Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014636

Physical Location & Seq

Genomic Coordinates Reverse (-)

7616525 .. 7618864

Gene Structure 2340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006487

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTGGAGGATCTTTATGGAGTCTGGACCTCCCCCAGAAAATTTCAGTGTACATAATTGGAAGTGGTCTAGGAGGAAGAGAGAGGCAAAGTTGGATGATCTAAAGCTCGATGATCCTGATTGGGAAAATCCACTCAATAGGTGCACAACATCAGAGAAAGAAAGAATGTTTGAAGCAGCCAACTTGCTTGGTAGCCAGTTAAATAGATCACCTTCTAGAGCTACTATAGAGATTAGTGTTCCAGAGATAATTGATCTTGAATATGAGGGTGGTTCAGATGGTAATGAGGGTGAAACAAAGGTGGGGCAGAAGGGACACAATAGGAAAAGTGGTCAAACTGAGGGGCATAAGGGGTATAGAAAGGAGAGAAAGAGAGGTAAGAAGCCTGAAAAAGAAGCTTGGGAGAAGGCTGAAAGAGAGGTTGCCGAGTTAAGAGAAAGCCAAGCTACTGTTGAGGAACAAGAAGAGGCTCAGAGATTGAGAGAAAGAGAGGCAGCTAAGCAATTAGCTAGGCATGAGGCAGAGAAGAGAGAACAAGAGGTTGCAGAGAAAAGGATAAGGGATGTTGTTGCTGTTAGGGAGAAATTGGTAGAAGAGTTGAGGGAGAGATTAGAACAGTCACTGCAAAGCAAAGAGGCTACTGCATCTGATAAGGGAAAAAGACCAGTTCAAGCTGCAAAGGTTAACAAGAGGTGGAAGAAACCAAAGGAGCCAAGGTATAACACAAGAAGGAAATGGAGCTGTAGCAATGCAAGAACAGAGGAGAGGGTAGTTGAGGATGATGAGACAGATTCAGGATCTGATTTCTATGTTGATTCAGATTATGATTGGGAGCATGATGAGTTTAATGATACAAACTTTGAAGAAAATGTCACACAGCCAAGGGTTGTTGAGGAATTTGATGACATGGGATATGGAGGCTACTGTTCAAATGACCATGGAGATTCTGATGACCTTGAGAGTTTAGATGGTAGTGAAACAGAGGAAGATGAGAATGGGAATCCACTTCCAAAGAAGATAAACAAGGGAGTGAAGATCAAACCTTGGATCAAGTCTGTGGGTTTGAGAAATCCCAAGTTAGGTTGGGGTTGGCTTTCCCAAACTCAGAGCAACTTAAGGAGGCTATTAGGGAGTGTGCAATCAAAAACCAGCTGGGTTTGTGGTTTGAAAAGAATTCAAAGTATAAGATTGAGGTCAACTGCCAATGGGACTGCCCATTCAGATTGTATGCTAGTACTTCCAAGGGTGAGGGTCCATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

421

Amino Acids

48.65

Weight (kDa)

6.07

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11351
rosa_laevigata	RLG00000006487
rosa_multiflora	Rmu_sc0000073.1_g000011 Rmu_sc0004670.1_g000011 Rmu_ssc0000438.1_g000045
rosa_roxburghii	Rroxscaffold_4G00308140
rosa_rugosa	Rorug03G0261300
rosa_samantha	Rh2AG374900 Rh2AG429000 Rh2CG414600 Rh2CG442800 Rh3DG234800 Rh3DG253100 Rh4BG360500 Rh4DG248400 Rh6CG186500 Rh6DG178100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	17, 107, 805, 1055
AcsI	RAATTY	3 cut(s)	40, 896, 1173
AfaI	GTAC	2 cut(s)	51, 1236
AfiI	CCNNNNNNNGG	1 cut(s)	1079
AflII	CTTAAG	1 cut(s)	1114
AgsI	TTSAA	7 cut(s)	173, 260, 671, 863, 930, 1168, 1178
AluBI	AGCT	9 cut(s)	106, 221, 398, 446, 497, 509, 674, 741, 1152
AluI	AGCT	9 cut(s)	106, 221, 398, 446, 497, 509, 674, 741, 1152
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	779
Alw44I	GTGCAC	1 cut(s)	142
AlwI	GGATC	4 cut(s)	17, 107, 805, 1055
AlwNI	CAGNNNCTG	2 cut(s)	622, 800
ApaLI	GTGCAC	1 cut(s)	142
ApeKI	GCWGC	3 cut(s)	176, 494, 674
ApoI	RAATTY	3 cut(s)	40, 896, 1173
AspS9I	GGNCC	2 cut(s)	26, 1252
AsuHPI	GGTGA	3 cut(s)	201, 302, 1258
AvaII	GGWCC	2 cut(s)	26, 1252
BaeGI	GKGCMC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	188, 506, 661
BccI	CCATC	2 cut(s)	272, 962
BcoDI	GTCTC	1 cut(s)	779
BfaI	CTAG	4 cut(s)	69, 216, 510, 1232
BfmI	CTRYAG	2 cut(s)	225, 742
BfrI	CTTAAG	1 cut(s)	1114
BisI	GCNGC	3 cut(s)	177, 495, 675
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	3 cut(s)	178, 496, 676
BmcAI	AGTACT	1 cut(s)	1236
Bme18I	GGWCC	2 cut(s)	26, 1252
BmgT120I	GGNCC	2 cut(s)	26, 1252
BmiI	GGNNCC	2 cut(s)	711, 1253
BmsI	GCATC	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	977
BsaJI	CCNNGG	5 cut(s)	713, 881, 937, 1043, 1241
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	1079
Bse1I	ACTGG	2 cut(s)	196, 665
Bse3DI	GCAATG	1 cut(s)	754
BseDI	CCNNGG	5 cut(s)	713, 881, 937, 1043, 1241
BseGI	GGATG	3 cut(s)	100, 568, 784
BseLI	CCNNNNNNNGG	1 cut(s)	1079
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	3 cut(s)	330, 485, 1118
BseNI	ACTGG	2 cut(s)	196, 665
BseRI	GAGGAG	1 cut(s)	776
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	188, 506, 661
BseYI	CCCAGC	1 cut(s)	1152
BsiHKAI	GWGCWC	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	327, 1222
BslI	CCNNNNNNNGG	1 cut(s)	1079
BsmAI	GTCTC	1 cut(s)	779
BsmFI	GGGAC	2 cut(s)	327, 1222
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	8 cut(s)	9, 97, 112, 206, 253, 797, 1035, 1047
Bsp1720I	GCTNAGC	1 cut(s)	498
Bsp19I	CCATGG	1 cut(s)	937
BspCNI	CTCAG	3 cut(s)	331, 484, 1117
BspLI	GGNNCC	2 cut(s)	711, 1253
BspPI	GGATC	4 cut(s)	17, 107, 805, 1055
BspTI	CTTAAG	1 cut(s)	1114
BsrDI	GCAATG	1 cut(s)	754
BsrGI	TGTACA	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	196, 665
BssECI	CCNNGG	5 cut(s)	713, 881, 937, 1043, 1241
BssMI	GATC	8 cut(s)	9, 97, 112, 206, 253, 797, 1035, 1047
BssT1I	CCWWGG	5 cut(s)	713, 881, 937, 1043, 1241
Bst4CI	ACNGT	3 cut(s)	451, 618, 926
Bst6I	CTCTTC	4 cut(s)	71, 459, 521, 588
BstAFI	CTTAAG	1 cut(s)	1114
BstAUI	TGTACA	1 cut(s)	49
BstDEI	CTNAG	4 cut(s)	339, 471, 498, 1104
BstDSI	CCRYGG	1 cut(s)	937
BstF5I	GGATG	3 cut(s)	100, 568, 784
BstKTI	GATC	8 cut(s)	12, 100, 115, 209, 256, 800, 1038, 1050
BstMAI	GTCTC	1 cut(s)	779
BstMBI	GATC	8 cut(s)	9, 97, 112, 206, 253, 797, 1035, 1047
BstSFI	CTRYAG	2 cut(s)	225, 742
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	188, 506, 661
BstX2I	RGATCY	2 cut(s)	9, 797
BstYI	RGATCY	2 cut(s)	9, 797
BtgI	CCRYGG	1 cut(s)	937
BtsCI	GGATG	3 cut(s)	100, 568, 784
BtsI	GCAGTG	1 cut(s)	620
BtsIMutI	CAGTG	2 cut(s)	52, 620
CaiI	CAGNNNCTG	2 cut(s)	622, 800
Cfr13I	GGNCC	2 cut(s)	26, 1252
Csp6I	GTAC	2 cut(s)	50, 1235
CviAII	CATG	4 cut(s)	515, 836, 907, 938
CviQI	GTAC	2 cut(s)	50, 1235
DdeI	CTNAG	4 cut(s)	339, 471, 498, 1104
DpnI	GATC	8 cut(s)	11, 99, 114, 208, 255, 799, 1037, 1049
DpnII	GATC	8 cut(s)	9, 97, 112, 206, 253, 797, 1035, 1047
Eam1104I	CTCTTC	4 cut(s)	71, 459, 521, 588
EarI	CTCTTC	4 cut(s)	71, 459, 521, 588
Eco130I	CCWWGG	5 cut(s)	713, 881, 937, 1043, 1241
Eco47I	GGWCC	2 cut(s)	26, 1252
EcoRI	GAATTC	1 cut(s)	1173
EcoT14I	CCWWGG	5 cut(s)	713, 881, 937, 1043, 1241
ErhI	CCWWGG	5 cut(s)	713, 881, 937, 1043, 1241
FaeI	CATG	4 cut(s)	518, 839, 910, 941
FaqI	GGGAC	2 cut(s)	327, 1222
FatI	CATG	4 cut(s)	514, 835, 906, 937
Fnu4HI	GCNGC	3 cut(s)	177, 495, 675
FokI	GGATG	3 cut(s)	107, 575, 791
Fsp4HI	GCNGC	3 cut(s)	177, 495, 675
FspBI	CTAG	4 cut(s)	69, 216, 510, 1232
GluI	GCNGC	3 cut(s)	177, 495, 675
GsaI	CCCAGC	1 cut(s)	1156
Hin1II	CATG	4 cut(s)	518, 839, 910, 941
HincII	GTYRAC	2 cut(s)	685, 1197
HindII	GTYRAC	2 cut(s)	685, 1197
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	5 cut(s)	20, 791, 815, 944, 1000
HpaI	GTTAAC	1 cut(s)	685
HphI	GGTGA	3 cut(s)	201, 302, 1258
Hpy166II	GTNNAC	4 cut(s)	50, 144, 685, 1197
Hpy188I	TCNGA	9 cut(s)	154, 277, 474, 649, 802, 820, 949, 1107, 1222
Hpy188III	TCNNGA	6 cut(s)	24, 116, 216, 242, 257, 795
Hpy8I	GTNNAC	4 cut(s)	50, 144, 685, 1197
HpyAV	CCTTC	4 cut(s)	222, 304, 400, 723
HpyCH4III	ACNGT	3 cut(s)	451, 618, 926
HpyCH4V	TGCA	7 cut(s)	144, 545, 625, 644, 677, 752, 1138
HpyF3I	CTNAG	4 cut(s)	339, 471, 498, 1104
Hsp92II	CATG	4 cut(s)	518, 839, 910, 941
KspAI	GTTAAC	1 cut(s)	685
Kzo9I	GATC	8 cut(s)	9, 97, 112, 206, 253, 797, 1035, 1047
LmnI	GCTCC	3 cut(s)	709, 738, 832
Lsp1109I	GCAGC	3 cut(s)	188, 506, 661
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	4 cut(s)	69, 216, 510, 1232
MaeIII	GTNAC	2 cut(s)	618, 871
MalI	GATC	8 cut(s)	11, 99, 114, 208, 255, 799, 1037, 1049
MboI	GATC	8 cut(s)	9, 97, 112, 206, 253, 797, 1035, 1047
MboII	GAAGA	9 cut(s)	88, 476, 538, 605, 709, 875, 998, 1027, 1045
MflI	RGATCY	2 cut(s)	9, 797
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	7 cut(s)	40, 55, 249, 503, 584, 896, 1173
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	72
MseI	TTAA	5 cut(s)	200, 431, 684, 846, 1115
MspA1I	CMGCKG	1 cut(s)	1152
MspCI	CTTAAG	1 cut(s)	1114
NcoI	CCATGG	1 cut(s)	937
NdeII	GATC	8 cut(s)	9, 97, 112, 206, 253, 797, 1035, 1047
NlaIII	CATG	4 cut(s)	518, 839, 910, 941
NlaIV	GGNNCC	2 cut(s)	711, 1253
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	2 cut(s)	618, 871
PfeI	GAWTC	4 cut(s)	791, 815, 944, 1000
PkrI	GCNGC	3 cut(s)	178, 496, 676
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	1152
PspN4I	GGNNCC	2 cut(s)	711, 1253
PspPI	GGNCC	2 cut(s)	26, 1252
PstNI	CAGNNNCTG	2 cut(s)	622, 800
PsuI	RGATCY	2 cut(s)	9, 797
PvuII	CAGCTG	1 cut(s)	1152
RsaI	GTAC	2 cut(s)	51, 1236
RsaNI	GTAC	2 cut(s)	50, 1235
SaqAI	TTAA	5 cut(s)	200, 431, 684, 846, 1115
SatI	GCNGC	3 cut(s)	177, 495, 675
Sau3AI	GATC	8 cut(s)	9, 97, 112, 206, 253, 797, 1035, 1047
Sau96I	GGNCC	2 cut(s)	26, 1252
ScaI	AGTACT	1 cut(s)	1236
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	2 cut(s)	225, 742
SinI	GGWCC	2 cut(s)	26, 1252
SmlI	CTYRAG	2 cut(s)	956, 1114
SmoI	CTYRAG	2 cut(s)	956, 1114
Sse9I	AATT	7 cut(s)	40, 55, 249, 503, 584, 896, 1173
SspMI	CTAG	4 cut(s)	69, 216, 510, 1232
StyI	CCWWGG	5 cut(s)	713, 881, 937, 1043, 1241
TaaI	ACNGT	3 cut(s)	451, 618, 926
TaqI	TCGA	1 cut(s)	108
TasI	AATT	7 cut(s)	40, 55, 249, 503, 584, 896, 1173
TatI	WGTACW	2 cut(s)	49, 1234
TfiI	GAWTC	4 cut(s)	791, 815, 944, 1000
Tru1I	TTAA	5 cut(s)	200, 431, 684, 846, 1115
Tru9I	TTAA	5 cut(s)	200, 431, 684, 846, 1115
TscAI	CASTG	2 cut(s)	52, 627
TseFI	GTSAC	2 cut(s)	618, 871
TseI	GCWGC	3 cut(s)	176, 494, 674
Tsp45I	GTSAC	2 cut(s)	618, 871
TspRI	CASTG	2 cut(s)	52, 627
Vha464I	CTTAAG	1 cut(s)	1114
VneI	GTGCAC	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	26, 1252
XapI	RAATTY	3 cut(s)	40, 896, 1173
XbaI	TCTAGA	1 cut(s)	215
XspI	CTAG	4 cut(s)	69, 216, 510, 1232
ZrmI	AGTACT	1 cut(s)	1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.