BccI	CCATC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	184
BfoI	RGCGCY	1 cut(s)	145
BisI	GCNGC	5 cut(s)	140, 157, 160, 318, 578
BlsI	GCNGC	5 cut(s)	141, 158, 161, 319, 579
Bme1390I	CCNGG	2 cut(s)	121, 404
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	121, 404
BmsI	GCATC	2 cut(s)	15, 164
BpiI	GAAGAC	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	111, 403
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 374
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	111, 403
BseGI	GGATG	4 cut(s)	179, 501, 543, 559
BseLI	CCNNNNNNNGG	2 cut(s)	284, 374
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	2 cut(s)	34, 353
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	3 cut(s)	143, 151, 589
BshFI	GGCC	2 cut(s)	357, 466
BsiSI	CCGG	2 cut(s)	121, 126
BslI	CCNNNNNNNGG	2 cut(s)	284, 374
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	357, 466
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp1407I	TGTACA	1 cut(s)	621
BspACI	CCGC	2 cut(s)	160, 317
BspANI	GGCC	2 cut(s)	357, 466
BspCNI	CTCAG	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	415
BspTNI	GGTCTC	1 cut(s)	112
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	111, 403
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	621
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	4 cut(s)	179, 501, 543, 559
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 518
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	430, 525
BstSCI	CCNGG	2 cut(s)	119, 402
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	3 cut(s)	143, 151, 589
BstV2I	GAAGAC	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	357, 466
BtsCI	GGATG	4 cut(s)	179, 501, 543, 559
Cac8I	GCNNGC	1 cut(s)	523
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	123
CpoI	CGGWCCG	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	424, 615, 622
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CspI	CGGWCCG	1 cut(s)	123
CviAII	CATG	5 cut(s)	88, 103, 416, 427, 522
CviQI	GTAC	3 cut(s)	424, 615, 622
DdeI	CTNAG	1 cut(s)	468
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	123
Eco47III	AGCGCT	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	5 cut(s)	91, 106, 419, 430, 525
FaiI	YATR	9 cut(s)	26, 89, 104, 179, 192, 417, 428, 523, 626
FatI	CATG	5 cut(s)	87, 102, 415, 426, 521
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	5 cut(s)	140, 157, 160, 318, 578
FokI	GGATG	4 cut(s)	186, 508, 550, 566
Fsp4HI	GCNGC	5 cut(s)	140, 157, 160, 318, 578
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	5 cut(s)	140, 157, 160, 318, 578
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	357, 466
HapII	CCGG	2 cut(s)	121, 126
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	5 cut(s)	91, 106, 419, 430, 525
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	2 cut(s)	445, 569
HindII	GTYRAC	2 cut(s)	445, 569
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	4 cut(s)	209, 302, 458, 499
HpaII	CCGG	2 cut(s)	121, 126
Hpy166II	GTNNAC	3 cut(s)	251, 445, 569
Hpy188III	TCNNGA	4 cut(s)	18, 362, 416, 481
Hpy8I	GTNNAC	3 cut(s)	251, 445, 569
Hpy99I	CGWCG	1 cut(s)	570
HpyAV	CCTTC	2 cut(s)	123, 535
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	3 cut(s)	91, 139, 177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 518
HpyF3I	CTNAG	1 cut(s)	468
Hsp92II	CATG	5 cut(s)	91, 106, 419, 430, 525
HspAI	GCGC	1 cut(s)	142
Lsp1109I	GCAGC	3 cut(s)	143, 151, 589
LweI	GCATC	2 cut(s)	15, 164
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	349, 386
MboII	GAAGA	4 cut(s)	46, 323, 484, 605
MhlI	GDGCHC	1 cut(s)	410
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	4 cut(s)	92, 371, 529, 557
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	3 cut(s)	311, 467, 493
MnlI	CCTC	7 cut(s)	55, 62, 217, 278, 331, 334, 412
Mox20I	TGGCCA	1 cut(s)	357
Mph1103I	ATGCAT	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	357
MspI	CCGG	2 cut(s)	121, 126
MspR9I	CCNGG	2 cut(s)	121, 404
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	139, 518
NciI	CCSGG	1 cut(s)	121
NlaIII	CATG	5 cut(s)	91, 106, 419, 430, 525
NmuCI	GTSAC	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	2 cut(s)	430, 525
PaeI	GCATGC	1 cut(s)	525
PagI	TCATGA	1 cut(s)	415
PciI	ACATGT	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	5 cut(s)	141, 158, 161, 319, 579
PleI	GAGTC	3 cut(s)	310, 466, 493
PpsI	GAGTC	3 cut(s)	310, 466, 493
PscI	ACATGT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	123
RsaI	GTAC	3 cut(s)	425, 616, 623
RsaNI	GTAC	3 cut(s)	424, 615, 622
RseI	CAYNNNNRTG	1 cut(s)	86
Rsr2I	CGGWCCG	1 cut(s)	123
RsrII	CGGWCCG	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	567
SatI	GCNGC	5 cut(s)	140, 157, 160, 318, 578
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	3 cut(s)	311, 467, 493
ScrFI	CCNGG	2 cut(s)	121, 404
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	3 cut(s)	289, 514, 550
SfaNI	GCATC	2 cut(s)	15, 164
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	525
Sse9I	AATT	4 cut(s)	92, 371, 529, 557
SsiI	CCGC	2 cut(s)	160, 317
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	119, 402
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	456, 568
TasI	AATT	4 cut(s)	92, 371, 529, 557
TatI	WGTACW	2 cut(s)	614, 621
TauI	GCSGC	2 cut(s)	162, 320
TfiI	GAWTC	1 cut(s)	209
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	139, 156, 577
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	25, 404, 554, 570
TspGWI	ACGGA	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	2 cut(s)	430, 525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.