Rh2CG122700

Thiol-disulfide oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010979
Physical Location & Seq
Reverse (-)
10858322 .. 10861352
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG122700.1

Sequence Viewer

Length: 1062 bp
ATGGCTACCTTGGCGCTCCTGAGCCTAACATCTCCTTCACTCTCCTCTCCCAGATCTCTTCCTCGCTCAAATCACACCAGATTCGGTGTCCTTACTACCACTTCGGGTTGGGCTCGGAGAACTGTGCGGCTTCCCGTTCTATGCTCAGCTTCGGAGCCCAATCAAAACGCCGAATCCGAACCGGAAACGACGTCGTCTCCGCCGTCGTCTTCGAGTGATTTGACCTACAAACTATGTGCCGGGCTCGGAGGCATCGGGTTTCTCGAAACGACCTACTTGACCTTCCTCAAGCTCACGAATTCCGATGCCTTCTGCCCCACCGCCGGCGGCGGCGGCGGAAGTTGCGGCGACATCCTCAACAGTGAATACGCTGTCGTTTTTGGGGTTCCTCTTCCGTTGTTTGGAATGCTTGCATATGGGTTAGTTGCTACACTTGGTGTGCAGCTGTTGACTGCAAAGAGTTTACCTTTTGGAATTGGGAAATCTGATGCTAGCTTGGTTTTACTTGGGACTACGACCTCCATGGCAGCTGCTAGTGCTTGTTTTTTGTACATTCTTAGCACACAGTTTTCGGGAACTTCATGTTCGTATTGTTTGTTATCGGCTTTCCTCTCCTTCAGCTTATTTTTCATCACTTTAAAGGATTTTGGGTTCGAAAAAGTACAAAAAGAGGCGGGTTTATTGGTGTGTATAGCTGTCTTGGTGGCTGTGACTCTGAACAGGTCATATAGTGCACCTGTATCCTCAAGCCCATCTGATGTTGATCTTCCATACTTTACAACTGAGATAACAACACCATCAAGTCCGTTTGCTATATCTCTTGCAAAGCATCTAAATGCTATAGGTGCTAAAATGTATGGCGCTTTTTGGTGTTCACATTGTGTTGAACAAAAACAGATGTTTGGGCGTGAAGCAGCGAAGGAATTGAACTATGTTGAGTGCTTCCCTGGTGGATTTAGAAAGGGAACTATAATGGCAAAGGCATGTATTGATGCCAAACTTGAAGGTTTTCCTACTTGGGTCATCAATGGACAGGTGATAAATCTCATCATAGATTCTTGA

Protein Analysis

353

Amino Acids

37.34

Weight (kDa)

6.8

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VKOR PF07884 78 - 212 7.5e-25 Vitamin K epoxide reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35760 AT4G35760
fragaria_vesca FvH4_1g10920 FvH4_1g10920
malus_domestica MD02G1122300.v1.1 MD15G1236200.v1.1
prunus_persica Prupe.7G176300_v2.0.a1
pyrus_communis pycom02g09520 pycom15g21020
rosa_chinensis RchiOBHm_Chr2g0098181
rosa_laevigata RLG00000016769
rosa_multiflora Rmu_sc0009178.1_g000009 Rmu_sc0023861.1_g000003
rosa_roxburghii Rroxscaffold_2G00144220
rosa_rugosa Rorug02G0070800
rosa_samantha Rh2AG118100 Rh2BG121100 Rh2CG122700 Rh2DG122600
rosa_wichuraiana Rw2G009240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 194
AciI CCGC 9 cut(s) 127, 200, 321, 327, 330, 333, 336, 345, 674
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 601
AcyI GRCGYC 1 cut(s) 191
AdeI CACNNNGTG 2 cut(s) 437, 881
AfaI GTAC 2 cut(s) 551, 663
AfiI CCNNNNNNNGG 2 cut(s) 323, 401
AgsI TTSAA 3 cut(s) 887, 928, 1004
AjnI CCWGG 1 cut(s) 946
AloI GAACNNNNNNTCC 2 cut(s) 635, 667
AluBI AGCT 7 cut(s) 149, 292, 445, 495, 530, 621, 695
AluI AGCT 7 cut(s) 149, 292, 445, 495, 530, 621, 695
Alw21I GWGCWC 1 cut(s) 736
Alw26I GTCTC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 732
ApaLI GTGCAC 1 cut(s) 732
ApeKI GCWGC 4 cut(s) 442, 527, 530, 914
ApoI RAATTY 1 cut(s) 298
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 2 cut(s) 16, 863
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 1048
AsuII TTCGAA 1 cut(s) 654
AsuNHI GCTAGC 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 736
BanII GRGCYC 3 cut(s) 115, 159, 246
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 736
BbvI GCAGC 4 cut(s) 454, 517, 539, 926
BccI CCATC 2 cut(s) 760, 805
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 948
BciVI GTATCC 1 cut(s) 751
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 492, 534
BfmI CTRYAG 1 cut(s) 840
BfoI RGCGCY 2 cut(s) 17, 864
BfuI GTATCC 1 cut(s) 751
BglII AGATCT 1 cut(s) 53
BisI GCNGC 9 cut(s) 128, 328, 331, 334, 346, 443, 528, 531, 915
BlpI GCTNAGC 1 cut(s) 145
BlsI GCNGC 9 cut(s) 129, 329, 332, 335, 347, 444, 529, 532, 916
Bme1390I CCNGG 2 cut(s) 241, 948
BmiI GGNNCC 2 cut(s) 156, 387
BmrFI CCNGG 2 cut(s) 241, 948
BmsI GCATC 5 cut(s) 261, 295, 478, 838, 982
BmtI GCTAGC 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 20
Bpu1102I GCTNAGC 1 cut(s) 145
Bpu14I TTCGAA 1 cut(s) 654
BpuEI CTTGAG 2 cut(s) 272, 730
BpuMI CCSGG 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 762
BsaHI GRCGYC 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 9, 522, 946
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 401
Bse118I RCCGGY 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 1 cut(s) 948
BseDI CCNNGG 3 cut(s) 9, 522, 946
BseGI GGATG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 2 cut(s) 323, 401
BseMII CTCAG 3 cut(s) 11, 159, 774
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 1 cut(s) 736
BseXI GCAGC 4 cut(s) 454, 517, 539, 926
BsgI GTGCAG 1 cut(s) 461
BsiHKAI GWGCWC 1 cut(s) 736
BsiSI CCGG 3 cut(s) 182, 240, 324
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 2 cut(s) 323, 401
BsmAI GTCTC 1 cut(s) 201
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 523
BsmI GAATGC 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 654
Bsp1286I GDGCHC 4 cut(s) 115, 159, 246, 736
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 2 cut(s) 53, 763
Bsp1720I GCTNAGC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 9 cut(s) 127, 200, 321, 327, 330, 333, 336, 345, 674
BspCNI CTCAG 3 cut(s) 12, 158, 775
BspLI GGNNCC 2 cut(s) 156, 387
BspOI GCTAGC 1 cut(s) 495
BspT104I TTCGAA 1 cut(s) 654
BsrFI RCCGGY 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 549
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 9, 522, 946
BssMI GATC 2 cut(s) 53, 763
BssNI GRCGYC 1 cut(s) 191
BssT1I CCWWGG 2 cut(s) 9, 522
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 3 cut(s) 124, 362, 567
Bst6I CTCTTC 2 cut(s) 63, 396
BstACI GRCGYC 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 654
BstC8I GCNNGC 3 cut(s) 325, 411, 493
BstDEI CTNAG 4 cut(s) 20, 145, 557, 783
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 351
BstH2I RGCGCY 2 cut(s) 17, 864
BstHHI GCGC 2 cut(s) 16, 863
BstKTI GATC 2 cut(s) 56, 766
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 53, 763
BstMWI GCNNNNNNNGC 5 cut(s) 11, 333, 342, 536, 845
BstNI CCWGG 1 cut(s) 948
BstNSI RCATGY 1 cut(s) 987
BstSCI CCNGG 2 cut(s) 239, 946
BstSFI CTRYAG 1 cut(s) 840
BstSLI GKGCMC 1 cut(s) 736
BstV1I GCAGC 4 cut(s) 454, 517, 539, 926
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuI GTATCC 1 cut(s) 751
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 3 cut(s) 325, 411, 493
CfoI GCGC 2 cut(s) 16, 863
Cfr10I RCCGGY 1 cut(s) 323
Csp6I GTAC 2 cut(s) 550, 662
CviAII CATG 3 cut(s) 523, 582, 984
CviQI GTAC 2 cut(s) 550, 662
DdeI CTNAG 4 cut(s) 20, 145, 557, 783
DpnI GATC 2 cut(s) 55, 765
DpnII GATC 2 cut(s) 53, 763
DraI TTTAAA 1 cut(s) 639
DraIII CACNNNGTG 2 cut(s) 437, 881
Eam1104I CTCTTC 2 cut(s) 63, 396
EarI CTCTTC 2 cut(s) 63, 396
EciI GGCGGA 2 cut(s) 189, 351
Eco130I CCWWGG 2 cut(s) 9, 522
Eco24I GRGCYC 3 cut(s) 115, 159, 246
Eco57I CTGAAG 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 946
EcoT14I CCWWGG 2 cut(s) 9, 522
EcoT38I GRGCYC 3 cut(s) 115, 159, 246
ErhI CCWWGG 2 cut(s) 9, 522
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 3 cut(s) 526, 585, 987
FaqI GGGAC 1 cut(s) 523
FatI CATG 3 cut(s) 522, 581, 983
FauI CCCGC 1 cut(s) 667
FauNDI CATATG 1 cut(s) 415
Fnu4HI GCNGC 9 cut(s) 128, 328, 331, 334, 346, 443, 528, 531, 915
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 3 cut(s) 115, 159, 246
Fsp4HI GCNGC 9 cut(s) 128, 328, 331, 334, 346, 443, 528, 531, 915
FspBI CTAG 2 cut(s) 492, 534
GlaI GCGC 2 cut(s) 15, 862
GluI GCNGC 9 cut(s) 128, 328, 331, 334, 346, 443, 528, 531, 915
HaeII RGCGCY 2 cut(s) 17, 864
HapII CCGG 3 cut(s) 182, 240, 324
HhaI GCGC 2 cut(s) 16, 863
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 3 cut(s) 526, 585, 987
Hin6I GCGC 2 cut(s) 14, 861
HinP1I GCGC 2 cut(s) 14, 861
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 4 cut(s) 81, 173, 712, 1055
HpaII CCGG 3 cut(s) 182, 240, 324
HphI GGTGA 1 cut(s) 1048
Hpy166II GTNNAC 4 cut(s) 450, 464, 734, 875
Hpy188I TCNGA 8 cut(s) 117, 154, 178, 248, 304, 487, 717, 757
Hpy188III TCNNGA 5 cut(s) 19, 263, 295, 573, 1059
Hpy8I GTNNAC 4 cut(s) 450, 464, 734, 875
Hpy99I CGWCG 3 cut(s) 193, 196, 208
HpyAV CCTTC 6 cut(s) 45, 292, 319, 625, 913, 998
HpyCH4III ACNGT 3 cut(s) 124, 362, 567
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 5 cut(s) 413, 442, 455, 734, 824
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 333, 342, 536, 845
HpyF3I CTNAG 4 cut(s) 20, 145, 557, 783
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 3 cut(s) 526, 585, 987
HspAI GCGC 2 cut(s) 14, 861
KroI GCCGGC 1 cut(s) 323
KroNI GCCGGC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 53, 763
LmnI GCTCC 2 cut(s) 21, 154
Lsp1109I GCAGC 4 cut(s) 454, 517, 539, 926
LweI GCATC 5 cut(s) 261, 295, 478, 838, 982
MaeI CTAG 2 cut(s) 492, 534
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 709
MalI GATC 2 cut(s) 55, 765
MboI GATC 2 cut(s) 53, 763
MboII GAAGA 4 cut(s) 50, 201, 383, 758
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 4 cut(s) 115, 159, 246, 736
MluCI AATT 3 cut(s) 298, 474, 923
MlyI GAGTC 1 cut(s) 706
MreI CGCCGGCG 1 cut(s) 323
MroNI GCCGGC 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 1008
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 1 cut(s) 834
MspA1I CMGCKG 2 cut(s) 445, 530
MspI CCGG 3 cut(s) 182, 240, 324
MspR9I CCNGG 2 cut(s) 241, 948
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 1 cut(s) 948
MwoI GCNNNNNNNGC 5 cut(s) 11, 333, 342, 536, 845
NaeI GCCGGC 1 cut(s) 325
NciI CCSGG 1 cut(s) 241
NcoI CCATGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 415
NdeII GATC 2 cut(s) 53, 763
NgoMIV GCCGGC 1 cut(s) 323
NheI GCTAGC 1 cut(s) 491
NlaIII CATG 3 cut(s) 526, 585, 987
NlaIV GGNNCC 2 cut(s) 156, 387
NmuCI GTSAC 1 cut(s) 709
NspI RCATGY 1 cut(s) 987
NspV TTCGAA 1 cut(s) 654
PcsI WCGNNNNNNNCGW 3 cut(s) 174, 200, 261
PctI GAATGC 1 cut(s) 411
PdiI GCCGGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 3 cut(s) 81, 173, 1055
PflFI GACNNNGTC 1 cut(s) 193
PkrI GCNGC 9 cut(s) 129, 329, 332, 335, 347, 444, 529, 532, 916
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 946
PspGI CCWGG 1 cut(s) 946
PspN4I GGNNCC 2 cut(s) 156, 387
PsuI RGATCY 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 193
PvuII CAGCTG 2 cut(s) 445, 530
RsaI GTAC 2 cut(s) 551, 663
RsaNI GTAC 2 cut(s) 550, 662
RseI CAYNNNNRTG 1 cut(s) 834
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 9 cut(s) 128, 328, 331, 334, 346, 443, 528, 531, 915
Sau3AI GATC 2 cut(s) 53, 763
SchI GAGTC 1 cut(s) 706
ScrFI CCNGG 2 cut(s) 241, 948
SduI GDGCHC 4 cut(s) 115, 159, 246, 736
SfaNI GCATC 5 cut(s) 261, 295, 478, 838, 982
SfcI CTRYAG 1 cut(s) 840
SfuI TTCGAA 1 cut(s) 654
SgrAI CRCCGGYG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 2 cut(s) 287, 745
SmoI CTYRAG 2 cut(s) 287, 745
Sse9I AATT 3 cut(s) 298, 474, 923
SsiI CCGC 9 cut(s) 127, 200, 321, 327, 330, 333, 336, 345, 674
SspMI CTAG 2 cut(s) 492, 534
StyD4I CCNGG 2 cut(s) 239, 946
StyI CCWWGG 2 cut(s) 9, 522
TaaI ACNGT 3 cut(s) 124, 362, 567
TaiI ACGT 1 cut(s) 194
TaqI TCGA 3 cut(s) 212, 264, 654
TasI AATT 3 cut(s) 298, 474, 923
TatI WGTACW 2 cut(s) 549, 661
TauI GCSGC 5 cut(s) 130, 330, 333, 336, 348
TfiI GAWTC 3 cut(s) 81, 173, 1055
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 4 cut(s) 442, 527, 530, 914
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 2 cut(s) 570, 619
TspGWI ACGGA 2 cut(s) 384, 795
TspRI CASTG 1 cut(s) 367
Tth111I GACNNNGTC 1 cut(s) 193
VneI GTGCAC 1 cut(s) 732
XapI RAATTY 1 cut(s) 298
XceI RCATGY 1 cut(s) 987
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 2 cut(s) 492, 534
ZraI GACGTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.