Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008471

Physical Location & Seq

Genomic Coordinates Forward (+)

28611728 .. 28612138

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38682.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGAACGGTGTATCTCCCTCTCCTTGATCTGATCGGCTTGCTTAAGAGCGGCCGTTTTGATCTCGTCGGCTATCTTGGAGGGCTCGGCGGCGAACTCGAGGGATCGGTTGAGATTTTGGCGGAGGTGGTGAACTGGGGATGGTCTGATTTCTTGGCTGCTTCTTCGGCGAAGCTATTGGGTCGTTTCCACAGATCTTCCATTGTTTGTCTCTTCAGTTGCAGGACTGAGGGAGAAAAAGATAATGTGTTGGTGGGTTTGGTAGTGGTGGGTTTGTGCTTTGTGTTGGTGGTGGTTGTTATTTCCTTCTCTCCTTTTTTGTCTGCTTGGAATCAAAATCTAGAGATGGAAAGGACTCCATGTTGTGACAAGAATGGGTTGAAGAGAGGTACGTCCATGGACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.7

Weight (kDa)

5.34

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62790 AT5G62790
fragaria_vesca	FvH4_1g09716 FvH4_1g09717 FvH4_3g27741 FvH4_4g01210 FvH4_5g05300 FvH4_5g38682
malus_domestica	MD06G1174000.v1.1 MD14G1180500.v1.1
prunus_persica	Prupe.5G174000_v2.0.a1
pyrus_communis	pycom06g15530 pycom14g15050
rosa_chinensis	RchiOBHm_Chr7g0193571
rosa_laevigata	RLG00000004262
rosa_multiflora	Rmu_ssc0000035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262000
rosa_rugosa	Rorug07G0010200
rosa_samantha	Rh7AG137100 Rh7BG137400 Rh7CG140700 Rh7DG138500
rosa_wichuraiana	Rw7G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	51
AciI	CCGC	3 cut(s)	51, 90, 122
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	391
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	382
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	135, 340
BceAI	ACGGC	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	341
BfrI	CTTAAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	3 cut(s)	52, 91, 159
BlsI	GCNGC	3 cut(s)	53, 92, 160
BmeT110I	CYCGRG	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	145
BmuI	ACTGGG	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	140
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	5 cut(s)	28, 33, 61, 104, 194
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	3 cut(s)	51, 90, 122
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	112
BspTI	CTTAAG	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	5 cut(s)	28, 33, 61, 104, 194
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	218, 377
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	146
BstKTI	GATC	5 cut(s)	31, 36, 64, 107, 197
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	5 cut(s)	28, 33, 61, 104, 194
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	2 cut(s)	360, 397
CviJI	RGCY	6 cut(s)	39, 54, 72, 85, 158, 175
CviKI_1	RGCY	6 cut(s)	39, 54, 72, 85, 158, 175
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	5 cut(s)	30, 35, 63, 106, 196
DpnII	GATC	5 cut(s)	28, 33, 61, 104, 194
EaeI	YGGCCR	1 cut(s)	52
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	218, 377
EarI	CTCTTC	2 cut(s)	218, 377
EciI	GGCGGA	1 cut(s)	137
EclXI	CGGCCG	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	87
Eco52I	CGGCCG	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	363, 400
FaiI	YATR	2 cut(s)	361, 398
FatI	CATG	2 cut(s)	359, 396
Fnu4HI	GCNGC	3 cut(s)	52, 91, 159
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	52, 91, 159
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	3 cut(s)	52, 91, 159
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	363, 400
HinfI	GANTC	3 cut(s)	331, 355, 401
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	33, 148
Hpy188III	TCNNGA	2 cut(s)	341, 405
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	392
Hsp92II	CATG	2 cut(s)	363, 400
Kzo9I	GATC	5 cut(s)	28, 33, 61, 104, 194
LpnPI	CCDG	2 cut(s)	121, 208
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	5 cut(s)	30, 35, 63, 106, 196
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	5 cut(s)	28, 33, 61, 104, 194
MboII	GAAGA	4 cut(s)	156, 189, 205, 394
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	349, 395
MnlI	CCTC	6 cut(s)	30, 74, 94, 118, 223, 380
MseI	TTAA	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	5 cut(s)	28, 33, 61, 104, 194
NlaIII	CATG	2 cut(s)	363, 400
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	53, 92, 160
PleI	GAGTC	2 cut(s)	349, 395
PpsI	GAGTC	2 cut(s)	349, 395
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	3 cut(s)	52, 91, 159
Sau3AI	GATC	5 cut(s)	28, 33, 61, 104, 194
SchI	GAGTC	2 cut(s)	349, 395
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	4 cut(s)	129, 177, 391, 395
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	44, 98
SmoI	CTYRAG	2 cut(s)	44, 98
SsiI	CCGC	3 cut(s)	51, 90, 122
SspMI	CTAG	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	99
TauI	GCSGC	2 cut(s)	54, 93
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	365
Vha464I	CTTAAG	1 cut(s)	44
XbaI	TCTAGA	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.