Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014636

Physical Location & Seq

Genomic Coordinates Forward (+)

51978550 .. 51985551

Gene Structure 7002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG360500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGAAGATGTGGAGGATCTTTAGGGAGTCTGGACCACCCCCAGAAATTCCTGAGCATTTATACACCATGGAAATCTTTCATGGTGGGTATTTTGACAAGCAATTGGATGGGACAAAGAAAGCTACTGTGGGGACCAGTGTTCCAGAGATAATTGATCTTGAAGATGAGGGTGGTTCAGATGGTAATGAGGGTGAAACAATGGTGGGTGAAGGCTTAAATGTGGGAAGAGAAGAAGGTGGAGTAAATGTTGAGGTTAGGCCAAGTCAAAGCACATTTGCAGGTCTTTTTGATATTGTGCCAGATGTGTTGGGCTCACAAGCAAGTATAGGGCAGAAAGGACACAGTAGGAAAAGTGGTCAAACTAAAGGGCATAAGGCTGATTTAAACAAGAAACTTGAGGACATAGAAAGAAGAGAAAGAGAGGCTGCTGAGAAGGCTGAAAAAGAAGCTTGGGAAAAGGTTGAAAGAGAGGCTGCCGAGTTAAGAGAAAGCCAAGCTTCTGTTGAGGAACAAGAGGAAGCTCAGAGATTGAGAGAAAGAGAGGCTGCTAAGCAATTGGCTAGGGAGGAGGAAGAGAAGAGAGAACAAGATGCTGCAGAGAAAAGGGATGCAAAGGTTAACAAGAGGGGGAAGAAACCAAAGGAGCCAAGGTATAACATAAGAAGGAAATGGAGTTGCAGCAATGCAAGAACAGAGGAGAGGATAGTTGAGGATGATGAGACAGATTCAGGGTCTAATTTCTATGTTGATTCAGATTATGATTTGGAGCATGATGAGTTTAATGATACAGACTTTGAAGAAAATGTCACACGACCAAAGGTTGTTGAGGAATTTGATAACATGGGGTATAGAGGCTACTATTCAAATGACCATGGAGATTCTGATAACCTTGAGAGCTTAGTGAAACAGAGGAAGATGAGGATGGGAATCCACTTCCAAAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.28

Weight (kDa)

4.98

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11351
rosa_laevigata	RLG00000006487
rosa_multiflora	Rmu_sc0000073.1_g000011 Rmu_sc0004670.1_g000011 Rmu_ssc0000438.1_g000045
rosa_roxburghii	Rroxscaffold_4G00308140
rosa_rugosa	Rorug03G0261300
rosa_samantha	Rh2AG374900 Rh2AG429000 Rh2CG414600 Rh2CG442800 Rh3DG234800 Rh3DG253100 Rh4BG360500 Rh4DG248400 Rh6CG186500 Rh6DG178100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	2 cut(s)	48, 833
AgsI	TTSAA	4 cut(s)	164, 467, 800, 867
AluBI	AGCT	5 cut(s)	125, 452, 500, 524, 900
AluI	AGCT	5 cut(s)	125, 452, 500, 524, 900
Alw26I	GTCTC	1 cut(s)	716
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	5 cut(s)	428, 476, 548, 596, 681
ApoI	RAATTY	2 cut(s)	48, 833
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	35, 135
AsuHPI	GGTGA	2 cut(s)	206, 221
AvaII	GGWCC	2 cut(s)	35, 135
BanII	GRGCYC	1 cut(s)	317
BbvI	GCAGC	5 cut(s)	415, 463, 535, 583, 693
BccI	CCATC	3 cut(s)	104, 176, 919
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	597
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	5 cut(s)	429, 477, 549, 597, 682
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	5 cut(s)	430, 478, 550, 598, 683
Bme18I	GGWCC	2 cut(s)	35, 135
BmgT120I	GGNCC	2 cut(s)	35, 135
BmiI	GGNNCC	2 cut(s)	136, 648
BmsI	GCATC	2 cut(s)	583, 601
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	419, 914
BsaBI	GATNNNNATC	1 cut(s)	929
BsaJI	CCNNGG	3 cut(s)	69, 650, 874
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 638, 668
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	691
Bse8I	GATNNNNATC	1 cut(s)	929
BseDI	CCNNGG	3 cut(s)	69, 650, 874
BseGI	GGATG	4 cut(s)	115, 616, 721, 930
BseJI	GATNNNNATC	1 cut(s)	929
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	3 cut(s)	45, 423, 539
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	2 cut(s)	584, 713
BseXI	GCAGC	5 cut(s)	415, 463, 535, 583, 693
BshFI	GGCC	1 cut(s)	262
BslFI	GGGAC	2 cut(s)	127, 148
BsmAI	GTCTC	1 cut(s)	716
BsmFI	GGGAC	2 cut(s)	127, 148
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	18, 157
Bsp1720I	GCTNAGC	1 cut(s)	552
Bsp19I	CCATGG	2 cut(s)	69, 874
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	3 cut(s)	46, 424, 538
BspLI	GGNNCC	2 cut(s)	136, 648
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	691
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	3 cut(s)	69, 650, 874
BssMI	GATC	2 cut(s)	18, 157
BssT1I	CCWWGG	3 cut(s)	69, 650, 874
Bst4CI	ACNGT	2 cut(s)	130, 347
Bst6I	CTCTTC	4 cut(s)	223, 409, 570, 575
BstDEI	CTNAG	5 cut(s)	54, 432, 525, 552, 901
BstDSI	CCRYGG	2 cut(s)	69, 874
BstF5I	GGATG	4 cut(s)	115, 616, 721, 930
BstKTI	GATC	2 cut(s)	21, 160
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	2 cut(s)	18, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	5 cut(s)	415, 463, 535, 583, 693
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	2 cut(s)	69, 874
BtsCI	GGATG	4 cut(s)	115, 616, 721, 930
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	35, 135
CviAII	CATG	5 cut(s)	70, 83, 773, 844, 875
DdeI	CTNAG	5 cut(s)	54, 432, 525, 552, 901
DpnI	GATC	2 cut(s)	20, 159
DpnII	GATC	2 cut(s)	18, 157
DraI	TTTAAA	1 cut(s)	387
Eam1104I	CTCTTC	4 cut(s)	223, 409, 570, 575
EarI	CTCTTC	4 cut(s)	223, 409, 570, 575
Eco130I	CCWWGG	3 cut(s)	69, 650, 874
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	2 cut(s)	35, 135
EcoT14I	CCWWGG	3 cut(s)	69, 650, 874
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	3 cut(s)	69, 650, 874
FaeI	CATG	5 cut(s)	73, 86, 776, 847, 878
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
FaqI	GGGAC	2 cut(s)	127, 148
FatI	CATG	5 cut(s)	69, 82, 772, 843, 874
Fnu4HI	GCNGC	5 cut(s)	429, 477, 549, 597, 682
FokI	GGATG	4 cut(s)	122, 623, 728, 937
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	5 cut(s)	429, 477, 549, 597, 682
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	5 cut(s)	429, 477, 549, 597, 682
HaeIII	GGCC	1 cut(s)	262
Hin1II	CATG	5 cut(s)	73, 86, 776, 847, 878
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	2 cut(s)	450, 498
HinfI	GANTC	5 cut(s)	29, 728, 752, 881, 930
HpaI	GTTAAC	1 cut(s)	622
HphI	GGTGA	2 cut(s)	206, 221
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	4 cut(s)	181, 528, 757, 886
Hpy188III	TCNNGA	4 cut(s)	33, 53, 146, 161
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	4 cut(s)	206, 230, 430, 660
HpyCH4III	ACNGT	2 cut(s)	130, 347
HpyCH4V	TGCA	5 cut(s)	281, 599, 614, 681, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	5 cut(s)	54, 432, 525, 552, 901
Hsp92II	CATG	5 cut(s)	73, 86, 776, 847, 878
KspAI	GTTAAC	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	18, 157
LmnI	GCTCC	2 cut(s)	646, 769
LpnPI	CCDG	8 cut(s)	18, 57, 66, 151, 159, 267, 315, 717
Lsp1109I	GCAGC	5 cut(s)	415, 463, 535, 583, 693
LweI	GCATC	2 cut(s)	583, 601
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	808
MalI	GATC	2 cut(s)	20, 159
MboI	GATC	2 cut(s)	18, 157
MfeI	CAATTG	2 cut(s)	104, 557
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	6 cut(s)	48, 104, 153, 557, 739, 833
MlyI	GAGTC	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	5 cut(s)	218, 386, 485, 621, 783
MunI	CAATTG	2 cut(s)	104, 557
MwoI	GCNNNNNNNGC	1 cut(s)	437
NcoI	CCATGG	2 cut(s)	69, 874
NdeII	GATC	2 cut(s)	18, 157
NlaIII	CATG	5 cut(s)	73, 86, 776, 847, 878
NlaIV	GGNNCC	2 cut(s)	136, 648
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	808
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	728, 752, 881, 930
PkrI	GCNGC	5 cut(s)	430, 478, 550, 598, 683
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	136, 648
PspPI	GGNCC	2 cut(s)	35, 135
PstI	CTGCAG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	18
SaqAI	TTAA	5 cut(s)	218, 386, 485, 621, 783
SatI	GCNGC	5 cut(s)	429, 477, 549, 597, 682
Sau3AI	GATC	2 cut(s)	18, 157
Sau96I	GGNCC	2 cut(s)	35, 135
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	2 cut(s)	583, 601
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	2 cut(s)	35, 135
SmlI	CTYRAG	2 cut(s)	398, 893
SmoI	CTYRAG	2 cut(s)	398, 893
Sse9I	AATT	6 cut(s)	48, 104, 153, 557, 739, 833
SspMI	CTAG	1 cut(s)	564
StyI	CCWWGG	3 cut(s)	69, 650, 874
TaaI	ACNGT	2 cut(s)	130, 347
TasI	AATT	6 cut(s)	48, 104, 153, 557, 739, 833
TfiI	GAWTC	4 cut(s)	728, 752, 881, 930
Tru1I	TTAA	5 cut(s)	218, 386, 485, 621, 783
Tru9I	TTAA	5 cut(s)	218, 386, 485, 621, 783
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	5 cut(s)	428, 476, 548, 596, 681
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	35, 135
XapI	RAATTY	2 cut(s)	48, 833
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.