Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010979

Physical Location & Seq

Genomic Coordinates Reverse (-)

9956744 .. 9959898

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1122300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCGACCTTGGCGTTCGCGGGCCTAACATCTCCGCCGTTGTCGACGTCGCGCCGGTCTCCGTTGACCCACGGAAGATTCCAAAGCCCCTTCCTCCATAAAACTCTGAAATGGGGTCAGAGATCTCTGCTTCTTCCCATAACATGCTCGTCCACCGAACCAAATCAAAACGCCGACGATTCCGAACCCAAAACGGCGTCGTTGGCCCCGTCGTCTTCGAGTGACTTGACCTACAAACTCTACGCAGGGCTCGGAGGCGTTGGGTTTCTCGAGACAACTTACTTGACTTACCTCAAGCTCACAAATTCCACTGCATTCTGCCCCACTGGCGGCGGCGGCGGAGGCGGAAGCTGCGGCGACATCCTCAGTAGCGATTACGCCGTCGTTTTTGGTGTTCCTCTTCCGCTGTTCGGAATGGTTGCTTATGGGTTAGTTGCTACTCTGGGTGTGCAGCTACTGACTGCAAAGAAGTTGCCTTTTGGAATTAGTGAATCTAATGCTCGCTTAGTTTTGCTCGGGACTACAACTTCCATGGCAGCTGCTAGCGCTTGCTTTTTGTACATTCTTAGCACCAAATTTTCGGGAGCTTCTTGCTCGTATTGCTTGTTATCTGCTCTGCTCTCTTTCACCTTGTTTTTCACCGCCTTGAAGGATTTTGGGTTGGAAAAATTACAGAAGGAAGTGGGTTTGCTGTTTTGTATAGCTAGCTTAGTGGTTGTGACTCTCAACAGGTCATATAGTGCTCTTCCACCTGTGCCCTCAAGCCCATCTGAAATTGATCTTCCATATTTTTCAACTGAGATAACAACACCATCAAGCCCGTTTGCAATAGCTCTTGCAAAGCATCTGAGTGCTATTGGTGCTAAAATGTATGGGGCTTTCTGGTGTTCACATTGTGTCGAACAAAAGCAGATGTTTGGAAGTGAGGCAGCAAAACTGGTGAACTATGTTGAGTGCTTCCCTGGTGGATTTAGGAAGGGAACTATAATGCAAAAAGAATGCTTTGATGTCGGAATTGAAGGTTTTCCTACGTGGGTGATTAATGGGCAGGTATTGAGTGGAGAAAAAGAGTTGATGGAGCTTGCACAGGAATCTGGGTTTGATTTAAAGGAATTTAATCAGACTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003955 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016651 GO:0016655 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VKOR

Protein Analysis

377

Amino Acids

40.07

Weight (kDa)

6.44

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VKOR	PF07884	80 - 215	3.8e-26	Vitamin K epoxide reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35760 AT4G35760
fragaria_vesca	FvH4_1g10920 FvH4_1g10920
malus_domestica	MD02G1122300.v1.1 MD15G1236200.v1.1
prunus_persica	Prupe.7G176300_v2.0.a1
pyrus_communis	pycom02g09520 pycom15g21020
rosa_chinensis	RchiOBHm_Chr2g0098181
rosa_laevigata	RLG00000016769
rosa_multiflora	Rmu_sc0009178.1_g000009 Rmu_sc0023861.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144220
rosa_rugosa	Rorug02G0070800
rosa_samantha	Rh2AG118100 Rh2BG121100 Rh2CG122700 Rh2DG122600
rosa_wichuraiana	Rw2G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	1039
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	2 cut(s)	20, 52
AcsI	RAATTY	3 cut(s)	304, 575, 1112
AcyI	GRCGYC	2 cut(s)	47, 197
AdeI	CACNNNGTG	1 cut(s)	896
AfaI	GTAC	1 cut(s)	560
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	329, 410
AgsI	TTSAA	3 cut(s)	649, 795, 1019
AjnI	CCWGG	1 cut(s)	961
AluBI	AGCT	9 cut(s)	298, 351, 454, 539, 587, 704, 708, 833, 1081
AluI	AGCT	9 cut(s)	298, 351, 454, 539, 587, 704, 708, 833, 1081
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	2 cut(s)	63, 266
AlwNI	CAGNNNCTG	1 cut(s)	457
Ama87I	CYCGRG	2 cut(s)	269, 515
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	2 cut(s)	22, 204
ApeKI	GCWGC	5 cut(s)	351, 451, 536, 539, 929
ApoI	RAATTY	3 cut(s)	304, 575, 1112
AseI	ATTAAT	1 cut(s)	1041
Asp700I	GAANNNNTTC	1 cut(s)	1023
AspLEI	GCGC	2 cut(s)	54, 548
AspS9I	GGNCC	2 cut(s)	22, 205
AsuHPI	GGTGA	4 cut(s)	619, 631, 952, 1048
AsuNHI	GCTAGC	2 cut(s)	542, 704
AvaI	CYCGRG	2 cut(s)	269, 515
BaeGI	GKGCMC	1 cut(s)	759
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	5 cut(s)	338, 463, 526, 548, 941
BccI	CCATC	3 cut(s)	775, 820, 1069
BceAI	ACGGC	3 cut(s)	22, 210, 365
BciT130I	CCWGG	1 cut(s)	963
BcoDI	GTCTC	2 cut(s)	63, 266
BfaI	CTAG	3 cut(s)	543, 705, 1129
BfoI	RGCGCY	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	1039
BglI	GCCNNNNNGGC	1 cut(s)	327
BglII	AGATCT	1 cut(s)	122
BisI	GCNGC	9 cut(s)	331, 334, 337, 352, 355, 452, 537, 540, 930
BlsI	GCNGC	9 cut(s)	332, 335, 338, 353, 356, 453, 538, 541, 931
Bme1390I	CCNGG	1 cut(s)	963
BmeT110I	CYCGRG	2 cut(s)	269, 515
BmgT120I	GGNCC	2 cut(s)	22, 205
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	963
BmsI	GCATC	1 cut(s)	853
BmtI	GCTAGC	2 cut(s)	546, 708
BpiI	GAAGAC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	278, 745
BsaAI	YACGTR	1 cut(s)	1032
BsaHI	GRCGYC	2 cut(s)	47, 197
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	4 cut(s)	9, 70, 531, 961
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 410
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	331, 942
BseBI	CCWGG	1 cut(s)	963
BseDI	CCNNGG	4 cut(s)	9, 70, 531, 961
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	329, 410
BseMII	CTCAG	3 cut(s)	379, 789, 839
BseNI	ACTGG	2 cut(s)	331, 942
BseSI	GKGCMC	1 cut(s)	759
BseXI	GCAGC	5 cut(s)	338, 463, 526, 548, 941
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	2 cut(s)	20, 52
BshFI	GGCC	2 cut(s)	24, 206
BsiHKAI	GWGCWC	1 cut(s)	745
BsiHKCI	CYCGRG	2 cut(s)	269, 515
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	329, 410
BsmAI	GTCTC	2 cut(s)	63, 266
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	2 cut(s)	314, 1004
BsnI	GGCC	2 cut(s)	24, 206
Bso31I	GGTCTC	1 cut(s)	63
BsoBI	CYCGRG	2 cut(s)	269, 515
Bsp1286I	GDGCHC	3 cut(s)	252, 745, 759
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	122, 778
Bsp19I	CCATGG	1 cut(s)	531
BspANI	GGCC	2 cut(s)	24, 206
BspCNI	CTCAG	3 cut(s)	378, 790, 840
BspFNI	CGCG	2 cut(s)	20, 52
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	1039
BspOI	GCTAGC	2 cut(s)	546, 708
BspQI	GCTCTTC	1 cut(s)	750
BspTNI	GGTCTC	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	331, 942
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	4 cut(s)	9, 70, 531, 961
BssMI	GATC	2 cut(s)	122, 778
BssNI	GRCGYC	2 cut(s)	47, 197
BssT1I	CCWWGG	2 cut(s)	9, 531
Bst2UI	CCWGG	1 cut(s)	963
Bst6I	CTCTTC	2 cut(s)	405, 750
BstACI	GRCGYC	2 cut(s)	47, 197
BstAUI	TGTACA	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	1032
BstC8I	GCNNGC	6 cut(s)	22, 502, 544, 550, 706, 1083
BstDEI	CTNAG	6 cut(s)	365, 505, 566, 709, 798, 848
BstDSI	CCRYGG	2 cut(s)	70, 531
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	2 cut(s)	20, 52
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	54, 548
BstKTI	GATC	2 cut(s)	125, 781
BstMAI	GTCTC	2 cut(s)	63, 266
BstMBI	GATC	2 cut(s)	122, 778
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 203, 327, 336, 342, 351, 545, 600, 860
BstNI	CCWGG	1 cut(s)	963
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	961
BstSLI	GKGCMC	1 cut(s)	759
BstUI	CGCG	2 cut(s)	20, 52
BstV1I	GCAGC	5 cut(s)	338, 463, 526, 548, 941
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	24, 206
BtgI	CCRYGG	2 cut(s)	70, 531
BtsCI	GGATG	1 cut(s)	360
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	309, 324
BveI	ACCTGC	1 cut(s)	1039
Cac8I	GCNNGC	6 cut(s)	22, 502, 544, 550, 706, 1083
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	54, 548
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	22, 205
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	2 cut(s)	144, 532
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	6 cut(s)	365, 505, 566, 709, 798, 848
DpnI	GATC	2 cut(s)	124, 780
DpnII	GATC	2 cut(s)	122, 778
DraI	TTTAAA	1 cut(s)	1107
DraIII	CACNNNGTG	1 cut(s)	896
Eam1104I	CTCTTC	2 cut(s)	405, 750
EarI	CTCTTC	2 cut(s)	405, 750
EciI	GGCGGA	3 cut(s)	24, 354, 360
Eco130I	CCWWGG	2 cut(s)	9, 531
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	63
Eco47III	AGCGCT	1 cut(s)	547
Eco88I	CYCGRG	2 cut(s)	269, 515
EcoRII	CCWGG	1 cut(s)	961
EcoT14I	CCWWGG	2 cut(s)	9, 531
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	9, 531
FaeI	CATG	2 cut(s)	147, 535
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	2 cut(s)	143, 531
FauI	CCCGC	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	9 cut(s)	331, 334, 337, 352, 355, 452, 537, 540, 930
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	9 cut(s)	331, 334, 337, 352, 355, 452, 537, 540, 930
FspBI	CTAG	3 cut(s)	543, 705, 1129
GlaI	GCGC	2 cut(s)	53, 547
GluI	GCNGC	9 cut(s)	331, 334, 337, 352, 355, 452, 537, 540, 930
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	24, 206
HapII	CCGG	1 cut(s)	55
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	2 cut(s)	54, 548
Hin1I	GRCGYC	2 cut(s)	47, 197
Hin1II	CATG	2 cut(s)	147, 535
Hin6I	GCGC	2 cut(s)	52, 546
HinP1I	GCGC	2 cut(s)	52, 546
HincII	GTYRAC	2 cut(s)	45, 66
HindII	GTYRAC	2 cut(s)	45, 66
HinfI	GANTC	6 cut(s)	78, 179, 491, 721, 1091, 1123
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	4 cut(s)	619, 631, 952, 1048
Hpy166II	GTNNAC	5 cut(s)	45, 66, 153, 890, 943
Hpy188I	TCNGA	9 cut(s)	108, 120, 184, 254, 413, 772, 849, 1013, 1122
Hpy188III	TCNNGA	4 cut(s)	269, 271, 517, 582
Hpy8I	GTNNAC	5 cut(s)	45, 66, 153, 890, 943
Hpy99I	CGWCG	6 cut(s)	49, 52, 179, 202, 214, 386
HpyAV	CCTTC	5 cut(s)	100, 643, 670, 970, 1013
HpyCH4IV	ACGT	2 cut(s)	47, 1031
HpyCH4V	TGCA	7 cut(s)	314, 451, 464, 827, 839, 991, 1085
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 203, 327, 336, 342, 351, 545, 600, 860
HpyF3I	CTNAG	6 cut(s)	365, 505, 566, 709, 798, 848
HpySE526I	ACGT	2 cut(s)	47, 1031
Hsp92I	GRCGYC	2 cut(s)	47, 197
Hsp92II	CATG	2 cut(s)	147, 535
HspAI	GCGC	2 cut(s)	52, 546
Kzo9I	GATC	2 cut(s)	122, 778
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	2 cut(s)	584, 1078
Lsp1109I	GCAGC	5 cut(s)	338, 463, 526, 548, 941
LweI	GCATC	1 cut(s)	853
MaeI	CTAG	3 cut(s)	543, 705, 1129
MaeII	ACGT	2 cut(s)	47, 1031
MaeIII	GTNAC	2 cut(s)	221, 718
MalI	GATC	2 cut(s)	124, 780
MboI	GATC	2 cut(s)	122, 778
MboII	GAAGA	6 cut(s)	87, 125, 207, 392, 737, 773
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	3 cut(s)	252, 745, 759
MluCI	AATT	7 cut(s)	304, 483, 575, 668, 774, 1014, 1112
MlyI	GAGTC	2 cut(s)	715, 1117
MmeI	TCCRAC	2 cut(s)	642, 991
MnlI	CCTC	8 cut(s)	104, 248, 302, 335, 374, 408, 769, 919
MroXI	GAANNNNTTC	1 cut(s)	1023
MseI	TTAA	3 cut(s)	1041, 1106, 1116
MslI	CAYNNNNRTG	1 cut(s)	849
MspA1I	CMGCKG	2 cut(s)	406, 539
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	963
Mva1269I	GAATGC	2 cut(s)	314, 1004
MvaI	CCWGG	1 cut(s)	963
MvnI	CGCG	2 cut(s)	20, 52
MwoI	GCNNNNNNNGC	9 cut(s)	11, 203, 327, 336, 342, 351, 545, 600, 860
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	2 cut(s)	122, 778
NheI	GCTAGC	2 cut(s)	542, 704
NlaIII	CATG	2 cut(s)	147, 535
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	221, 718
NspI	RCATGY	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	2 cut(s)	314, 1004
PdmI	GAANNNNTTC	1 cut(s)	1023
PfeI	GAWTC	4 cut(s)	78, 179, 491, 1091
PkrI	GCNGC	9 cut(s)	332, 335, 338, 353, 356, 453, 538, 541, 931
PleI	GAGTC	2 cut(s)	715, 1117
PpsI	GAGTC	2 cut(s)	715, 1117
Ppu21I	YACGTR	1 cut(s)	1032
PshBI	ATTAAT	1 cut(s)	1041
Psp6I	CCWGG	1 cut(s)	961
PspGI	CCWGG	1 cut(s)	961
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	22, 205
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
RseI	CAYNNNNRTG	1 cut(s)	849
SalI	GTCGAC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	3 cut(s)	1041, 1106, 1116
SatI	GCNGC	9 cut(s)	331, 334, 337, 352, 355, 452, 537, 540, 930
Sau3AI	GATC	2 cut(s)	122, 778
Sau96I	GGNCC	2 cut(s)	22, 205
SchI	GAGTC	2 cut(s)	715, 1117
ScrFI	CCNGG	1 cut(s)	963
SduI	GDGCHC	3 cut(s)	252, 745, 759
SfaNI	GCATC	1 cut(s)	853
Sfr274I	CTCGAG	1 cut(s)	269
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	3 cut(s)	269, 293, 760
SmoI	CTYRAG	3 cut(s)	269, 293, 760
Sse9I	AATT	7 cut(s)	304, 483, 575, 668, 774, 1014, 1112
SspMI	CTAG	3 cut(s)	543, 705, 1129
StyD4I	CCNGG	1 cut(s)	961
StyI	CCWWGG	2 cut(s)	9, 531
TaiI	ACGT	2 cut(s)	50, 1034
TaqI	TCGA	4 cut(s)	44, 218, 270, 900
TasI	AATT	7 cut(s)	304, 483, 575, 668, 774, 1014, 1112
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	4 cut(s)	333, 336, 339, 357
TfiI	GAWTC	4 cut(s)	78, 179, 491, 1091
Tru1I	TTAA	3 cut(s)	1041, 1106, 1116
Tru9I	TTAA	3 cut(s)	1041, 1106, 1116
TscAI	CASTG	2 cut(s)	316, 331
TseFI	GTSAC	2 cut(s)	221, 718
TseI	GCWGC	5 cut(s)	351, 451, 536, 539, 929
Tsp45I	GTSAC	2 cut(s)	221, 718
TspGWI	ACGGA	2 cut(s)	51, 87
TspRI	CASTG	2 cut(s)	316, 331
VspI	ATTAAT	1 cut(s)	1041
XapI	RAATTY	3 cut(s)	304, 575, 1112
XceI	RCATGY	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	1023
XspI	CTAG	3 cut(s)	543, 705, 1129
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.