pycom02g09520

Thiol-disulfide oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010979
Physical Location & Seq
Reverse (-)
6592362 .. 6595060
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09520.5

Sequence Viewer

Length: 1137 bp
ATGGCGACCTTGGCGTTCGCGAGCGTAACATCTCCGCCGTTCTCGTCGTCGCGCCGGTCTCCGTCGACCCACGGAAGATTCCAAATCCCCTTCCTCCATAAAACTCCGAAATGGGGTCAGAGATCTCTGCTTCTTCCCATAACATGCTCGTCTACCGAACCAAATCAAAACGCCGACGACTCCGAACCCAAAACGGCGTCGTTGGCCCCGTCGTCTTCGAGTGACTTGACCTACAAACTCTACGCAGGGCTCGGAGGTGTTGGGTTTCTCGAGACGACTTACTTGACTTACCTCAAGCTCACAAATTCCAATGCGTTCTGCCCCACCGCCGGCGGCGGCGGCGGCGGCGGAGGAAGCTGCGGCGACATCCTCAGTAGCGATTACGCTGTCGTTTTTGGTGTTCCTCTTCCGCTGTTTGGAATGGTTGCTTATGGGTTAGTTGCTACTCTGGGTGTGCAGCTACTGACTGCAAAGAAGTTGCCTTTTGGAATTGATGAATCTAATGCTCGCTTAGTTTTGCTCGGGACTACAACTTCCATGGCAGCTGCTAGCGCTTGCTTTTTGTACATTCTTAGCACCAAATTTTCGGGAGCTTCTTGCTCGTATTGCTTGTTATCTGCTCTGCTCTCTTTCACCTTGTTTTTCATCGCCTTAAAGGATTTTGGGTTGGAAAAAGTACAGAAGGAAGTGGGTTTGCTGTTTTGTATAGCTAGCTTAGTGGTTGTGACTCTCAACAGGTCATATAGTGCTCTTCCACCTGTGCCCTCAAGCCCGTCTGAAATTGATCTTCCATATTTTTCAACTGAGATAACAACACCATCAAGCCCGTTTGCAATAGCTCTTGCAAAGCATCTGAGTGCTATTGGTGCTAAAATGTATGGGGCTTTCTGGTGTTCACATTGTGTCGAACAAAAGCAGATGTTTGGAAGTGAGGCAGCAAAACTGTTGAACTATGTTGAGTGCTTCCCTGGTGGATTTAGGAAGGGAACTATAATGCAAAAGGAATGCTTTGATGTCGGAATTGAAGGTTTTCCTACATGGGTGATTAACGGGCAGGTATTGAGTGGAGAAAAAGAGTTGATGGAGCTTGCACAGGAATCTGGGTTTGATTTAAAGGAATTTAATCAGACTCCCTAG

Protein Analysis

379

Amino Acids

40.27

Weight (kDa)

6.12

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35760 AT4G35760
fragaria_vesca FvH4_1g10920 FvH4_1g10920
malus_domestica MD02G1122300.v1.1 MD15G1236200.v1.1
prunus_persica Prupe.7G176300_v2.0.a1
pyrus_communis pycom02g09520 pycom15g21020
rosa_chinensis RchiOBHm_Chr2g0098181
rosa_laevigata RLG00000016769
rosa_multiflora Rmu_sc0009178.1_g000009 Rmu_sc0023861.1_g000003
rosa_roxburghii Rroxscaffold_2G00144220
rosa_rugosa Rorug02G0070800
rosa_samantha Rh2AG118100 Rh2BG121100 Rh2CG122700 Rh2DG122600
rosa_wichuraiana Rw2G009240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1045
AccI GTMKAC 2 cut(s) 65, 152
AccII CGCG 2 cut(s) 20, 52
AcsI RAATTY 3 cut(s) 304, 581, 1118
AcyI GRCGYC 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 902
AfaI GTAC 2 cut(s) 566, 678
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 3 cut(s) 113, 329, 416
AgsI TTSAA 3 cut(s) 801, 949, 1025
AjnI CCWGG 1 cut(s) 967
AluBI AGCT 9 cut(s) 298, 357, 460, 545, 593, 710, 714, 839, 1087
AluI AGCT 9 cut(s) 298, 357, 460, 545, 593, 710, 714, 839, 1087
Alw21I GWGCWC 1 cut(s) 751
Alw26I GTCTC 2 cut(s) 63, 266
AlwNI CAGNNNCTG 1 cut(s) 463
Ama87I CYCGRG 2 cut(s) 269, 521
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 5 cut(s) 357, 457, 542, 545, 935
ApoI RAATTY 3 cut(s) 304, 581, 1118
Asp700I GAANNNNTTC 1 cut(s) 1029
AspLEI GCGC 2 cut(s) 54, 554
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 625, 1054
AsuNHI GCTAGC 2 cut(s) 548, 710
AvaI CYCGRG 2 cut(s) 269, 521
BaeGI GKGCMC 1 cut(s) 765
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 751
BbvI GCAGC 5 cut(s) 344, 469, 532, 554, 947
BccI CCATC 2 cut(s) 826, 1075
BceAI ACGGC 2 cut(s) 22, 210
BciT130I CCWGG 1 cut(s) 969
BcoDI GTCTC 2 cut(s) 63, 266
BfaI CTAG 3 cut(s) 549, 711, 1135
BfoI RGCGCY 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 1045
BglII AGATCT 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 969
BmeT110I CYCGRG 2 cut(s) 269, 521
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 969
BmsI GCATC 1 cut(s) 859
BmtI GCTAGC 2 cut(s) 552, 714
BpiI GAAGAC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 278, 751
BsaHI GRCGYC 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 4 cut(s) 9, 70, 537, 967
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 329, 416
Bse118I RCCGGY 2 cut(s) 54, 329
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 4 cut(s) 9, 70, 537, 967
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 3 cut(s) 113, 329, 416
BseMII CTCAG 3 cut(s) 385, 795, 845
BseSI GKGCMC 1 cut(s) 765
BseXI GCAGC 5 cut(s) 344, 469, 532, 554, 947
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 2 cut(s) 20, 52
BshFI GGCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 751
BsiHKCI CYCGRG 2 cut(s) 269, 521
BsiSI CCGG 2 cut(s) 55, 330
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 3 cut(s) 113, 329, 416
BsmAI GTCTC 2 cut(s) 63, 266
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 1 cut(s) 1010
BsnI GGCC 1 cut(s) 206
Bso31I GGTCTC 1 cut(s) 63
BsoBI CYCGRG 2 cut(s) 269, 521
Bsp1286I GDGCHC 3 cut(s) 252, 751, 765
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 2 cut(s) 122, 784
Bsp19I CCATGG 1 cut(s) 537
Bsp68I TCGCGA 1 cut(s) 20
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 3 cut(s) 384, 796, 846
BspFNI CGCG 2 cut(s) 20, 52
BspLI GGNNCC 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 1045
BspOI GCTAGC 2 cut(s) 552, 714
BspQI GCTCTTC 1 cut(s) 756
BspTNI GGTCTC 1 cut(s) 63
BsrFI RCCGGY 2 cut(s) 54, 329
BsrGI TGTACA 1 cut(s) 564
BssAI RCCGGY 2 cut(s) 54, 329
BssECI CCNNGG 4 cut(s) 9, 70, 537, 967
BssMI GATC 2 cut(s) 122, 784
BssNI GRCGYC 1 cut(s) 197
BssT1I CCWWGG 2 cut(s) 9, 537
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 1 cut(s) 945
Bst6I CTCTTC 2 cut(s) 411, 756
BstACI GRCGYC 1 cut(s) 197
BstAUI TGTACA 1 cut(s) 564
BstC8I GCNNGC 7 cut(s) 22, 331, 508, 550, 556, 712, 1089
BstDEI CTNAG 6 cut(s) 371, 511, 572, 715, 804, 854
BstDSI CCRYGG 2 cut(s) 70, 537
BstF5I GGATG 1 cut(s) 366
BstFNI CGCG 2 cut(s) 20, 52
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 54, 554
BstKTI GATC 2 cut(s) 125, 787
BstMAI GTCTC 2 cut(s) 63, 266
BstMBI GATC 2 cut(s) 122, 784
BstMWI GCNNNNNNNGC 9 cut(s) 11, 203, 339, 342, 345, 354, 551, 606, 866
BstNI CCWGG 1 cut(s) 969
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 967
BstSLI GKGCMC 1 cut(s) 765
BstUI CGCG 2 cut(s) 20, 52
BstV1I GCAGC 5 cut(s) 344, 469, 532, 554, 947
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BsuRI GGCC 1 cut(s) 206
BtgI CCRYGG 2 cut(s) 70, 537
BtgZI GCGATG 1 cut(s) 631
BtsCI GGATG 1 cut(s) 366
BtuMI TCGCGA 1 cut(s) 20
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 7 cut(s) 22, 331, 508, 550, 556, 712, 1089
CaiI CAGNNNCTG 1 cut(s) 463
CfoI GCGC 2 cut(s) 54, 554
Cfr10I RCCGGY 2 cut(s) 54, 329
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 565, 677
CviAII CATG 3 cut(s) 144, 538, 1038
CviQI GTAC 2 cut(s) 565, 677
DdeI CTNAG 6 cut(s) 371, 511, 572, 715, 804, 854
DpnI GATC 2 cut(s) 124, 786
DpnII GATC 2 cut(s) 122, 784
DraI TTTAAA 1 cut(s) 1113
DraIII CACNNNGTG 1 cut(s) 902
Eam1104I CTCTTC 2 cut(s) 411, 756
EarI CTCTTC 2 cut(s) 411, 756
EciI GGCGGA 2 cut(s) 24, 363
Eco130I CCWWGG 2 cut(s) 9, 537
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 63
Eco47III AGCGCT 1 cut(s) 553
Eco88I CYCGRG 2 cut(s) 269, 521
EcoRII CCWGG 1 cut(s) 967
EcoT14I CCWWGG 2 cut(s) 9, 537
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 2 cut(s) 9, 537
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 3 cut(s) 147, 541, 1041
FalI AAGNNNNNCTT 2 cut(s) 992, 1024
FaqI GGGAC 1 cut(s) 538
FatI CATG 3 cut(s) 143, 537, 1037
FblI GTMKAC 2 cut(s) 65, 152
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 252
FspBI CTAG 3 cut(s) 549, 711, 1135
GlaI GCGC 2 cut(s) 53, 553
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 1 cut(s) 206
HapII CCGG 2 cut(s) 55, 330
HgaI GACGC 1 cut(s) 186
HhaI GCGC 2 cut(s) 54, 554
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 3 cut(s) 147, 541, 1041
Hin6I GCGC 2 cut(s) 52, 552
HinP1I GCGC 2 cut(s) 52, 552
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 6 cut(s) 78, 179, 497, 727, 1097, 1129
HpaII CCGG 2 cut(s) 55, 330
HphI GGTGA 2 cut(s) 625, 1054
Hpy166II GTNNAC 3 cut(s) 66, 153, 896
Hpy188I TCNGA 8 cut(s) 108, 120, 184, 254, 778, 855, 1019, 1128
Hpy188III TCNNGA 5 cut(s) 19, 269, 271, 523, 588
Hpy8I GTNNAC 3 cut(s) 66, 153, 896
Hpy99I CGWCG 6 cut(s) 49, 52, 67, 179, 202, 214
HpyAV CCTTC 4 cut(s) 100, 676, 976, 1019
HpyCH4III ACNGT 1 cut(s) 945
HpyCH4V TGCA 6 cut(s) 457, 470, 833, 845, 997, 1091
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 203, 339, 342, 345, 354, 551, 606, 866
HpyF3I CTNAG 6 cut(s) 371, 511, 572, 715, 804, 854
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 3 cut(s) 147, 541, 1041
HspAI GCGC 2 cut(s) 52, 552
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 2 cut(s) 122, 784
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 2 cut(s) 590, 1084
Lsp1109I GCAGC 5 cut(s) 344, 469, 532, 554, 947
LweI GCATC 1 cut(s) 859
MaeI CTAG 3 cut(s) 549, 711, 1135
MaeIII GTNAC 3 cut(s) 25, 221, 724
MalI GATC 2 cut(s) 124, 786
MboI GATC 2 cut(s) 122, 784
MboII GAAGA 6 cut(s) 87, 125, 207, 398, 743, 779
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 3 cut(s) 252, 751, 765
MluCI AATT 6 cut(s) 304, 489, 581, 780, 1020, 1118
MlyI GAGTC 3 cut(s) 173, 721, 1123
MmeI TCCRAC 2 cut(s) 648, 997
MnlI CCTC 8 cut(s) 104, 248, 302, 344, 380, 414, 775, 925
MreI CGCCGGCG 1 cut(s) 329
MroNI GCCGGC 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 1029
MseI TTAA 4 cut(s) 653, 1047, 1112, 1122
MslI CAYNNNNRTG 1 cut(s) 855
MspA1I CMGCKG 2 cut(s) 412, 545
MspI CCGG 2 cut(s) 55, 330
MspR9I CCNGG 1 cut(s) 969
Mva1269I GAATGC 1 cut(s) 1010
MvaI CCWGG 1 cut(s) 969
MvnI CGCG 2 cut(s) 20, 52
MwoI GCNNNNNNNGC 9 cut(s) 11, 203, 339, 342, 345, 354, 551, 606, 866
NaeI GCCGGC 1 cut(s) 331
NcoI CCATGG 1 cut(s) 537
NdeII GATC 2 cut(s) 122, 784
NgoMIV GCCGGC 1 cut(s) 329
NheI GCTAGC 2 cut(s) 548, 710
NlaIII CATG 3 cut(s) 147, 541, 1041
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 221, 724
NruI TCGCGA 1 cut(s) 20
NspI RCATGY 1 cut(s) 147
PaeR7I CTCGAG 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 756
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PctI GAATGC 1 cut(s) 1010
PdiI GCCGGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 3 cut(s) 78, 497, 1097
PleI GAGTC 3 cut(s) 173, 721, 1123
PpsI GAGTC 3 cut(s) 173, 721, 1123
Psp6I CCWGG 1 cut(s) 967
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 463
PsuI RGATCY 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 545
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 2 cut(s) 566, 678
RsaNI GTAC 2 cut(s) 565, 677
RseI CAYNNNNRTG 1 cut(s) 855
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 4 cut(s) 653, 1047, 1112, 1122
Sau3AI GATC 2 cut(s) 122, 784
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 3 cut(s) 173, 721, 1123
ScrFI CCNGG 1 cut(s) 969
SduI GDGCHC 3 cut(s) 252, 751, 765
SfaNI GCATC 1 cut(s) 859
Sfr274I CTCGAG 1 cut(s) 269
SgrAI CRCCGGYG 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 855
SmlI CTYRAG 3 cut(s) 269, 293, 766
SmoI CTYRAG 3 cut(s) 269, 293, 766
Sse9I AATT 6 cut(s) 304, 489, 581, 780, 1020, 1118
SspMI CTAG 3 cut(s) 549, 711, 1135
StyD4I CCNGG 1 cut(s) 967
StyI CCWWGG 2 cut(s) 9, 537
TaaI ACNGT 1 cut(s) 945
TaqI TCGA 4 cut(s) 65, 218, 270, 906
TasI AATT 6 cut(s) 304, 489, 581, 780, 1020, 1118
TatI WGTACW 2 cut(s) 564, 676
TauI GCSGC 6 cut(s) 336, 339, 342, 345, 348, 363
TfiI GAWTC 3 cut(s) 78, 497, 1097
Tru1I TTAA 4 cut(s) 653, 1047, 1112, 1122
Tru9I TTAA 4 cut(s) 653, 1047, 1112, 1122
TseFI GTSAC 2 cut(s) 221, 724
TseI GCWGC 5 cut(s) 357, 457, 542, 545, 935
Tsp45I GTSAC 2 cut(s) 221, 724
TspDTI ATGAA 2 cut(s) 510, 634
TspGWI ACGGA 2 cut(s) 51, 87
XapI RAATTY 3 cut(s) 304, 581, 1118
XceI RCATGY 1 cut(s) 147
XhoI CTCGAG 1 cut(s) 269
XmiI GTMKAC 2 cut(s) 65, 152
XmnI GAANNNNTTC 1 cut(s) 1029
XspI CTAG 3 cut(s) 549, 711, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.