Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000073.1

Orthogroup ID

OG0014636

Physical Location & Seq

Genomic Coordinates Reverse (-)

61846 .. 64401

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000073.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atgaacaatattgcgtatgcattggggtgtaggaagaagcacatctcctaccatttcaagctgtctcagacatcaagcaatgaaagattcattccaatcaagaatgttgtagatgctctagaaattgtgaagggctatacctttgaggggaagagagaagatgaattagatgatctgaagccaaaagaccctgattgggaaaatcctctgaataaatgcagtgcagcagagaaggaaagaatgtttgaggcagcaaacttgcaggctaatgtgttgggttcacaagcaagtgaagcaaagaaaaagtgggacacaataggaaaacctttcaaacagaggggtataaggagggaaagagaggctgcaaagaaagctgaaaaaggggcttgggagaaggctgaaacagaggttacaaaggttagggaaagggaggaagctgatagattgagagcaagagaggctcggaaagaggcagaaaatatagaggggggagctacaaataagagggcaagagaggctgtagctatgagcctaagagagataagttggcagaagaaactagggaaagatgatggttcaaacttctatgtctattcaaattatgatctcatccaagatgagtttattgatgctgaatttgaagaaaatgtcacagatctaagggttgttgaggagtttgaagatataggtttcagaggctattgttcagatgaaactggagattctgatgagttggagagtttgagtggatttgatactgaagaagatgaggatgggaatccacttccaaagaagcttaataaaggagtgaagatcagacctaggataagatcagtggatctgaaaaatccaaagttcaggttaggttggtttctaaatgctgaacataggcactgtgtgaggcttctctacaacaatttcaaggccaaggatccaagagaggggctgaagcagttggtttggaatgcagcgagatccagcactgttgtgtggtacaacaagcacataggtgaattgaggaagcttagtgatgatgcttggaaatggtttcaggacaagaatccagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

356

Amino Acids

41.26

Weight (kDa)

6.6

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11351
rosa_laevigata	RLG00000006487
rosa_multiflora	Rmu_sc0000073.1_g000011 Rmu_sc0004670.1_g000011 Rmu_ssc0000438.1_g000045
rosa_roxburghii	Rroxscaffold_4G00308140
rosa_rugosa	Rorug03G0261300
rosa_samantha	Rh2AG374900 Rh2AG429000 Rh2CG414600 Rh2CG442800 Rh3DG234800 Rh3DG253100 Rh4BG360500 Rh4DG248400 Rh6CG186500 Rh6DG178100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	846, 926, 939, 969
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	3 cut(s)	197, 780, 968
AdeI	CACNNNGTG	1 cut(s)	898
AfaI	GTAC	1 cut(s)	995
AfiI	CCNNNNNNNGG	3 cut(s)	147, 196, 941
AgsI	TTSAA	7 cut(s)	58, 331, 579, 597, 641, 680, 922
AleI	CACNNNNGTG	2 cut(s)	986, 1008
AluBI	AGCT	7 cut(s)	61, 374, 437, 494, 524, 796, 1024
AluI	AGCT	7 cut(s)	61, 374, 437, 494, 524, 796, 1024
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	4 cut(s)	846, 926, 939, 969
AoxI	GGCC	1 cut(s)	924
ApeKI	GCWGC	4 cut(s)	224, 251, 362, 968
ApoI	RAATTY	1 cut(s)	635
AspA2I	CCTAGG	1 cut(s)	821
AsuHPI	GGTGA	1 cut(s)	1022
AvrII	CCTAGG	1 cut(s)	821
BamHI	GGATCC	1 cut(s)	931
BbvI	GCAGC	4 cut(s)	236, 263, 349, 980
BccI	CCATC	2 cut(s)	566, 767
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	3 cut(s)	119, 560, 822
BfmI	CTRYAG	1 cut(s)	519
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	4 cut(s)	225, 252, 363, 969
BlnI	CCTAGG	1 cut(s)	821
BlsI	GCNGC	4 cut(s)	226, 253, 364, 970
BmiI	GGNNCC	1 cut(s)	933
BmsI	GCATC	3 cut(s)	103, 619, 1024
BpmI	CTGGAG	1 cut(s)	738
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	821, 927
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 196, 941
Bse1I	ACTGG	1 cut(s)	721
Bse3DI	GCAATG	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	821, 927
BseGI	GGATG	2 cut(s)	609, 778
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	3 cut(s)	147, 196, 941
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	721
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	4 cut(s)	236, 263, 349, 980
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	926
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	147, 196, 941
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	970
BsnI	GGCC	1 cut(s)	926
Bsp143I	GATC	8 cut(s)	172, 604, 655, 813, 830, 838, 931, 974
BspANI	GGCC	1 cut(s)	926
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	933
BspPI	GGATC	4 cut(s)	846, 926, 939, 969
BsrDI	GCAATG	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	721
BssECI	CCNNGG	2 cut(s)	821, 927
BssMI	GATC	8 cut(s)	172, 604, 655, 813, 830, 838, 931, 974
BssT1I	CCWWGG	2 cut(s)	821, 927
Bst4CI	ACNGT	2 cut(s)	896, 985
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	4 cut(s)	66, 533, 659, 1025
BstF5I	GGATG	2 cut(s)	609, 778
BstKTI	GATC	8 cut(s)	175, 607, 658, 816, 833, 841, 934, 977
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	8 cut(s)	172, 604, 655, 813, 830, 838, 931, 974
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 371, 458, 515
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	4 cut(s)	236, 263, 349, 980
BstX2I	RGATCY	4 cut(s)	655, 838, 931, 974
BstYI	RGATCY	4 cut(s)	655, 838, 931, 974
BsuRI	GGCC	1 cut(s)	926
BtsCI	GGATG	2 cut(s)	609, 778
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	4 cut(s)	226, 840, 892, 981
Cac8I	GCNNGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	994
CviQI	GTAC	1 cut(s)	994
DdeI	CTNAG	4 cut(s)	66, 533, 659, 1025
DpnI	GATC	8 cut(s)	174, 606, 657, 815, 832, 840, 933, 976
DpnII	GATC	8 cut(s)	172, 604, 655, 813, 830, 838, 931, 974
DraIII	CACNNNGTG	1 cut(s)	898
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	821, 927
Eco57I	CTGAAG	3 cut(s)	197, 780, 968
EcoT14I	CCWWGG	2 cut(s)	821, 927
EcoT22I	ATGCAT	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	821, 927
FaqI	GGGAC	1 cut(s)	323
Fnu4HI	GCNGC	4 cut(s)	225, 252, 363, 969
FokI	GGATG	2 cut(s)	596, 785
Fsp4HI	GCNGC	4 cut(s)	225, 252, 363, 969
FspBI	CTAG	3 cut(s)	119, 560, 822
GluI	GCNGC	4 cut(s)	225, 252, 363, 969
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	1 cut(s)	926
HindIII	AAGCTT	2 cut(s)	794, 1022
HinfI	GANTC	4 cut(s)	87, 722, 778, 1060
HphI	GGTGA	1 cut(s)	1022
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	9 cut(s)	69, 177, 210, 465, 695, 709, 727, 818, 843
Hpy188III	TCNNGA	3 cut(s)	100, 119, 1052
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	124, 226, 388
HpyCH4III	ACNGT	2 cut(s)	896, 985
HpyCH4V	TGCA	6 cut(s)	20, 219, 224, 262, 365, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 371, 458, 515
HpyF3I	CTNAG	4 cut(s)	66, 533, 659, 1025
Kzo9I	GATC	8 cut(s)	172, 604, 655, 813, 830, 838, 931, 974
LmnI	GCTCC	1 cut(s)	491
LpnPI	CCDG	6 cut(s)	204, 248, 702, 844, 991, 1037
Lsp1109I	GCAGC	4 cut(s)	236, 263, 349, 980
LweI	GCATC	3 cut(s)	103, 619, 1024
MaeI	CTAG	3 cut(s)	119, 560, 822
MaeIII	GTNAC	2 cut(s)	409, 649
MalI	GATC	8 cut(s)	174, 606, 657, 815, 832, 840, 933, 976
MboI	GATC	8 cut(s)	172, 604, 655, 813, 830, 838, 931, 974
MboII	GAAGA	9 cut(s)	46, 163, 170, 565, 653, 692, 773, 776, 823
MflI	RGATCY	4 cut(s)	655, 838, 931, 974
MluCI	AATT	6 cut(s)	123, 164, 598, 635, 916, 1013
MmeI	TCCRAC	1 cut(s)	714
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	1 cut(s)	798
MslI	CAYNNNNRTG	3 cut(s)	25, 986, 1008
Mva1269I	GAATGC	1 cut(s)	970
MwoI	GCNNNNNNNGC	4 cut(s)	293, 371, 458, 515
NdeII	GATC	8 cut(s)	172, 604, 655, 813, 830, 838, 931, 974
NlaIV	GGNNCC	1 cut(s)	933
NmuCI	GTSAC	1 cut(s)	649
NsiI	ATGCAT	1 cut(s)	22
OliI	CACNNNNGTG	2 cut(s)	986, 1008
PctI	GAATGC	1 cut(s)	970
PfeI	GAWTC	4 cut(s)	87, 722, 778, 1060
PkrI	GCNGC	4 cut(s)	226, 253, 364, 970
PspN4I	GGNNCC	1 cut(s)	933
PsuI	RGATCY	4 cut(s)	655, 838, 931, 974
RsaI	GTAC	1 cut(s)	995
RsaNI	GTAC	1 cut(s)	994
RseI	CAYNNNNRTG	3 cut(s)	25, 986, 1008
SaqAI	TTAA	1 cut(s)	798
SatI	GCNGC	4 cut(s)	225, 252, 363, 969
Sau3AI	GATC	8 cut(s)	172, 604, 655, 813, 830, 838, 931, 974
SfaNI	GCATC	3 cut(s)	103, 619, 1024
SfcI	CTRYAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	3 cut(s)	25, 986, 1008
Sse9I	AATT	6 cut(s)	123, 164, 598, 635, 916, 1013
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	3 cut(s)	119, 560, 822
StyI	CCWWGG	2 cut(s)	821, 927
TaaI	ACNGT	2 cut(s)	896, 985
TasI	AATT	6 cut(s)	123, 164, 598, 635, 916, 1013
TfiI	GAWTC	4 cut(s)	87, 722, 778, 1060
Tru1I	TTAA	1 cut(s)	798
Tru9I	TTAA	1 cut(s)	798
TscAI	CASTG	4 cut(s)	226, 840, 899, 988
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	4 cut(s)	224, 251, 362, 968
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	5 cut(s)	17, 79, 96, 177, 726
TspRI	CASTG	4 cut(s)	226, 840, 899, 988
XapI	RAATTY	1 cut(s)	635
XbaI	TCTAGA	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	821
XspI	CTAG	3 cut(s)	119, 560, 822
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.