Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010979

Physical Location & Seq

Genomic Coordinates Reverse (-)

9861380 .. 9863893

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCTACCTTGGCGCTCCTGAGCCTAACATCTCCTTCACTCTCCTCTCCCAGATCTCTTCCTCGCTCAAATCACACCAGATTCGGTGTCCTTACTACCACTTCGGGTTGGACTCGGAGAACTGTGCGGCTTCCCGTTACATGCTCAGCTTCGGAGCCCAATCAAAACGCCGAATCCGAACCGGAAACGACGTCGTCTCCGCCGTCGTCTTCGAGTGACTTGACCTACAAACTATGTGCCGGGCTCGGAGGCATCGGGTTTCTCGAAACGACCTACTTGACGTTCCTCAAGCTCACGAATTCCGATGCCTTCTGCCCCACCGCCGGCGGCGGCGGCGGCGGCGGCGGAAGCGGAAGTTGCGGCGACATCCTCAACAGTGAATTCGCCGTCGTTTTTGGGGTTCCTCTTCCGTTGTTTGGAATGCTTGCATATGGATTAGTTGCTACACTTGGTGTGCAGCTGTTGACTTCAAAGAGTTTACCTTTTGAAATTGGGAAATCTGATGCTAGCTTGGTTTTACTTGGGACTACAACCTCCATGGCAGCTGCTAGTGCTTGTTTCTTGTACATTCTTAGCACACAGTTTTCGGGAACTGCATGTTCGTATTGTTTGTTATCGGCTTTCCTCTCCTTCAGCTTATTTTTCATCACTTTAAAGGATTTTGGGTTCGAAAAAGTACAAAAAGAGGCGGGTTTATTGGTGTGTATAGCTGTCTTGGTGGCTGTGACTCTGAACAGGTCATATAGTGCACCTGTATCCTCAAGCCCATCTGATGTTGATCTTCCATACTTTACAACTGAGATAACAACACCATCAAGTCCGTTTGCTATATCTCTTGCAAAGCATCTAAATGCTATAGGTGCTAAAATGTATGGCGCTTTTTGGTGTTCACATTGTGTTGAACAAAAACAGATGTTTGGACGTGAAGCAGCGAAGGAATTGAACTATGTTGAGTGCTTCCCTGATGGATTTAGAAAGGGAACTATAATGGCAAAGGCATGTATTGATGCCAAACTTGAAGGTTTTCCTACTTGGGTCATCAATGGACGGGTTTTGAGTGGAGAAAAAGATTTGCTAGAGCTTGCAGAGGCATCTGGGTTTGAGTTGAACGAATTTAGTCAGACCCTCATAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003955 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016651 GO:0016655 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VKOR

Protein Analysis

379

Amino Acids

40.02

Weight (kDa)

5.28

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VKOR	PF07884	78 - 217	5.2e-24	Vitamin K epoxide reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35760 AT4G35760
fragaria_vesca	FvH4_1g10920 FvH4_1g10920
malus_domestica	MD02G1122300.v1.1 MD15G1236200.v1.1
prunus_persica	Prupe.7G176300_v2.0.a1
pyrus_communis	pycom02g09520 pycom15g21020
rosa_chinensis	RchiOBHm_Chr2g0098181
rosa_laevigata	RLG00000016769
rosa_multiflora	Rmu_sc0009178.1_g000009 Rmu_sc0023861.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144220
rosa_rugosa	Rorug02G0070800
rosa_samantha	Rh2AG118100 Rh2BG121100 Rh2CG122700 Rh2DG122600
rosa_wichuraiana	Rw2G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AcsI	RAATTY	3 cut(s)	298, 380, 1112
AcuI	CTGAAG	1 cut(s)	616
AcyI	GRCGYC	1 cut(s)	191
AdeI	CACNNNGTG	2 cut(s)	452, 896
AfaI	GTAC	2 cut(s)	566, 678
AfiI	CCNNNNNNNGG	2 cut(s)	323, 416
AgsI	TTSAA	6 cut(s)	471, 488, 902, 943, 1019, 1108
AjiI	CACGTC	1 cut(s)	923
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	8 cut(s)	149, 292, 460, 510, 545, 636, 710, 1081
AluI	AGCT	8 cut(s)	149, 292, 460, 510, 545, 636, 710, 1081
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	747
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	4 cut(s)	457, 542, 545, 929
ApoI	RAATTY	3 cut(s)	298, 380, 1112
Asp700I	GAANNNNTTC	1 cut(s)	1023
AspLEI	GCGC	2 cut(s)	16, 878
AsuC2I	CCSGG	1 cut(s)	241
AsuII	TTCGAA	1 cut(s)	669
AsuNHI	GCTAGC	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	159, 246
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	4 cut(s)	469, 532, 554, 941
BccI	CCATC	3 cut(s)	775, 820, 959
BceAI	ACGGC	2 cut(s)	187, 371
BciVI	GTATCC	1 cut(s)	766
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	3 cut(s)	507, 549, 1076
BfmI	CTRYAG	1 cut(s)	855
BfoI	RGCGCY	2 cut(s)	17, 879
BfuI	GTATCC	1 cut(s)	766
BglII	AGATCT	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	241
BmgBI	CACGTC	1 cut(s)	923
BmiI	GGNNCC	2 cut(s)	156, 402
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	6 cut(s)	261, 295, 493, 853, 997, 1100
BmtI	GCTAGC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	669
BpuEI	CTTGAG	2 cut(s)	272, 745
BpuMI	CCSGG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	9, 537
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 416
Bse118I	RCCGGY	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	9, 537
BseGI	GGATG	1 cut(s)	366
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	323, 416
BseMII	CTCAG	3 cut(s)	11, 159, 789
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	4 cut(s)	469, 532, 554, 941
BsgI	GTGCAG	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	751
BsiSI	CCGG	3 cut(s)	182, 240, 324
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	2 cut(s)	323, 416
BsmAI	GTCTC	1 cut(s)	201
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	426
Bsp119I	TTCGAA	1 cut(s)	669
Bsp1286I	GDGCHC	3 cut(s)	159, 246, 751
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	2 cut(s)	53, 778
Bsp1720I	GCTNAGC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	537
BspCNI	CTCAG	3 cut(s)	12, 158, 790
BspLI	GGNNCC	2 cut(s)	156, 402
BspOI	GCTAGC	1 cut(s)	510
BspT104I	TTCGAA	1 cut(s)	669
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	9, 537
BssMI	GATC	2 cut(s)	53, 778
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	9, 537
Bst4CI	ACNGT	3 cut(s)	124, 377, 582
Bst6I	CTCTTC	2 cut(s)	63, 411
BstACI	GRCGYC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	564
BstBI	TTCGAA	1 cut(s)	669
BstC8I	GCNNGC	4 cut(s)	325, 426, 508, 1083
BstDEI	CTNAG	4 cut(s)	20, 145, 572, 798
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	366
BstH2I	RGCGCY	2 cut(s)	17, 879
BstHHI	GCGC	2 cut(s)	16, 878
BstKTI	GATC	2 cut(s)	56, 781
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	53, 778
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 333, 336, 339, 342, 348, 357, 551, 860
BstNSI	RCATGY	3 cut(s)	144, 600, 1002
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	855
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	4 cut(s)	469, 532, 554, 941
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	766
BtgI	CCRYGG	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	923
BtsCI	GGATG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	4 cut(s)	325, 426, 508, 1083
CfoI	GCGC	2 cut(s)	16, 878
Cfr10I	RCCGGY	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	565, 677
CviAII	CATG	4 cut(s)	141, 538, 597, 999
CviQI	GTAC	2 cut(s)	565, 677
DdeI	CTNAG	4 cut(s)	20, 145, 572, 798
DpnI	GATC	2 cut(s)	55, 780
DpnII	GATC	2 cut(s)	53, 778
DraI	TTTAAA	1 cut(s)	654
DraIII	CACNNNGTG	2 cut(s)	452, 896
Eam1104I	CTCTTC	2 cut(s)	63, 411
EarI	CTCTTC	2 cut(s)	63, 411
EciI	GGCGGA	2 cut(s)	189, 360
Eco130I	CCWWGG	2 cut(s)	9, 537
Eco24I	GRGCYC	2 cut(s)	159, 246
Eco57I	CTGAAG	1 cut(s)	616
EcoRI	GAATTC	2 cut(s)	298, 380
EcoT14I	CCWWGG	2 cut(s)	9, 537
EcoT38I	GRGCYC	2 cut(s)	159, 246
ErhI	CCWWGG	2 cut(s)	9, 537
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	4 cut(s)	144, 541, 600, 1002
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	4 cut(s)	140, 537, 596, 998
FauI	CCCGC	1 cut(s)	682
FauNDI	CATATG	1 cut(s)	430
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	2 cut(s)	159, 246
FspBI	CTAG	3 cut(s)	507, 549, 1076
GlaI	GCGC	2 cut(s)	15, 877
HaeII	RGCGCY	2 cut(s)	17, 879
HapII	CCGG	3 cut(s)	182, 240, 324
HhaI	GCGC	2 cut(s)	16, 878
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	144, 541, 600, 1002
Hin6I	GCGC	2 cut(s)	14, 876
HinP1I	GCGC	2 cut(s)	14, 876
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	4 cut(s)	81, 112, 173, 727
HpaII	CCGG	3 cut(s)	182, 240, 324
Hpy166II	GTNNAC	4 cut(s)	465, 479, 749, 890
Hpy188I	TCNGA	9 cut(s)	117, 154, 178, 248, 304, 502, 732, 772, 1122
Hpy188III	TCNNGA	4 cut(s)	19, 263, 295, 588
Hpy8I	GTNNAC	4 cut(s)	465, 479, 749, 890
Hpy99I	CGWCG	4 cut(s)	193, 196, 208, 392
HpyAV	CCTTC	5 cut(s)	45, 319, 640, 928, 1013
HpyCH4III	ACNGT	3 cut(s)	124, 377, 582
HpyCH4IV	ACGT	3 cut(s)	191, 281, 922
HpyCH4V	TGCA	6 cut(s)	428, 457, 596, 749, 839, 1085
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 333, 336, 339, 342, 348, 357, 551, 860
HpyF3I	CTNAG	4 cut(s)	20, 145, 572, 798
HpySE526I	ACGT	3 cut(s)	191, 281, 922
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	4 cut(s)	144, 541, 600, 1002
HspAI	GCGC	2 cut(s)	14, 876
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	53, 778
LmnI	GCTCC	2 cut(s)	21, 154
Lsp1109I	GCAGC	4 cut(s)	469, 532, 554, 941
LweI	GCATC	6 cut(s)	261, 295, 493, 853, 997, 1100
MaeI	CTAG	3 cut(s)	507, 549, 1076
MaeII	ACGT	3 cut(s)	191, 281, 922
MaeIII	GTNAC	3 cut(s)	136, 215, 724
MalI	GATC	2 cut(s)	55, 780
MboI	GATC	2 cut(s)	53, 778
MboII	GAAGA	4 cut(s)	50, 201, 398, 773
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	3 cut(s)	159, 246, 751
MluCI	AATT	5 cut(s)	298, 380, 489, 938, 1112
MlyI	GAGTC	2 cut(s)	106, 721
MmeI	TCCRAC	1 cut(s)	89
MreI	CGCCGGCG	1 cut(s)	323
MroNI	GCCGGC	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	1023
MseI	TTAA	1 cut(s)	653
MslI	CAYNNNNRTG	1 cut(s)	849
MspA1I	CMGCKG	2 cut(s)	460, 545
MspI	CCGG	3 cut(s)	182, 240, 324
MspR9I	CCNGG	1 cut(s)	241
Mva1269I	GAATGC	1 cut(s)	426
MwoI	GCNNNNNNNGC	9 cut(s)	11, 333, 336, 339, 342, 348, 357, 551, 860
NaeI	GCCGGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	537
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	2 cut(s)	53, 778
NgoMIV	GCCGGC	1 cut(s)	323
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	4 cut(s)	144, 541, 600, 1002
NlaIV	GGNNCC	2 cut(s)	156, 402
NmuCI	GTSAC	2 cut(s)	215, 724
NspI	RCATGY	3 cut(s)	144, 600, 1002
NspV	TTCGAA	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 200, 261
PctI	GAATGC	1 cut(s)	426
PdiI	GCCGGC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	1023
PfeI	GAWTC	2 cut(s)	81, 173
PflFI	GACNNNGTC	1 cut(s)	193
PleI	GAGTC	2 cut(s)	106, 721
PpsI	GAGTC	2 cut(s)	106, 721
PspN4I	GGNNCC	2 cut(s)	156, 402
PsuI	RGATCY	1 cut(s)	53
PsyI	GACNNNGTC	1 cut(s)	193
PvuII	CAGCTG	2 cut(s)	460, 545
RsaI	GTAC	2 cut(s)	566, 678
RsaNI	GTAC	2 cut(s)	565, 677
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	1 cut(s)	653
Sau3AI	GATC	2 cut(s)	53, 778
SchI	GAGTC	2 cut(s)	106, 721
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	3 cut(s)	159, 246, 751
SfaNI	GCATC	6 cut(s)	261, 295, 493, 853, 997, 1100
SfcI	CTRYAG	1 cut(s)	855
SfuI	TTCGAA	1 cut(s)	669
SgrAI	CRCCGGYG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	2 cut(s)	287, 760
SmoI	CTYRAG	2 cut(s)	287, 760
Sse9I	AATT	5 cut(s)	298, 380, 489, 938, 1112
SspMI	CTAG	3 cut(s)	507, 549, 1076
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	2 cut(s)	9, 537
TaaI	ACNGT	3 cut(s)	124, 377, 582
TaiI	ACGT	3 cut(s)	194, 284, 925
TaqI	TCGA	3 cut(s)	212, 264, 669
TasI	AATT	5 cut(s)	298, 380, 489, 938, 1112
TatI	WGTACW	2 cut(s)	564, 676
TauI	GCSGC	8 cut(s)	130, 330, 333, 336, 339, 342, 345, 363
TfiI	GAWTC	2 cut(s)	81, 173
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	215, 724
TseI	GCWGC	4 cut(s)	457, 542, 545, 929
Tsp45I	GTSAC	2 cut(s)	215, 724
TspDTI	ATGAA	1 cut(s)	634
TspGWI	ACGGA	2 cut(s)	399, 810
TspRI	CASTG	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	193
VneI	GTGCAC	1 cut(s)	747
XapI	RAATTY	3 cut(s)	298, 380, 1112
XceI	RCATGY	3 cut(s)	144, 600, 1002
XmnI	GAANNNNTTC	1 cut(s)	1023
XspI	CTAG	3 cut(s)	507, 549, 1076
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.