Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023861.1

Orthogroup ID

OG0010979

Physical Location & Seq

Genomic Coordinates Forward (+)

3429 .. 5932

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023861.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggctaccttggcgctcctgagcctaacatctccttcactctcctctcccagatctcttccccgctcaaatcacaccagatttggtgtccttactaccacttcgggttgggctcggacaactgtgcggcatcccgttctatgctcagcttcggagcccaatcaaaacgccgaatccgaaccggaaacgacgtcgtctccgccgtcgtcttcgagtgacttgacctacaaactatgtgccgggctcggaggcatcgggtttctcgaaacgacctacttgaccttcctcaagctcacgaattccgatgccttctgccccaccgccggcggcggaagttgcggcgacatcctcaacagtgaatacgccgtcgtttttggggttcctcttccgttgtttggaatgcttgcatatgggttagttgctacacttggtgtgcagctgttgactgcaaagagtttaccttttggaattgggaaatctgatgctagcttggttttacttgggactacgacctccatggcagctgctagtgcttgttttttgtacattcttagcacacagttttcgggaacttcgtgttcgtattgtttgttatcggctttcctctccttcagcttatttttcatcactttaaaggatttagggttcgaaaaagtacaaaaagaggcgggtttattggtgtgtatagctgttttggtggctgtgactctgaacaggtcatatagtgcacctgtatcctcaagcccatctgatgttgatcttccatactttacaactgagataacaacaccatcaagtccgtttgctatatctcttgcaaagcatctaaatgctataggtgctaaaatgtatggcgctttttggtgttcacattgtgttgaacaaaaacagatgtttggacgtgaagcagcaaaggaattgaactatgttgagtgcttccctggtggatttagaaagggaactataatggcaaaggcatgtattgatgccaaacttgaaggttttcctacttgggtcatcaatggacaggttttgagtggggaaaaagatttgctagagcttgcagaggcatctgggtttgagttgaacgaatttagtcagaccctcatagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003955 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016651 GO:0016655 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VKOR

Protein Analysis

371

Amino Acids

39.36

Weight (kDa)

5.36

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35760 AT4G35760
fragaria_vesca	FvH4_1g10920 FvH4_1g10920
malus_domestica	MD02G1122300.v1.1 MD15G1236200.v1.1
prunus_persica	Prupe.7G176300_v2.0.a1
pyrus_communis	pycom02g09520 pycom15g21020
rosa_chinensis	RchiOBHm_Chr2g0098181
rosa_laevigata	RLG00000016769
rosa_multiflora	Rmu_sc0009178.1_g000009 Rmu_sc0023861.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144220
rosa_rugosa	Rorug02G0070800
rosa_samantha	Rh2AG118100 Rh2BG121100 Rh2CG122700 Rh2DG122600
rosa_wichuraiana	Rw2G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	66
AciI	CCGC	8 cut(s)	64, 127, 200, 321, 327, 330, 339, 668
AcsI	RAATTY	2 cut(s)	298, 1091
AcuI	CTGAAG	1 cut(s)	595
AcyI	GRCGYC	1 cut(s)	191
AdeI	CACNNNGTG	2 cut(s)	431, 875
AfaI	GTAC	2 cut(s)	545, 657
AfiI	CCNNNNNNNGG	2 cut(s)	323, 395
AgsI	TTSAA	4 cut(s)	881, 922, 998, 1087
AjiI	CACGTC	1 cut(s)	902
AjnI	CCWGG	1 cut(s)	940
AloI	GAACNNNNNNTCC	2 cut(s)	629, 661
AluBI	AGCT	8 cut(s)	149, 292, 439, 489, 524, 615, 689, 1060
AluI	AGCT	8 cut(s)	149, 292, 439, 489, 524, 615, 689, 1060
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	726
ApaLI	GTGCAC	1 cut(s)	726
ApeKI	GCWGC	4 cut(s)	436, 521, 524, 908
ApoI	RAATTY	2 cut(s)	298, 1091
Asp700I	GAANNNNTTC	1 cut(s)	1002
AspLEI	GCGC	2 cut(s)	16, 857
AsuC2I	CCSGG	1 cut(s)	241
AsuII	TTCGAA	1 cut(s)	648
AsuNHI	GCTAGC	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	730
BanII	GRGCYC	3 cut(s)	115, 159, 246
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	4 cut(s)	448, 511, 533, 920
BccI	CCATC	2 cut(s)	754, 799
BceAI	ACGGC	2 cut(s)	187, 350
BciT130I	CCWGG	1 cut(s)	942
BciVI	GTATCC	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	3 cut(s)	486, 528, 1055
BfmI	CTRYAG	1 cut(s)	834
BfoI	RGCGCY	2 cut(s)	17, 858
BfuI	GTATCC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	7 cut(s)	128, 328, 340, 437, 522, 525, 909
BlpI	GCTNAGC	1 cut(s)	145
BlsI	GCNGC	7 cut(s)	129, 329, 341, 438, 523, 526, 910
Bme1390I	CCNGG	2 cut(s)	241, 942
BmgBI	CACGTC	1 cut(s)	902
BmiI	GGNNCC	2 cut(s)	156, 381
BmrFI	CCNGG	2 cut(s)	241, 942
BmsI	GCATC	7 cut(s)	139, 261, 295, 472, 832, 976, 1079
BmtI	GCTAGC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	648
BpuEI	CTTGAG	2 cut(s)	272, 724
BpuMI	CCSGG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	9, 516, 940
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 395
Bse118I	RCCGGY	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	942
BseDI	CCNNGG	3 cut(s)	9, 516, 940
BseGI	GGATG	2 cut(s)	130, 345
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	2 cut(s)	323, 395
BseMII	CTCAG	3 cut(s)	11, 159, 768
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	4 cut(s)	448, 511, 533, 920
BsgI	GTGCAG	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	730
BsiSI	CCGG	3 cut(s)	182, 240, 324
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	323, 395
BsmAI	GTCTC	1 cut(s)	201
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	405
Bsp119I	TTCGAA	1 cut(s)	648
Bsp1286I	GDGCHC	4 cut(s)	115, 159, 246, 730
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	53, 757
Bsp1720I	GCTNAGC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	8 cut(s)	64, 127, 200, 321, 327, 330, 339, 668
BspCNI	CTCAG	3 cut(s)	12, 158, 769
BspLI	GGNNCC	2 cut(s)	156, 381
BspOI	GCTAGC	1 cut(s)	489
BspT104I	TTCGAA	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	543
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	9, 516, 940
BssMI	GATC	2 cut(s)	53, 757
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	9, 516
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	3 cut(s)	124, 356, 561
Bst6I	CTCTTC	2 cut(s)	63, 390
BstACI	GRCGYC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	543
BstBI	TTCGAA	1 cut(s)	648
BstC8I	GCNNGC	4 cut(s)	325, 405, 487, 1062
BstDEI	CTNAG	4 cut(s)	20, 145, 551, 777
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	130, 345
BstH2I	RGCGCY	2 cut(s)	17, 858
BstHHI	GCGC	2 cut(s)	16, 857
BstKTI	GATC	2 cut(s)	56, 760
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	53, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 336, 530, 839
BstNI	CCWGG	1 cut(s)	942
BstNSI	RCATGY	1 cut(s)	981
BstSCI	CCNGG	2 cut(s)	239, 940
BstSFI	CTRYAG	1 cut(s)	834
BstSLI	GKGCMC	1 cut(s)	730
BstV1I	GCAGC	4 cut(s)	448, 511, 533, 920
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	745
BtgI	CCRYGG	1 cut(s)	516
BtrI	CACGTC	1 cut(s)	902
BtsCI	GGATG	2 cut(s)	130, 345
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	4 cut(s)	325, 405, 487, 1062
CfoI	GCGC	2 cut(s)	16, 857
Cfr10I	RCCGGY	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	544, 656
CviAII	CATG	2 cut(s)	517, 978
CviQI	GTAC	2 cut(s)	544, 656
DdeI	CTNAG	4 cut(s)	20, 145, 551, 777
DpnI	GATC	2 cut(s)	55, 759
DpnII	GATC	2 cut(s)	53, 757
DraI	TTTAAA	1 cut(s)	633
DraIII	CACNNNGTG	2 cut(s)	431, 875
Eam1104I	CTCTTC	2 cut(s)	63, 390
EarI	CTCTTC	2 cut(s)	63, 390
EciI	GGCGGA	2 cut(s)	189, 345
Eco130I	CCWWGG	2 cut(s)	9, 516
Eco24I	GRGCYC	3 cut(s)	115, 159, 246
Eco57I	CTGAAG	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	940
EcoT14I	CCWWGG	2 cut(s)	9, 516
EcoT38I	GRGCYC	3 cut(s)	115, 159, 246
ErhI	CCWWGG	2 cut(s)	9, 516
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	2 cut(s)	520, 981
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	2 cut(s)	516, 977
FauI	CCCGC	2 cut(s)	71, 661
FauNDI	CATATG	1 cut(s)	409
Fnu4HI	GCNGC	7 cut(s)	128, 328, 340, 437, 522, 525, 909
FokI	GGATG	2 cut(s)	117, 332
FriOI	GRGCYC	3 cut(s)	115, 159, 246
Fsp4HI	GCNGC	7 cut(s)	128, 328, 340, 437, 522, 525, 909
FspBI	CTAG	3 cut(s)	486, 528, 1055
GlaI	GCGC	2 cut(s)	15, 856
GluI	GCNGC	7 cut(s)	128, 328, 340, 437, 522, 525, 909
HaeII	RGCGCY	2 cut(s)	17, 858
HapII	CCGG	3 cut(s)	182, 240, 324
HhaI	GCGC	2 cut(s)	16, 857
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	520, 981
Hin6I	GCGC	2 cut(s)	14, 855
HinP1I	GCGC	2 cut(s)	14, 855
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	2 cut(s)	173, 706
HpaII	CCGG	3 cut(s)	182, 240, 324
Hpy166II	GTNNAC	4 cut(s)	444, 458, 728, 869
Hpy188I	TCNGA	9 cut(s)	117, 154, 178, 248, 304, 481, 711, 751, 1101
Hpy188III	TCNNGA	4 cut(s)	19, 263, 295, 567
Hpy8I	GTNNAC	4 cut(s)	444, 458, 728, 869
Hpy99I	CGWCG	4 cut(s)	193, 196, 208, 371
HpyAV	CCTTC	5 cut(s)	45, 292, 319, 619, 992
HpyCH4III	ACNGT	3 cut(s)	124, 356, 561
HpyCH4IV	ACGT	2 cut(s)	191, 901
HpyCH4V	TGCA	6 cut(s)	407, 436, 449, 728, 818, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 336, 530, 839
HpyF3I	CTNAG	4 cut(s)	20, 145, 551, 777
HpySE526I	ACGT	2 cut(s)	191, 901
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	520, 981
HspAI	GCGC	2 cut(s)	14, 855
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	53, 757
LmnI	GCTCC	2 cut(s)	21, 154
Lsp1109I	GCAGC	4 cut(s)	448, 511, 533, 920
LweI	GCATC	7 cut(s)	139, 261, 295, 472, 832, 976, 1079
MaeI	CTAG	3 cut(s)	486, 528, 1055
MaeII	ACGT	2 cut(s)	191, 901
MaeIII	GTNAC	2 cut(s)	215, 703
MalI	GATC	2 cut(s)	55, 759
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	2 cut(s)	53, 757
MboII	GAAGA	4 cut(s)	50, 201, 377, 752
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	4 cut(s)	115, 159, 246, 730
MluCI	AATT	4 cut(s)	298, 468, 917, 1091
MlyI	GAGTC	1 cut(s)	700
MreI	CGCCGGCG	1 cut(s)	323
MroNI	GCCGGC	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	1002
MseI	TTAA	1 cut(s)	632
MslI	CAYNNNNRTG	1 cut(s)	828
MspA1I	CMGCKG	2 cut(s)	439, 524
MspI	CCGG	3 cut(s)	182, 240, 324
MspR9I	CCNGG	2 cut(s)	241, 942
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	942
MwoI	GCNNNNNNNGC	4 cut(s)	11, 336, 530, 839
NaeI	GCCGGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	2 cut(s)	53, 757
NgoMIV	GCCGGC	1 cut(s)	323
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	2 cut(s)	520, 981
NlaIV	GGNNCC	2 cut(s)	156, 381
NmuCI	GTSAC	2 cut(s)	215, 703
NspI	RCATGY	1 cut(s)	981
NspV	TTCGAA	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	4 cut(s)	174, 200, 261, 572
PctI	GAATGC	1 cut(s)	405
PdiI	GCCGGC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	193
PkrI	GCNGC	7 cut(s)	129, 329, 341, 438, 523, 526, 910
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	940
PspGI	CCWGG	1 cut(s)	940
PspN4I	GGNNCC	2 cut(s)	156, 381
PsuI	RGATCY	1 cut(s)	53
PsyI	GACNNNGTC	1 cut(s)	193
PvuII	CAGCTG	2 cut(s)	439, 524
RsaI	GTAC	2 cut(s)	545, 657
RsaNI	GTAC	2 cut(s)	544, 656
RseI	CAYNNNNRTG	1 cut(s)	828
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	7 cut(s)	128, 328, 340, 437, 522, 525, 909
Sau3AI	GATC	2 cut(s)	53, 757
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	2 cut(s)	241, 942
SduI	GDGCHC	4 cut(s)	115, 159, 246, 730
SfaNI	GCATC	7 cut(s)	139, 261, 295, 472, 832, 976, 1079
SfcI	CTRYAG	1 cut(s)	834
SfuI	TTCGAA	1 cut(s)	648
SgrAI	CRCCGGYG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	2 cut(s)	287, 739
SmoI	CTYRAG	2 cut(s)	287, 739
Sse9I	AATT	4 cut(s)	298, 468, 917, 1091
SsiI	CCGC	8 cut(s)	64, 127, 200, 321, 327, 330, 339, 668
SspMI	CTAG	3 cut(s)	486, 528, 1055
StyD4I	CCNGG	2 cut(s)	239, 940
StyI	CCWWGG	2 cut(s)	9, 516
TaaI	ACNGT	3 cut(s)	124, 356, 561
TaiI	ACGT	2 cut(s)	194, 904
TaqI	TCGA	3 cut(s)	212, 264, 648
TasI	AATT	4 cut(s)	298, 468, 917, 1091
TatI	WGTACW	2 cut(s)	543, 655
TauI	GCSGC	3 cut(s)	130, 330, 342
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	215, 703
TseI	GCWGC	4 cut(s)	436, 521, 524, 908
Tsp45I	GTSAC	2 cut(s)	215, 703
TspDTI	ATGAA	1 cut(s)	613
TspGWI	ACGGA	2 cut(s)	378, 789
TspRI	CASTG	1 cut(s)	361
Tth111I	GACNNNGTC	1 cut(s)	193
VneI	GTGCAC	1 cut(s)	726
XapI	RAATTY	2 cut(s)	298, 1091
XceI	RCATGY	1 cut(s)	981
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	3 cut(s)	486, 528, 1055
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.