Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010979

Physical Location & Seq

Genomic Coordinates Reverse (-)

15056845 .. 15057697

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGACTTTGGCGTTTGTGAGCCTAACATCTCCGCCGTTCTCGTCGTTGCGCCGGTCTCCGTCGACCCACGGAAGATTCCCGCTCCTCCATAAATCTCTGAATTGTGGTCAGAGATCTCTGCTTCTTCCCATAACATGCTCTTCTACTGAACCAAATCAAAACGCCGACGACTCGGAATCCGAAACGGCGTCGTTGACTCCGTCTTCTTCGAGTGACTTCACCTACAAACTCTACGCAGGGCTCGGAGGCGTTGGGTTTCTCGAGACGACGTACTTGACTTATCTCAAGCTCACAAATTCCAATGCATTCTGCCTCACCGGCGGCGCTAGCGGCAGCTGCGGCGACATCCTCAGCAGCGATTACGCTGTCGTTTTTGGTGTTCCTCTTCCGCTTATCGGAATAGTTGCTTATGGGTTAGTTGCTACTCTGGTTGTGCAGCTTTTGACTGCAAAGAAGTTGCCTTTTGGAATTGATGAATCTAATGCTCGCTTAGTATTGCTTGGGACTTCAACTTCCATGGCAGCGGCTAGCGCTTGTTTTTTGTACATTCTTGGCACAAAGTTTTCAGGAGCTTCTTGCTCGTATTGCTTGTTATCCGCTTTGCTCTCTTCCACCTTGTTTTTCATTACTTTAAAGGTGAGCTTTTGGATATTGTTCTTTTCTGTTCTCTTTGATTTGATGTTAATGGCAGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003955 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016651 GO:0016655 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VKOR

Protein Analysis

234

Amino Acids

24.69

Weight (kDa)

6.69

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VKOR	PF07884	78 - 211	6e-25	Vitamin K epoxide reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35760 AT4G35760
fragaria_vesca	FvH4_1g10920 FvH4_1g10920
malus_domestica	MD02G1122300.v1.1 MD15G1236200.v1.1
prunus_persica	Prupe.7G176300_v2.0.a1
pyrus_communis	pycom02g09520 pycom15g21020
rosa_chinensis	RchiOBHm_Chr2g0098181
rosa_laevigata	RLG00000016769
rosa_multiflora	Rmu_sc0009178.1_g000009 Rmu_sc0023861.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144220
rosa_rugosa	Rorug02G0070800
rosa_samantha	Rh2AG118100 Rh2BG121100 Rh2CG122700 Rh2DG122600
rosa_wichuraiana	Rw2G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	8 cut(s)	35, 83, 324, 333, 342, 392, 527, 600
AcsI	RAATTY	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	2 cut(s)	275, 548
AfeI	AGCGCT	1 cut(s)	535
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	513
AluBI	AGCT	5 cut(s)	292, 339, 442, 575, 645
AluI	AGCT	5 cut(s)	292, 339, 442, 575, 645
Alw26I	GTCTC	2 cut(s)	63, 260
Ama87I	CYCGRG	1 cut(s)	263
Aor51HI	AGCGCT	1 cut(s)	535
ApeKI	GCWGC	5 cut(s)	336, 339, 357, 439, 524
ApoI	RAATTY	1 cut(s)	298
AspLEI	GCGC	3 cut(s)	54, 329, 536
AsuHPI	GGTGA	3 cut(s)	214, 310, 652
AsuNHI	GCTAGC	2 cut(s)	329, 530
AvaI	CYCGRG	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	198
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	5 cut(s)	326, 348, 369, 451, 536
BceAI	ACGGC	2 cut(s)	22, 204
BcoDI	GTCTC	2 cut(s)	63, 260
BfaI	CTAG	3 cut(s)	330, 531, 700
BfoI	RGCGCY	2 cut(s)	330, 537
BglI	GCCNNNNNGGC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	9 cut(s)	325, 334, 337, 340, 343, 358, 440, 525, 528
BlsI	GCNGC	9 cut(s)	326, 335, 338, 341, 344, 359, 441, 526, 529
BmeT110I	CYCGRG	1 cut(s)	263
BmtI	GCTAGC	2 cut(s)	333, 534
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	70, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse118I	RCCGGY	2 cut(s)	54, 320
BseDI	CCNNGG	2 cut(s)	70, 519
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	5 cut(s)	326, 348, 369, 451, 536
BsgI	GTGCAG	1 cut(s)	458
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	55, 321
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	2 cut(s)	63, 260
BsmBI	CGTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	116, 696
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	8 cut(s)	35, 83, 324, 333, 342, 392, 527, 600
BspCNI	CTCAG	1 cut(s)	366
BspOI	GCTAGC	2 cut(s)	333, 534
BspQI	GCTCTTC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	85
BsrFI	RCCGGY	2 cut(s)	54, 320
BsrGI	TGTACA	1 cut(s)	546
BssAI	RCCGGY	2 cut(s)	54, 320
BssECI	CCNNGG	2 cut(s)	70, 519
BssMI	GATC	2 cut(s)	116, 696
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	519
Bst6I	CTCTTC	3 cut(s)	148, 393, 616
BstACI	GRCGYC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	331, 490, 532
BstDEI	CTNAG	2 cut(s)	353, 493
BstDSI	CCRYGG	2 cut(s)	70, 519
BstF5I	GGATG	1 cut(s)	348
BstH2I	RGCGCY	2 cut(s)	330, 537
BstHHI	GCGC	3 cut(s)	54, 329, 536
BstKTI	GATC	2 cut(s)	119, 699
BstMAI	GTCTC	2 cut(s)	63, 260
BstMBI	GATC	2 cut(s)	116, 696
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 321, 330, 333, 339, 342, 533, 588
BstNSI	RCATGY	1 cut(s)	141
BstV1I	GCAGC	5 cut(s)	326, 348, 369, 451, 536
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BtgI	CCRYGG	2 cut(s)	70, 519
BtsCI	GGATG	1 cut(s)	348
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	3 cut(s)	331, 490, 532
CfoI	GCGC	3 cut(s)	54, 329, 536
Cfr10I	RCCGGY	2 cut(s)	54, 320
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	274, 547
CviAII	CATG	2 cut(s)	138, 520
CviJI	RGCY	8 cut(s)	24, 244, 292, 339, 442, 530, 575, 645
CviKI_1	RGCY	8 cut(s)	24, 244, 292, 339, 442, 530, 575, 645
CviQI	GTAC	2 cut(s)	274, 547
DdeI	CTNAG	2 cut(s)	353, 493
DpnI	GATC	2 cut(s)	118, 698
DpnII	GATC	2 cut(s)	116, 696
DraI	TTTAAA	1 cut(s)	636
Eam1104I	CTCTTC	3 cut(s)	148, 393, 616
EarI	CTCTTC	3 cut(s)	148, 393, 616
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	63
Eco47III	AGCGCT	1 cut(s)	535
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	519
EcoT22I	ATGCAT	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	2 cut(s)	141, 523
FaiI	YATR	5 cut(s)	93, 134, 139, 414, 521
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	2 cut(s)	137, 519
FauI	CCCGC	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	9 cut(s)	325, 334, 337, 340, 343, 358, 440, 525, 528
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	9 cut(s)	325, 334, 337, 340, 343, 358, 440, 525, 528
FspBI	CTAG	3 cut(s)	330, 531, 700
GlaI	GCGC	3 cut(s)	53, 328, 535
GluI	GCNGC	9 cut(s)	325, 334, 337, 340, 343, 358, 440, 525, 528
HaeII	RGCGCY	2 cut(s)	330, 537
HapII	CCGG	2 cut(s)	55, 321
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	3 cut(s)	54, 329, 536
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	141, 523
Hin6I	GCGC	3 cut(s)	52, 327, 534
HinP1I	GCGC	3 cut(s)	52, 327, 534
HincII	GTYRAC	2 cut(s)	66, 198
HindII	GTYRAC	2 cut(s)	66, 198
HinfI	GANTC	5 cut(s)	78, 173, 179, 199, 479
HpaII	CCGG	2 cut(s)	55, 321
HphI	GGTGA	3 cut(s)	214, 310, 652
Hpy166II	GTNNAC	2 cut(s)	66, 198
Hpy188I	TCNGA	6 cut(s)	102, 114, 178, 184, 248, 401
Hpy188III	TCNNGA	3 cut(s)	263, 265, 570
Hpy8I	GTNNAC	2 cut(s)	66, 198
Hpy99I	CGWCG	5 cut(s)	49, 67, 173, 196, 274
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	3 cut(s)	308, 439, 452
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 321, 330, 333, 339, 342, 533, 588
HpyF3I	CTNAG	2 cut(s)	353, 493
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	141, 523
HspAI	GCGC	3 cut(s)	52, 327, 534
Kzo9I	GATC	2 cut(s)	116, 696
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	90, 572
LpnPI	CCDG	5 cut(s)	68, 225, 334, 416, 555
Lsp1109I	GCAGC	5 cut(s)	326, 348, 369, 451, 536
MaeI	CTAG	3 cut(s)	330, 531, 700
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	118, 698
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	2 cut(s)	116, 696
MboII	GAAGA	7 cut(s)	87, 119, 135, 198, 201, 380, 603
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	103, 298, 471
MlyI	GAGTC	2 cut(s)	167, 193
MnlI	CCTC	5 cut(s)	98, 242, 326, 362, 396
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	2 cut(s)	635, 686
MspA1I	CMGCKG	2 cut(s)	339, 527
MspI	CCGG	2 cut(s)	55, 321
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	8 cut(s)	11, 321, 330, 333, 339, 342, 533, 588
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	2 cut(s)	116, 696
NheI	GCTAGC	2 cut(s)	329, 530
NlaIII	CATG	2 cut(s)	141, 523
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	3 cut(s)	78, 179, 479
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	9 cut(s)	326, 335, 338, 341, 344, 359, 441, 526, 529
PleI	GAGTC	2 cut(s)	167, 193
PpsI	GAGTC	2 cut(s)	167, 193
PsuI	RGATCY	1 cut(s)	116
PsyI	GACNNNGTC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	339
RsaI	GTAC	2 cut(s)	275, 548
RsaNI	GTAC	2 cut(s)	274, 547
SalI	GTCGAC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	635, 686
SatI	GCNGC	9 cut(s)	325, 334, 337, 340, 343, 358, 440, 525, 528
Sau3AI	GATC	2 cut(s)	116, 696
SchI	GAGTC	2 cut(s)	167, 193
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	9 cut(s)	227, 275, 294, 341, 444, 577, 620, 642, 647
Sfr274I	CTCGAG	1 cut(s)	263
SgrAI	CRCCGGYG	1 cut(s)	320
SlaI	CTCGAG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	263, 287
SmoI	CTYRAG	2 cut(s)	263, 287
Sse9I	AATT	3 cut(s)	103, 298, 471
SsiI	CCGC	8 cut(s)	35, 83, 324, 333, 342, 392, 527, 600
SspMI	CTAG	3 cut(s)	330, 531, 700
StyI	CCWWGG	1 cut(s)	519
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	3 cut(s)	65, 212, 264
TasI	AATT	3 cut(s)	103, 298, 471
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	4 cut(s)	327, 336, 345, 530
TfiI	GAWTC	3 cut(s)	78, 179, 479
Tru1I	TTAA	2 cut(s)	635, 686
Tru9I	TTAA	2 cut(s)	635, 686
TscAI	CASTG	1 cut(s)	699
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	5 cut(s)	336, 339, 357, 439, 524
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	492, 616
TspGWI	ACGGA	3 cut(s)	51, 87, 192
TspRI	CASTG	1 cut(s)	699
Tth111I	GACNNNGTC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	3 cut(s)	330, 531, 700
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.