FvH4_1g11351

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014636
Physical Location & Seq
Forward (+)
6200137 .. 6201285
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11351.t1

Sequence Viewer

Length: 876 bp
ATGAAACCTAACAAATTTAGGGACACTCAAGTTACAGAGCTAAGTGACTGGTATATCGATTCATACTATGATTTGAAGCATGATGAGTTTGATGATGTAGAGTTTGCTGAAAATGTTGCAGAGTCAAATGCTGTCCCAGAATTTGAAGAAATGGGATATGCAGGTTATTGTTCAGATGAGATTTGTAATTCAGATGAGTTGGAGAGCTTAGTTGGCAGTGAGACTGAAGAAGATGAGGAAGGGAACCCAATCAAGATGCTTACAAGGTTGGGTAATATGAAACTCTACCCTTATATTACATCTGTTAGAATTAAAAATCCAAGTTTTAGGCTAGAGCTTTTATTTCCTAATGTTGAGCAACTAAGAGAAGCTGTGAGGGAGTGTGCAATTAGGAATCAAATAGGCATGTGGTTTGAGAAAAATACCAAGAAGAAGATGCAGATGAGATGTCAATGCAGGAAGTGCTTCAAGTTGGATGAGAAGCTGAAGATAATATTTCTTGTCTTGCGAGCATCAACTGATGCATTTTACGTTATAGACATCCTTCTTCATATAGTTACTAGACCTGCGATGTCCCACGCATACGATGCCTTAGGGAAAACACCACAAACGGTGGTCGACGAGGAAGTTGCTGATCTGAATGGAGGAAGGAATTCCAATATAGTTAATAGAACTTGGAGGTCTTTTGTCGCAGTTGACATACTAGCCGTCGCACCCTTTCCATATATACTCTTCGCATCCCATGGGATGTTTCAACAGTTTTCACTCGCCAACACTTTCATTTTGATTACTTACGGACCACGGATTTATCGCATCTATCTAGTTTGCGAGCAACTTAAGGAGGATGCCAGCATAAAGACTGTTCTTTTGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase Pkinase_Tyr cNMP_binding

Protein Analysis

292

Amino Acids

33.62

Weight (kDa)

5.01

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 110 - 155 1.1e-07 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 152, 574
AccI GTMKAC 1 cut(s) 618
AcsI RAATTY 3 cut(s) 14, 140, 652
AcuI CTGAAG 2 cut(s) 246, 506
AflII CTTAAG 1 cut(s) 836
AgsI TTSAA 4 cut(s) 76, 146, 469, 755
AluBI AGCT 5 cut(s) 40, 207, 337, 371, 484
AluI AGCT 5 cut(s) 40, 207, 337, 371, 484
Alw26I GTCTC 1 cut(s) 215
ApoI RAATTY 3 cut(s) 14, 140, 652
ArsI GACNNNNNNTTYG 1 cut(s) 850
Asp700I GAANNNNTTC 2 cut(s) 464, 652
AspS9I GGNCC 1 cut(s) 797
AvaII GGWCC 1 cut(s) 797
AxyI CCTNAGG 1 cut(s) 592
BceAI ACGGC 1 cut(s) 692
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 4 cut(s) 332, 561, 704, 821
BfrI CTTAAG 1 cut(s) 836
BfuAI ACCTGC 2 cut(s) 152, 574
Bme18I GGWCC 1 cut(s) 797
BmgT120I GGNCC 1 cut(s) 797
BmiI GGNNCC 1 cut(s) 245
BmsI GCATC 8 cut(s) 246, 426, 511, 521, 577, 746, 822, 835
BpuEI CTTGAG 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 742, 800
Bse1I ACTGG 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 592
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 742, 800
BseGI GGATG 5 cut(s) 481, 540, 737, 753, 850
BseNI ACTGG 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 57
BslFI GGGAC 3 cut(s) 35, 119, 559
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 3 cut(s) 35, 119, 559
Bsp143I GATC 1 cut(s) 634
Bsp19I CCATGG 1 cut(s) 742
BspDI ATCGAT 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 245
BspMI ACCTGC 2 cut(s) 152, 574
BspTI CTTAAG 1 cut(s) 836
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 742, 800
BssMI GATC 1 cut(s) 634
BssT1I CCWWGG 1 cut(s) 742
Bst4CI ACNGT 3 cut(s) 613, 759, 862
Bst6I CTCTTC 1 cut(s) 737
BstAFI CTTAAG 1 cut(s) 836
BstAPI GCANNNNNTGC 2 cut(s) 462, 587
BstC8I GCNNGC 3 cut(s) 510, 830, 850
BstDEI CTNAG 4 cut(s) 41, 208, 362, 592
BstDSI CCRYGG 2 cut(s) 742, 800
BstF5I GGATG 5 cut(s) 481, 540, 737, 753, 850
BstKTI GATC 1 cut(s) 637
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 634
BstMWI GCNNNNNNNGC 3 cut(s) 213, 462, 587
BstNSI RCATGY 1 cut(s) 409
Bsu15I ATCGAT 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 592
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 2 cut(s) 742, 800
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 5 cut(s) 481, 540, 737, 753, 850
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
BveI ACCTGC 2 cut(s) 152, 574
Cac8I GCNNGC 3 cut(s) 510, 830, 850
Cfr13I GGNCC 1 cut(s) 797
ClaI ATCGAT 1 cut(s) 57
CviAII CATG 3 cut(s) 80, 406, 743
CviJI RGCY 8 cut(s) 40, 207, 331, 337, 371, 484, 707, 873
CviKI_1 RGCY 8 cut(s) 40, 207, 331, 337, 371, 484, 707, 873
DdeI CTNAG 4 cut(s) 41, 208, 362, 592
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 737
Eco130I CCWWGG 1 cut(s) 742
Eco47I GGWCC 1 cut(s) 797
Eco57I CTGAAG 2 cut(s) 246, 506
Eco81I CCTNAGG 1 cut(s) 592
EcoRI GAATTC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 742
EcoT22I ATGCAT 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 3 cut(s) 83, 409, 746
FaqI GGGAC 3 cut(s) 35, 119, 559
FatI CATG 3 cut(s) 79, 405, 742
FblI GTMKAC 1 cut(s) 618
FokI GGATG 5 cut(s) 488, 527, 724, 760, 857
FspBI CTAG 4 cut(s) 332, 561, 704, 821
Hin1II CATG 3 cut(s) 83, 409, 746
HincII GTYRAC 2 cut(s) 619, 697
HindII GTYRAC 2 cut(s) 619, 697
HinfI GANTC 3 cut(s) 59, 122, 394
Hpy166II GTNNAC 2 cut(s) 619, 697
Hpy188I TCNGA 3 cut(s) 175, 193, 639
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 2 cut(s) 619, 697
Hpy99I CGWCG 2 cut(s) 623, 713
HpyAV CCTTC 3 cut(s) 233, 554, 642
HpyCH4III ACNGT 3 cut(s) 613, 759, 862
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 6 cut(s) 119, 161, 386, 439, 456, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 462, 587
HpyF3I CTNAG 4 cut(s) 41, 208, 362, 592
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 3 cut(s) 83, 409, 746
Kzo9I GATC 1 cut(s) 634
LpnPI CCDG 6 cut(s) 34, 147, 150, 442, 579, 862
LweI GCATC 8 cut(s) 246, 426, 511, 521, 577, 746, 822, 835
MaeI CTAG 4 cut(s) 332, 561, 704, 821
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 31, 44, 556
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 8 cut(s) 158, 239, 242, 442, 445, 499, 539, 724
MluCI AATT 6 cut(s) 14, 140, 187, 309, 387, 652
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 180, 453
MnlI CCTC 6 cut(s) 229, 369, 616, 638, 672, 835
Mph1103I ATGCAT 1 cut(s) 526
MroXI GAANNNNTTC 2 cut(s) 464, 652
MseI TTAA 3 cut(s) 312, 666, 837
MspCI CTTAAG 1 cut(s) 836
MwoI GCNNNNNNNGC 3 cut(s) 213, 462, 587
NcoI CCATGG 1 cut(s) 742
NdeII GATC 1 cut(s) 634
NlaIII CATG 3 cut(s) 83, 409, 746
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 526
NspI RCATGY 1 cut(s) 409
PdmI GAANNNNTTC 2 cut(s) 464, 652
PfeI GAWTC 2 cut(s) 59, 394
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 797
SalI GTCGAC 1 cut(s) 617
SaqAI TTAA 3 cut(s) 312, 666, 837
Sau3AI GATC 1 cut(s) 634
Sau96I GGNCC 1 cut(s) 797
SchI GAGTC 1 cut(s) 131
SfaNI GCATC 8 cut(s) 246, 426, 511, 521, 577, 746, 822, 835
SinI GGWCC 1 cut(s) 797
SmlI CTYRAG 2 cut(s) 27, 836
SmoI CTYRAG 2 cut(s) 27, 836
Sse9I AATT 6 cut(s) 14, 140, 187, 309, 387, 652
SspI AATATT 1 cut(s) 495
SspMI CTAG 4 cut(s) 332, 561, 704, 821
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 3 cut(s) 613, 759, 862
TaiI ACGT 1 cut(s) 534
TaqI TCGA 2 cut(s) 57, 618
TasI AATT 6 cut(s) 14, 140, 187, 309, 387, 652
TfiI GAWTC 2 cut(s) 59, 394
Tru1I TTAA 3 cut(s) 312, 666, 837
Tru9I TTAA 3 cut(s) 312, 666, 837
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 5 cut(s) 17, 51, 293, 539, 769
TspGWI ACGGA 2 cut(s) 810, 817
TspRI CASTG 1 cut(s) 223
Vha464I CTTAAG 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 797
XapI RAATTY 3 cut(s) 14, 140, 652
XceI RCATGY 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 618
XmnI GAANNNNTTC 2 cut(s) 464, 652
XspI CTAG 4 cut(s) 332, 561, 704, 821
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.