FvH4_1g10920

Thiol-disulfide oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010979
Physical Location & Seq
Reverse (-)
5951154 .. 5954238
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10920.t1

Sequence Viewer

Length: 1104 bp
ATGGCAACATTGGCGCTCCTGAGCGTAACATCTCCTTCGCTCTCCTCCCCCAGATCTCTTCCTCTCTCAACTCCCACCAGACTCGGCGTCCTTACTCCAACTTCGCGTTGGGCTCGGAGAACTGTCCACCTTCCCGTCATATGCTCCGCTTCGGAGCCCAATCAAAACGCCGAATCCGAACCGGAAACGACGTCGTCTTCCAGTGACTTGACCTACAAACTATGCGCCGGGATCGGAGGCATTGGGTTCCTCGAAACGACCTACTTGACCTTCCTCAAGCTCACGAATTCCGACGCCTTCTGCCCCACCGGCGGCGGCGGAAGCTGCGGCGATATCCTCAACAGTGAATACGCCGTCGTTTTTGGGGTACCTCTTCCGTTGTTTGGAATGATTGCGTATGGATTAGTTGCTACACTTGGTGTGCAGCTATTGGCTGCAAAGAGTTTACCTTTTGGAATTGGGAAATCTGATGCTAGCTTGGTTTTACTTGGGATTACTACCTCCATGGCAGCTGCCAGTGCTTGTTTCTTGTACATTCTTAGCACGCAGTTTTCGGGAACTTCGTGCTCGTATTGTTTGTTATCGGCATTTCTCTCTTTCAGCTTGTTTTTCATCACTTTGAAGGATTTTGGATTCGAGAAAGTACAGAAAGAGGCGGGTTTATTGGTGTGTTTAGCTGTCTTGGTGGCTGTGACTCTGAACAGGTCATATAGTGCACCTGTTTCCTCAAGCCCGGCTGACGTTGATCTTCCATACGTTGCAACTGAAATAACAACACCATCAACTCCATCTGCTATATCTCTTGCAAAGCATCTAAATGCTATAGGTGCTAAAATGTATGGCGCTTTCTGGTGTTCACATTGTTTAGAACAAAAACAGATGTTTGGACGTGAAGCAGCGAAGGAATTGAACTATGTTGAGTGCTTCCCTGGTGGATATAGAAAGGGAACTATAATGGCAAAGGAATGTATTGATGCCAAACTTGAAGGTTTTCCTACTTGGGTGATCAATGGACAGGTTGTGAGTGGAGAGAAAGATTTGTTAGAGCTTGCAGAGGCATCTGGGTTTGAGATGAAAGAATTTAGTCCGACCCTCATAGAGTAA

Protein Analysis

368

Amino Acids

38.89

Weight (kDa)

5.27

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VKOR PF07884 74 - 206 1.1e-25 Vitamin K epoxide reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35760 AT4G35760
fragaria_vesca FvH4_1g10920 FvH4_1g10920
malus_domestica MD02G1122300.v1.1 MD15G1236200.v1.1
prunus_persica Prupe.7G176300_v2.0.a1
pyrus_communis pycom02g09520 pycom15g21020
rosa_chinensis RchiOBHm_Chr2g0098181
rosa_laevigata RLG00000016769
rosa_multiflora Rmu_sc0009178.1_g000009 Rmu_sc0023861.1_g000003
rosa_roxburghii Rroxscaffold_2G00144220
rosa_rugosa Rorug02G0070800
rosa_samantha Rh2AG118100 Rh2BG121100 Rh2CG122700 Rh2DG122600
rosa_wichuraiana Rw2G009240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 194
Acc65I GGTACC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 367
AccII CGCG 1 cut(s) 106
AciI CCGC 6 cut(s) 147, 312, 315, 318, 327, 656
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 2 cut(s) 286, 1079
AcyI GRCGYC 3 cut(s) 87, 191, 294
AdeI CACNNNGTG 1 cut(s) 419
AfaI GTAC 3 cut(s) 369, 533, 645
AfiI CCNNNNNNNGG 2 cut(s) 311, 383
AgsI TTSAA 3 cut(s) 622, 910, 986
AhdI GACNNNNNGTC 1 cut(s) 86
AjiI CACGTC 1 cut(s) 890
AjnI CCWGG 1 cut(s) 928
AluBI AGCT 8 cut(s) 280, 324, 427, 477, 512, 603, 677, 1048
AluI AGCT 8 cut(s) 280, 324, 427, 477, 512, 603, 677, 1048
Alw21I GWGCWC 2 cut(s) 569, 718
Alw44I GTGCAC 1 cut(s) 714
AlwI GGATC 1 cut(s) 239
ApaLI GTGCAC 1 cut(s) 714
ApeKI GCWGC 6 cut(s) 324, 424, 434, 509, 512, 896
ApoI RAATTY 2 cut(s) 286, 1079
Asp700I GAANNNNTTC 1 cut(s) 990
Asp718I GGTACC 1 cut(s) 367
AspLEI GCGC 3 cut(s) 16, 227, 845
AsuC2I CCSGG 2 cut(s) 229, 734
AsuHPI GGTGA 1 cut(s) 1015
AsuNHI GCTAGC 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 115, 159
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 569, 718
BbvI GCAGC 6 cut(s) 311, 421, 436, 499, 521, 908
BccI CCATC 2 cut(s) 787, 796
BceAI ACGGC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 930
BclI TGATCA 1 cut(s) 1005
BcnI CCSGG 2 cut(s) 229, 734
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 822
BfoI RGCGCY 2 cut(s) 17, 846
BglI GCCNNNNNGGC 1 cut(s) 309
BglII AGATCT 1 cut(s) 53
BisI GCNGC 9 cut(s) 313, 316, 325, 328, 425, 435, 510, 513, 897
BlsI GCNGC 9 cut(s) 314, 317, 326, 329, 426, 436, 511, 514, 898
Bme1390I CCNGG 3 cut(s) 229, 734, 930
BmeRI GACNNNNNGTC 1 cut(s) 86
BmgBI CACGTC 1 cut(s) 890
BmiI GGNNCC 3 cut(s) 156, 248, 369
BmrFI CCNGG 3 cut(s) 229, 734, 930
BmsI GCATC 4 cut(s) 460, 820, 964, 1067
BmtI GCTAGC 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 260, 712
BpuMI CCSGG 2 cut(s) 229, 734
BsaHI GRCGYC 3 cut(s) 87, 191, 294
BsaJI CCNNGG 2 cut(s) 504, 928
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 383
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 2 cut(s) 201, 516
BseBI CCWGG 1 cut(s) 930
BseDI CCNNGG 2 cut(s) 504, 928
BseLI CCNNNNNNNGG 2 cut(s) 311, 383
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 201, 516
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 1 cut(s) 718
BseXI GCAGC 6 cut(s) 311, 421, 436, 499, 521, 908
BsgI GTGCAG 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 367
BsiHKAI GWGCWC 2 cut(s) 569, 718
BsiSI CCGG 4 cut(s) 182, 228, 309, 734
BslI CCNNNNNNNGG 2 cut(s) 311, 383
Bsp1286I GDGCHC 4 cut(s) 115, 159, 569, 718
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 4 cut(s) 53, 231, 745, 1005
Bsp19I CCATGG 1 cut(s) 504
BspACI CCGC 6 cut(s) 147, 312, 315, 318, 327, 656
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 156, 248, 369
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 308
BsrGI TGTACA 1 cut(s) 531
BsrI ACTGG 2 cut(s) 201, 516
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 504, 928
BssMI GATC 4 cut(s) 53, 231, 745, 1005
BssNI GRCGYC 3 cut(s) 87, 191, 294
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 930
Bst4CI ACNGT 2 cut(s) 124, 344
Bst6I CTCTTC 2 cut(s) 63, 378
BstACI GRCGYC 3 cut(s) 87, 191, 294
BstAUI TGTACA 1 cut(s) 531
BstC8I GCNNGC 3 cut(s) 475, 545, 1050
BstDEI CTNAG 2 cut(s) 20, 539
BstDSI CCRYGG 1 cut(s) 504
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 2 cut(s) 17, 846
BstHHI GCGC 3 cut(s) 16, 227, 845
BstKTI GATC 4 cut(s) 56, 234, 748, 1008
BstMBI GATC 4 cut(s) 53, 231, 745, 1005
BstMWI GCNNNNNNNGC 6 cut(s) 11, 309, 321, 324, 518, 827
BstNI CCWGG 1 cut(s) 930
BstSCI CCNGG 3 cut(s) 227, 732, 928
BstSFI CTRYAG 1 cut(s) 822
BstSLI GKGCMC 1 cut(s) 718
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 6 cut(s) 311, 421, 436, 499, 521, 908
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 504
BtrI CACGTC 1 cut(s) 890
BtsIMutI CAGTG 3 cut(s) 208, 349, 523
Cac8I GCNNGC 3 cut(s) 475, 545, 1050
CfoI GCGC 3 cut(s) 16, 227, 845
Cfr10I RCCGGY 1 cut(s) 308
CseI GACGC 2 cut(s) 76, 302
Csp6I GTAC 3 cut(s) 368, 532, 644
CviAII CATG 1 cut(s) 505
CviQI GTAC 3 cut(s) 368, 532, 644
DdeI CTNAG 2 cut(s) 20, 539
DpnI GATC 4 cut(s) 55, 233, 747, 1007
DpnII GATC 4 cut(s) 53, 231, 745, 1005
DraIII CACNNNGTG 1 cut(s) 419
DriI GACNNNNNGTC 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 63, 378
Eam1105I GACNNNNNGTC 1 cut(s) 86
EarI CTCTTC 2 cut(s) 63, 378
EciI GGCGGA 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 2 cut(s) 115, 159
Eco32I GATATC 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 928
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 2 cut(s) 115, 159
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 1 cut(s) 508
FatI CATG 1 cut(s) 504
FauI CCCGC 1 cut(s) 649
FauNDI CATATG 1 cut(s) 140
FbaI TGATCA 1 cut(s) 1005
Fnu4HI GCNGC 9 cut(s) 313, 316, 325, 328, 425, 435, 510, 513, 897
FriOI GRGCYC 2 cut(s) 115, 159
Fsp4HI GCNGC 9 cut(s) 313, 316, 325, 328, 425, 435, 510, 513, 897
FspBI CTAG 1 cut(s) 474
GlaI GCGC 3 cut(s) 15, 226, 844
GluI GCNGC 9 cut(s) 313, 316, 325, 328, 425, 435, 510, 513, 897
HaeII RGCGCY 2 cut(s) 17, 846
HapII CCGG 4 cut(s) 182, 228, 309, 734
HgaI GACGC 2 cut(s) 76, 302
HhaI GCGC 3 cut(s) 16, 227, 845
Hin1I GRCGYC 3 cut(s) 87, 191, 294
Hin1II CATG 1 cut(s) 508
Hin6I GCGC 3 cut(s) 14, 225, 843
HinP1I GCGC 3 cut(s) 14, 225, 843
HinfI GANTC 4 cut(s) 81, 173, 633, 694
HpaII CCGG 4 cut(s) 182, 228, 309, 734
HphI GGTGA 1 cut(s) 1015
Hpy166II GTNNAC 4 cut(s) 127, 446, 716, 857
Hpy188I TCNGA 8 cut(s) 117, 154, 178, 236, 292, 469, 699, 1089
Hpy188III TCNNGA 4 cut(s) 19, 283, 555, 637
Hpy8I GTNNAC 4 cut(s) 127, 446, 716, 857
Hpy99I CGWCG 4 cut(s) 193, 196, 296, 359
HpyAV CCTTC 7 cut(s) 45, 140, 280, 307, 616, 895, 980
HpyCH4III ACNGT 2 cut(s) 124, 344
HpyCH4IV ACGT 4 cut(s) 191, 741, 756, 889
HpyCH4V TGCA 6 cut(s) 424, 437, 716, 761, 806, 1052
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 309, 321, 324, 518, 827
HpyF3I CTNAG 2 cut(s) 20, 539
HpySE526I ACGT 4 cut(s) 191, 741, 756, 889
Hsp92I GRCGYC 3 cut(s) 87, 191, 294
Hsp92II CATG 1 cut(s) 508
HspAI GCGC 3 cut(s) 14, 225, 843
KpnI GGTACC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 1005
Kzo9I GATC 4 cut(s) 53, 231, 745, 1005
LmnI GCTCC 3 cut(s) 21, 149, 154
Lsp1109I GCAGC 6 cut(s) 311, 421, 436, 499, 521, 908
LweI GCATC 4 cut(s) 460, 820, 964, 1067
MaeI CTAG 1 cut(s) 474
MaeII ACGT 4 cut(s) 191, 741, 756, 889
MaeIII GTNAC 3 cut(s) 25, 203, 691
MalI GATC 4 cut(s) 55, 233, 747, 1007
MboI GATC 4 cut(s) 53, 231, 745, 1005
MboII GAAGA 4 cut(s) 50, 189, 365, 740
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 4 cut(s) 115, 159, 569, 718
MluCI AATT 4 cut(s) 286, 456, 905, 1079
MlyI GAGTC 2 cut(s) 75, 688
MmeI TCCRAC 2 cut(s) 122, 315
MroXI GAANNNNTTC 1 cut(s) 990
MslI CAYNNNNRTG 1 cut(s) 816
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 4 cut(s) 182, 228, 309, 734
MspR9I CCNGG 3 cut(s) 229, 734, 930
MvaI CCWGG 1 cut(s) 930
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 6 cut(s) 11, 309, 321, 324, 518, 827
NciI CCSGG 2 cut(s) 229, 734
NcoI CCATGG 1 cut(s) 504
NdeI CATATG 1 cut(s) 140
NdeII GATC 4 cut(s) 53, 231, 745, 1005
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 3 cut(s) 156, 248, 369
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 203, 691
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 560
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 2 cut(s) 173, 633
PflFI GACNNNGTC 1 cut(s) 193
PkrI GCNGC 9 cut(s) 314, 317, 326, 329, 426, 436, 511, 514, 898
PleI GAGTC 2 cut(s) 75, 688
PpsI GAGTC 2 cut(s) 75, 688
Psp6I CCWGG 1 cut(s) 928
PspGI CCWGG 1 cut(s) 928
PspN4I GGNNCC 3 cut(s) 156, 248, 369
PsuI RGATCY 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 3 cut(s) 369, 533, 645
RsaNI GTAC 3 cut(s) 368, 532, 644
RseI CAYNNNNRTG 1 cut(s) 816
SatI GCNGC 9 cut(s) 313, 316, 325, 328, 425, 435, 510, 513, 897
Sau3AI GATC 4 cut(s) 53, 231, 745, 1005
SchI GAGTC 2 cut(s) 75, 688
ScrFI CCNGG 3 cut(s) 229, 734, 930
SduI GDGCHC 4 cut(s) 115, 159, 569, 718
SfaNI GCATC 4 cut(s) 460, 820, 964, 1067
SfcI CTRYAG 1 cut(s) 822
SgrAI CRCCGGYG 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 2 cut(s) 275, 727
SmoI CTYRAG 2 cut(s) 275, 727
Sse9I AATT 4 cut(s) 286, 456, 905, 1079
SsiI CCGC 6 cut(s) 147, 312, 315, 318, 327, 656
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 3 cut(s) 227, 732, 928
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 124, 344
TaiI ACGT 4 cut(s) 194, 744, 759, 892
TaqI TCGA 2 cut(s) 252, 636
TasI AATT 4 cut(s) 286, 456, 905, 1079
TatI WGTACW 2 cut(s) 531, 643
TauI GCSGC 3 cut(s) 315, 318, 330
TfiI GAWTC 2 cut(s) 173, 633
TscAI CASTG 3 cut(s) 208, 349, 523
TseFI GTSAC 2 cut(s) 203, 691
TseI GCWGC 6 cut(s) 324, 424, 434, 509, 512, 896
Tsp45I GTSAC 2 cut(s) 203, 691
TspDTI ATGAA 2 cut(s) 601, 1088
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 3 cut(s) 208, 349, 523
Tth111I GACNNNGTC 1 cut(s) 193
VneI GTGCAC 1 cut(s) 714
XapI RAATTY 2 cut(s) 286, 1079
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 1 cut(s) 474
ZraI GACGTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.