Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010979

Physical Location & Seq

Genomic Coordinates Reverse (-)

5505836 .. 5507038

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0070800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGCACAACACGAAAAAGGTATCAAAGGGACTATTGCAGAATGATGAATTGTATCAGTATATCTTGGAGACTAGTGTGTATCCGCGTGAACCGGAGCCTCTCAAGGAGCTTAGGGATGCCACTGCCAGCCACCCCAGGGCTGAGATGGCTACTGCACCAGATGCAGGCCAATTGATGACCATGCTGTTGGGGCTAGTAGATGCAAAGAAGACGATTGAAGTTGGAGTTTTTACTGGATACTCTCTTCTCCTCACTGCTCTTGCAATTCCTGAGGATGGCAAGATTGTAGCCATAGATGTAAACCGTAAGCCATATGATCAAATAGGATTTCCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGACCTCATTGAATCTGAGGCCCTGCCAGTTCTTGATAAGCTATTGGAACAACATGAAAATGAAGGAAGTTTTGACTTTGCTTTTGTCGATGCGGACAAGGTTAACTATTGGAATTACCATGAGAGACTAATGAAGCTGCTGAAGGTGGGAGGTATAGCTGTGTATGATAACACTCTTTGGGGAGGGTCAGTTGTAATGCCTATTGAGTCGACTCCAGAACACATGAAACCAGGCAGACAGTACACTATAGAGCTCAACAAGTTGCTTGCTGCTGATACTCGTGTCCAAATTTCACATGCCTCTTTGGGTGATGGGATCACAATTTGTAGGCGACTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003955 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016651 GO:0016655 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VKOR

Protein Analysis

236

Amino Acids

26.42

Weight (kDa)

5.41

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 235	5e-76	O-methyltransferase
Methyltransf_24	PF13578	73 - 180	1.1e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35760 AT4G35760
fragaria_vesca	FvH4_1g10920 FvH4_1g10920
malus_domestica	MD02G1122300.v1.1 MD15G1236200.v1.1
prunus_persica	Prupe.7G176300_v2.0.a1
pyrus_communis	pycom02g09520 pycom15g21020
rosa_chinensis	RchiOBHm_Chr2g0098181
rosa_laevigata	RLG00000016769
rosa_multiflora	Rmu_sc0009178.1_g000009 Rmu_sc0023861.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144220
rosa_rugosa	Rorug02G0070800
rosa_samantha	Rh2AG118100 Rh2BG121100 Rh2CG122700 Rh2DG122600
rosa_wichuraiana	Rw2G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	578
AccII	CGCG	1 cut(s)	88
AciI	CCGC	2 cut(s)	86, 461
AclWI	GGATC	1 cut(s)	692
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
AgsI	TTSAA	2 cut(s)	221, 380
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	137, 598
AluBI	AGCT	6 cut(s)	112, 350, 409, 505, 527, 622
AluI	AGCT	6 cut(s)	112, 350, 409, 505, 527, 622
Alw21I	GWGCWC	3 cut(s)	9, 363, 624
Alw26I	GTCTC	2 cut(s)	65, 487
AlwI	GGATC	1 cut(s)	692
AoxI	GGCC	2 cut(s)	169, 387
ApeKI	GCWGC	2 cut(s)	505, 638
ApoI	RAATTY	1 cut(s)	657
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	273
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BanII	GRGCYC	1 cut(s)	624
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	3 cut(s)	9, 363, 624
BbvI	GCAGC	2 cut(s)	492, 625
BccI	CCATC	3 cut(s)	142, 272, 674
BciT130I	CCWGG	2 cut(s)	139, 600
BciVI	GTATCC	2 cut(s)	93, 233
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	65, 487
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	2 cut(s)	75, 197
BfmI	CTRYAG	1 cut(s)	615
BfuI	GTATCC	2 cut(s)	93, 233
BisI	GCNGC	2 cut(s)	506, 639
BlsI	GCNGC	2 cut(s)	507, 640
Bme1390I	CCNGG	2 cut(s)	139, 600
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	139, 600
BmsI	GCATC	4 cut(s)	109, 154, 193, 448
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	137, 138
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 167, 278
Bse1I	ACTGG	2 cut(s)	241, 395
Bse21I	CCTNAGG	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	139, 600
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	2 cut(s)	124, 283
BseLI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BseMII	CTCAG	3 cut(s)	135, 264, 375
BseNI	ACTGG	2 cut(s)	241, 395
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	492, 625
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	171, 389
BsiHKAI	GWGCWC	3 cut(s)	9, 363, 624
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BsmAI	GTCTC	2 cut(s)	65, 487
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	171, 389
Bsp1286I	GDGCHC	3 cut(s)	9, 363, 624
Bsp143I	GATC	2 cut(s)	319, 684
BspACI	CCGC	2 cut(s)	86, 461
BspANI	GGCC	2 cut(s)	171, 389
BspCNI	CTCAG	3 cut(s)	136, 265, 376
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	692
BsrI	ACTGG	2 cut(s)	241, 395
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	2 cut(s)	319, 684
BssSI	CACGAG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	139, 600
Bst4CI	ACNGT	2 cut(s)	308, 609
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	130, 169, 636
BstDEI	CTNAG	4 cut(s)	113, 144, 273, 384
BstF5I	GGATG	2 cut(s)	124, 283
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	322, 687
BstMAI	GTCTC	2 cut(s)	65, 487
BstMBI	GATC	2 cut(s)	319, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
BstNI	CCWGG	2 cut(s)	139, 600
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	137, 598
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	492, 625
BstV2I	GAAGAC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	93, 233
BsuRI	GGCC	2 cut(s)	171, 389
BtsCI	GGATG	2 cut(s)	124, 283
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	2 cut(s)	123, 255
Cac8I	GCNNGC	3 cut(s)	130, 169, 636
Cfr13I	GGNCC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	5 cut(s)	184, 422, 488, 592, 665
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	4 cut(s)	113, 144, 273, 384
DpnI	GATC	2 cut(s)	321, 686
DpnII	GATC	2 cut(s)	319, 684
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	624
Eco53kI	GAGCTC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	137, 598
EcoT38I	GRGCYC	1 cut(s)	624
FaeI	CATG	5 cut(s)	187, 425, 491, 595, 668
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	5 cut(s)	183, 421, 487, 591, 664
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	578
Fnu4HI	GCNGC	2 cut(s)	506, 639
FokI	GGATG	2 cut(s)	131, 290
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	2 cut(s)	506, 639
FspBI	CTAG	2 cut(s)	75, 197
GluI	GCNGC	2 cut(s)	506, 639
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	171, 389
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	5 cut(s)	187, 425, 491, 595, 668
HincII	GTYRAC	2 cut(s)	472, 579
HindII	GTYRAC	2 cut(s)	472, 579
HinfI	GANTC	3 cut(s)	380, 575, 580
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	5 cut(s)	92, 304, 472, 579, 612
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	3 cut(s)	272, 401, 584
Hpy8I	GTNNAC	5 cut(s)	92, 304, 472, 579, 612
HpyAV	CCTTC	2 cut(s)	425, 505
HpyCH4III	ACNGT	2 cut(s)	308, 609
HpyCH4V	TGCA	5 cut(s)	40, 158, 167, 206, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
HpyF3I	CTNAG	4 cut(s)	113, 144, 273, 384
Hsp92II	CATG	5 cut(s)	187, 425, 491, 595, 668
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	319, 684
LmnI	GCTCC	3 cut(s)	4, 97, 109
Lsp1109I	GCAGC	2 cut(s)	492, 625
LweI	GCATC	4 cut(s)	109, 154, 193, 448
MaeI	CTAG	2 cut(s)	75, 197
MalI	GATC	2 cut(s)	321, 686
MboI	GATC	2 cut(s)	319, 684
MboII	GAAGA	2 cut(s)	223, 239
MfeI	CAATTG	1 cut(s)	173
MhlI	GDGCHC	3 cut(s)	9, 363, 624
MluCI	AATT	7 cut(s)	50, 173, 267, 366, 481, 657, 690
MlyI	GAGTC	2 cut(s)	574, 584
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	8 cut(s)	111, 263, 268, 379, 383, 512, 545, 679
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	139, 600
MunI	CAATTG	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	139, 600
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	2 cut(s)	319, 684
NlaIII	CATG	5 cut(s)	187, 425, 491, 595, 668
NlaIV	GGNNCC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	668
PasI	CCCWGGG	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	507, 640
PleI	GAGTC	2 cut(s)	574, 583
PpsI	GAGTC	2 cut(s)	574, 583
Psp124BI	GAGCTC	1 cut(s)	624
Psp6I	CCWGG	2 cut(s)	137, 598
PspGI	CCWGG	2 cut(s)	137, 598
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	388
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	624
SalI	GTCGAC	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	506, 639
Sau3AI	GATC	2 cut(s)	319, 684
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	2 cut(s)	574, 584
ScrFI	CCNGG	2 cut(s)	139, 600
SduI	GDGCHC	3 cut(s)	9, 363, 624
SfaNI	GCATC	4 cut(s)	109, 154, 193, 448
SfcI	CTRYAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	7 cut(s)	50, 173, 267, 366, 481, 657, 690
SsiI	CCGC	2 cut(s)	86, 461
SspMI	CTAG	2 cut(s)	75, 197
SstI	GAGCTC	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	137, 598
TaaI	ACNGT	2 cut(s)	308, 609
TaqI	TCGA	2 cut(s)	456, 578
TasI	AATT	7 cut(s)	50, 173, 267, 366, 481, 657, 690
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	2 cut(s)	130, 262
TseI	GCWGC	2 cut(s)	505, 638
TspDTI	ATGAA	5 cut(s)	63, 438, 444, 515, 608
TspRI	CASTG	2 cut(s)	130, 262
XapI	RAATTY	1 cut(s)	657
XceI	RCATGY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	578
XspI	CTAG	2 cut(s)	75, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.