Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014636

Physical Location & Seq

Genomic Coordinates Forward (+)

22435245 .. 22436516

Gene Structure 1272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG234800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTTTGAAGCAGCCAACTTACTTGGTAGCCAGTTAAATAGATCACCTTCTAGAGCTACTGTGGGGACCAGTGTTCCCGCGATAATTGATCTTGAAGATGAGGGTGGTTCAGATGGTAATGAAGGTGAAACAAGGGTAGGTGTGGGCTTAAATGTGGGAAGAGAAGAAGGTGGAGTAAATGTTGGGGTTAGACCAAATCAAAGTACATTTGCAAGTCTTTCTGATATTCTGCCAGATGTGTTAGGGTCCCAAGCAAGTATAGGGCAGGAGGGACACAGGAGGAAAAGTGGTGGAACTGAGGGGCATAAGGGTAACTTCAGAAAGGCCACTACTAAACCTAAAAGGGTGAAGCATTGTGCCAAAAGGAGTTGGCCTGCCTCTGCCACAGCTACTTTAAACAAGAAGCTTGAGGATTTAGAAAGGAGAGAAAGAGAGGCTGCTGAGAAGGCTGAAAAAGAAGCTTGGGAGAAGGCTGAAAGAGAGGCAGCCGAGTTAAGAGAAAGGCAAGCTACTGTTGAGGAACAAGAGGAGGCTCAGAGATTGAGAGAAAGGGAGGCTGCCGAGGAGAAATTGGCAGAAGAGTTGAGGGAGAGATTACAACAGTCACAGCAAAGCAAGAAAGGGAAAAGCAAGGAGGCTGCTGTATCTGATAAGGGAAAAAAACCAGTTCAGGCTACAAAGGTTGACAAGAGGGGGAAGAAACCAAAAGATCCAAGGTATAACATAAGAAGGAAAGGGAGCAGCAACAATGCAAGAACAGATGAGAGGGTAGTTGAGGATGATGAGACGGATTCAGGATCTGATTTCTATGTTGATTCAGATTATGATTTGGAGCATGATGAGTTTGATGATGCAGACTTTGAAGAAAATGTCACACAGCCAAGGGTTGTTGAGGAATTTGATGACATGGGGTATGGAGGCTACTGTTCAGATAACCATGGAGATTCTAATGATCTTGAGAGTATAGAGGGTTGTGAAACAGAGGAAAATGAGGATGGGAATTCACTTCCAAAAAAGATTAACAAGGGAGTAAAGATCAGACCTTGGATCAGGTCTGTGGATTTGAGAAATCCCAAATTCAGGTTGGGGTTAGCTTTCCCAAACTCAGAGCAACTTAAGGAGGCTGTTAGGGAGTGTGCAATCAGAAACCAATTGGGTTTGTGGTTTGAGAAGAATTCAAAGCATAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

397

Amino Acids

44.44

Weight (kDa)

5.41

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11351
rosa_laevigata	RLG00000006487
rosa_multiflora	Rmu_sc0000073.1_g000011 Rmu_sc0004670.1_g000011 Rmu_ssc0000438.1_g000045
rosa_roxburghii	Rroxscaffold_4G00308140
rosa_rugosa	Rorug03G0261300
rosa_samantha	Rh2AG374900 Rh2AG429000 Rh2CG414600 Rh2CG442800 Rh3DG234800 Rh3DG253100 Rh4BG360500 Rh4DG248400 Rh6CG186500 Rh6DG178100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	3 cut(s)	704, 805, 1055
AcsI	RAATTY	5 cut(s)	896, 1000, 1076, 1174, 1188
AcuI	CTGAAG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	1080
AflII	CTTAAG	1 cut(s)	1115
AgsI	TTSAA	4 cut(s)	8, 95, 863, 1179
AluBI	AGCT	6 cut(s)	56, 389, 406, 461, 509, 1094
AluI	AGCT	6 cut(s)	56, 389, 406, 461, 509, 1094
Alw26I	GTCTC	1 cut(s)	779
AlwI	GGATC	3 cut(s)	704, 805, 1055
AlwNI	CAGNNNCTG	1 cut(s)	800
AoxI	GGCC	2 cut(s)	324, 371
ApeKI	GCWGC	6 cut(s)	11, 437, 485, 557, 638, 741
ApoI	RAATTY	5 cut(s)	896, 1000, 1076, 1174, 1188
AspS9I	GGNCC	2 cut(s)	66, 246
AsuHPI	GGTGA	3 cut(s)	36, 137, 358
AvaII	GGWCC	2 cut(s)	66, 246
BbvI	GCAGC	6 cut(s)	23, 424, 497, 544, 625, 753
BccI	CCATC	2 cut(s)	107, 989
BcoDI	GTCTC	1 cut(s)	779
BfaI	CTAG	1 cut(s)	51
BfrI	CTTAAG	1 cut(s)	1115
BisI	GCNGC	6 cut(s)	12, 438, 486, 558, 639, 742
BlsI	GCNGC	6 cut(s)	13, 439, 487, 559, 640, 743
Bme18I	GGWCC	2 cut(s)	66, 246
BmgT120I	GGNCC	2 cut(s)	66, 246
BmiI	GGNNCC	3 cut(s)	67, 247, 248
BmsI	GCATC	1 cut(s)	841
BpuEI	CTTGAG	2 cut(s)	428, 977
BsaJI	CCNNGG	5 cut(s)	561, 713, 881, 937, 1043
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	1080
Bse1I	ACTGG	3 cut(s)	31, 69, 665
BseDI	CCNNGG	5 cut(s)	561, 713, 881, 937, 1043
BseGI	GGATG	2 cut(s)	784, 1000
BseLI	CCNNNNNNNGG	1 cut(s)	1080
BseMII	CTCAG	4 cut(s)	288, 432, 548, 1119
BseNI	ACTGG	3 cut(s)	31, 69, 665
BseRI	GAGGAG	2 cut(s)	542, 578
BseXI	GCAGC	6 cut(s)	23, 424, 497, 544, 625, 753
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	326, 373
BslFI	GGGAC	3 cut(s)	79, 232, 285
BslI	CCNNNNNNNGG	1 cut(s)	1080
BsmAI	GTCTC	1 cut(s)	779
BsmBI	CGTCTC	1 cut(s)	779
BsmFI	GGGAC	3 cut(s)	79, 232, 285
BsnI	GGCC	2 cut(s)	326, 373
Bsp143I	GATC	7 cut(s)	41, 88, 709, 797, 952, 1035, 1047
Bsp19I	CCATGG	1 cut(s)	937
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	2 cut(s)	326, 373
BspCNI	CTCAG	4 cut(s)	289, 433, 547, 1118
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	67, 247, 248
BspPI	GGATC	3 cut(s)	704, 805, 1055
BspTI	CTTAAG	1 cut(s)	1115
BsrI	ACTGG	3 cut(s)	31, 69, 665
BssECI	CCNNGG	5 cut(s)	561, 713, 881, 937, 1043
BssMI	GATC	7 cut(s)	41, 88, 709, 797, 952, 1035, 1047
BssT1I	CCWWGG	4 cut(s)	713, 881, 937, 1043
Bst4CI	ACNGT	4 cut(s)	61, 514, 603, 926
Bst6I	CTCTTC	2 cut(s)	154, 573
BstAFI	CTTAAG	1 cut(s)	1115
BstC8I	GCNNGC	2 cut(s)	375, 507
BstDEI	CTNAG	4 cut(s)	297, 441, 534, 1105
BstDSI	CCRYGG	1 cut(s)	937
BstF5I	GGATG	2 cut(s)	784, 1000
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	7 cut(s)	44, 91, 712, 800, 955, 1038, 1050
BstMAI	GTCTC	1 cut(s)	779
BstMBI	GATC	7 cut(s)	41, 88, 709, 797, 952, 1035, 1047
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	6 cut(s)	23, 424, 497, 544, 625, 753
BstX2I	RGATCY	2 cut(s)	709, 797
BstYI	RGATCY	2 cut(s)	709, 797
BsuRI	GGCC	2 cut(s)	326, 373
BtgI	CCRYGG	1 cut(s)	937
BtsCI	GGATG	2 cut(s)	784, 1000
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	375, 507
CaiI	CAGNNNCTG	1 cut(s)	800
Cfr13I	GGNCC	2 cut(s)	66, 246
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	3 cut(s)	836, 907, 938
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	4 cut(s)	297, 441, 534, 1105
DpnI	GATC	7 cut(s)	43, 90, 711, 799, 954, 1037, 1049
DpnII	GATC	7 cut(s)	41, 88, 709, 797, 952, 1035, 1047
DraI	TTTAAA	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	154, 573
EarI	CTCTTC	2 cut(s)	154, 573
Eco130I	CCWWGG	4 cut(s)	713, 881, 937, 1043
Eco47I	GGWCC	2 cut(s)	66, 246
Eco57I	CTGAAG	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRI	GAATTC	2 cut(s)	1000, 1174
EcoT14I	CCWWGG	4 cut(s)	713, 881, 937, 1043
ErhI	CCWWGG	4 cut(s)	713, 881, 937, 1043
Esp3I	CGTCTC	1 cut(s)	779
FaeI	CATG	3 cut(s)	839, 910, 941
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	3 cut(s)	79, 232, 285
FatI	CATG	3 cut(s)	835, 906, 937
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	6 cut(s)	12, 438, 486, 558, 639, 742
FokI	GGATG	2 cut(s)	791, 1007
Fsp4HI	GCNGC	6 cut(s)	12, 438, 486, 558, 639, 742
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	6 cut(s)	12, 438, 486, 558, 639, 742
HaeIII	GGCC	2 cut(s)	326, 373
Hin1II	CATG	3 cut(s)	839, 910, 941
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	2 cut(s)	404, 459
HinfI	GANTC	3 cut(s)	791, 815, 944
HphI	GGTGA	3 cut(s)	36, 137, 358
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188III	TCNNGA	4 cut(s)	51, 92, 795, 956
Hpy8I	GTNNAC	1 cut(s)	685
HpyAV	CCTTC	6 cut(s)	57, 116, 161, 439, 463, 723
HpyCH4III	ACNGT	4 cut(s)	61, 514, 603, 926
HpyCH4V	TGCA	4 cut(s)	212, 752, 854, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	4 cut(s)	297, 441, 534, 1105
Hsp92II	CATG	3 cut(s)	839, 910, 941
KflI	GGGWCCC	1 cut(s)	246
Kzo9I	GATC	7 cut(s)	41, 88, 709, 797, 952, 1035, 1047
LmnI	GCTCC	2 cut(s)	738, 832
Lsp1109I	GCAGC	6 cut(s)	23, 424, 497, 544, 625, 753
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	3 cut(s)	311, 603, 871
MalI	GATC	7 cut(s)	43, 90, 711, 799, 954, 1037, 1049
MboI	GATC	7 cut(s)	41, 88, 709, 797, 952, 1035, 1047
MboII	GAAGA	7 cut(s)	107, 171, 176, 590, 709, 875, 1183
MfeI	CAATTG	1 cut(s)	1151
MflI	RGATCY	2 cut(s)	709, 797
MluCI	AATT	8 cut(s)	84, 569, 896, 1000, 1076, 1151, 1174, 1188
MseI	TTAA	6 cut(s)	35, 149, 395, 494, 1020, 1116
MspCI	CTTAAG	1 cut(s)	1115
MunI	CAATTG	1 cut(s)	1151
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	937
NdeII	GATC	7 cut(s)	41, 88, 709, 797, 952, 1035, 1047
NlaIII	CATG	3 cut(s)	839, 910, 941
NlaIV	GGNNCC	3 cut(s)	67, 247, 248
NmeAIII	GCCGAG	2 cut(s)	514, 586
NmuCI	GTSAC	2 cut(s)	603, 871
PfeI	GAWTC	3 cut(s)	791, 815, 944
PkrI	GCNGC	6 cut(s)	13, 439, 487, 559, 640, 743
PpuMI	RGGWCCY	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	246
PspN4I	GGNNCC	3 cut(s)	67, 247, 248
PspPI	GGNCC	2 cut(s)	66, 246
PspPPI	RGGWCCY	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	2 cut(s)	709, 797
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	6 cut(s)	35, 149, 395, 494, 1020, 1116
SatI	GCNGC	6 cut(s)	12, 438, 486, 558, 639, 742
Sau3AI	GATC	7 cut(s)	41, 88, 709, 797, 952, 1035, 1047
Sau96I	GGNCC	2 cut(s)	66, 246
SfaNI	GCATC	1 cut(s)	841
SinI	GGWCC	2 cut(s)	66, 246
SmlI	CTYRAG	3 cut(s)	407, 956, 1115
SmoI	CTYRAG	3 cut(s)	407, 956, 1115
Sse9I	AATT	8 cut(s)	84, 569, 896, 1000, 1076, 1151, 1174, 1188
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	51
StyI	CCWWGG	4 cut(s)	713, 881, 937, 1043
TaaI	ACNGT	4 cut(s)	61, 514, 603, 926
TasI	AATT	8 cut(s)	84, 569, 896, 1000, 1076, 1151, 1174, 1188
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	3 cut(s)	791, 815, 944
Tru1I	TTAA	6 cut(s)	35, 149, 395, 494, 1020, 1116
Tru9I	TTAA	6 cut(s)	35, 149, 395, 494, 1020, 1116
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	603, 871
TseI	GCWGC	6 cut(s)	11, 437, 485, 557, 638, 741
Tsp45I	GTSAC	2 cut(s)	603, 871
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	1 cut(s)	76
Vha464I	CTTAAG	1 cut(s)	1115
VpaK11BI	GGWCC	2 cut(s)	66, 246
XapI	RAATTY	5 cut(s)	896, 1000, 1076, 1174, 1188
XbaI	TCTAGA	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1081
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.