Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014636

Physical Location & Seq

Genomic Coordinates Reverse (-)

24987713 .. 24988249

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG253100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGAGGGCATCCTAAAGTGATAAATTTGGACTCAGATTGTGATAAAGAAGTGGGGGATGGTGTGCAGCAGCAAAGTCAAGGCACCTTTACCTGTCTTAGTGACTTGGTGCCTGACCTGTTTGCTTTACAAGGTGAGGGAATCCAAAGTGAGCTGAGGCAGGGGCAGAATAGTAATAGGGGCTATGTGGATGGTTGTCCAGGGGTATTTAGTGGCTTTTACAATACATTTATTCCTCACCCTCATGAAAAACATTGTATAATGAGGCCAAAGGGAAGGATTGAAGACAAGGCTGCAGAAAGTACAAAAGAAGGAGGACCAGTTCAAGGGGATGTGGAAGCAGAAGGCACTGTTAAACACACTGCAGCAACAACACCAGAAAAAGAGCAATTGGACCTAATACAAGAAGAAGCTGTCCCAATTGTGCAAGAAGCTGAAGTTACTGAAGCAAAGGTTGAAGAAACAGCTGTACCAAGTGTTGACCAAGAGTTGAAGAAGAAGCTGTGCCAATTGTTGAAGAAGAAGTTGTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.4

Weight (kDa)

4.9

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11351
rosa_laevigata	RLG00000006487
rosa_multiflora	Rmu_sc0000073.1_g000011 Rmu_sc0004670.1_g000011 Rmu_ssc0000438.1_g000045
rosa_roxburghii	Rroxscaffold_4G00308140
rosa_rugosa	Rorug03G0261300
rosa_samantha	Rh2AG374900 Rh2AG429000 Rh2CG414600 Rh2CG442800 Rh3DG234800 Rh3DG253100 Rh4BG360500 Rh4DG248400 Rh6CG186500 Rh6DG178100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 109
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	2 cut(s)	456, 465
AfaI	GTAC	2 cut(s)	304, 471
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	6 cut(s)	284, 326, 458, 493, 517, 532
AjnI	CCWGG	1 cut(s)	199
AloI	GAACNNNNNNTCC	2 cut(s)	306, 338
AluBI	AGCT	5 cut(s)	154, 413, 434, 467, 502
AluI	AGCT	5 cut(s)	154, 413, 434, 467, 502
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	4 cut(s)	67, 70, 293, 365
ApoI	RAATTY	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	317, 394
AsuHPI	GGTGA	2 cut(s)	146, 230
AvaII	GGWCC	2 cut(s)	317, 394
BaeI	ACNNNNGTAYC	2 cut(s)	453, 486
BanI	GGYRCC	2 cut(s)	83, 109
BbsI	GAAGAC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	4 cut(s)	79, 82, 280, 377
BccI	CCATC	2 cut(s)	53, 185
BciT130I	CCWGG	1 cut(s)	201
BfmI	CTRYAG	2 cut(s)	294, 363
BisI	GCNGC	4 cut(s)	68, 71, 294, 366
BlsI	GCNGC	4 cut(s)	69, 72, 295, 367
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	2 cut(s)	317, 394
BmgT120I	GGNCC	2 cut(s)	317, 394
BmiI	GGNNCC	2 cut(s)	85, 111
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	4 cut(s)	10, 64, 196, 337
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	48, 146
BseNI	ACTGG	1 cut(s)	320
BseXI	GCAGC	4 cut(s)	79, 82, 280, 377
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	268
BshNI	GGYRCC	2 cut(s)	83, 109
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	47, 147
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	85, 111
BspMAI	CTGCAG	2 cut(s)	298, 367
BspT107I	GGYRCC	2 cut(s)	83, 109
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	352
BstDEI	CTNAG	3 cut(s)	34, 98, 155
BstF5I	GGATG	4 cut(s)	10, 64, 196, 337
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	2 cut(s)	294, 363
BstV1I	GCAGC	4 cut(s)	79, 82, 280, 377
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	4 cut(s)	10, 64, 196, 337
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	348, 360
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	317, 394
Csp6I	GTAC	2 cut(s)	303, 470
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	9 cut(s)	154, 183, 216, 268, 293, 413, 434, 467, 502
CviKI_1	RGCY	9 cut(s)	154, 183, 216, 268, 293, 413, 434, 467, 502
CviQI	GTAC	2 cut(s)	303, 470
DdeI	CTNAG	3 cut(s)	34, 98, 155
Eco47I	GGWCC	2 cut(s)	317, 394
Eco57I	CTGAAG	2 cut(s)	456, 465
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	248
FaiI	YATR	3 cut(s)	186, 246, 260
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	68, 71, 294, 366
FokI	GGATG	3 cut(s)	71, 203, 344
Fsp4HI	GCNGC	4 cut(s)	68, 71, 294, 366
GluI	GCNGC	4 cut(s)	68, 71, 294, 366
HaeIII	GGCC	1 cut(s)	268
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	2 cut(s)	32, 141
HphI	GGTGA	2 cut(s)	146, 230
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	3 cut(s)	270, 305, 338
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	4 cut(s)	67, 296, 365, 427
HpyF3I	CTNAG	3 cut(s)	34, 98, 155
Hsp92II	CATG	1 cut(s)	248
LpnPI	CCDG	8 cut(s)	106, 126, 131, 146, 186, 213, 333, 390
Lsp1109I	GCAGC	4 cut(s)	79, 82, 280, 377
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	101, 439
MboII	GAAGA	7 cut(s)	296, 419, 470, 505, 508, 529, 532
MfeI	CAATTG	3 cut(s)	389, 420, 509
MluCI	AATT	4 cut(s)	25, 389, 420, 509
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	6 cut(s)	130, 150, 246, 252, 258, 308
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	3 cut(s)	389, 420, 509
MvaI	CCWGG	1 cut(s)	201
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	85, 111
NmuCI	GTSAC	1 cut(s)	101
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	69, 72, 295, 367
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	85, 111
PspPI	GGNCC	2 cut(s)	317, 394
PstI	CTGCAG	2 cut(s)	298, 367
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	2 cut(s)	304, 471
RsaNI	GTAC	2 cut(s)	303, 470
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	4 cut(s)	68, 71, 294, 366
Sau96I	GGNCC	2 cut(s)	317, 394
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	201
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	2 cut(s)	294, 363
SinI	GGWCC	2 cut(s)	317, 394
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	25, 389, 420, 509
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	352
TasI	AATT	4 cut(s)	25, 389, 420, 509
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	141
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	355, 367
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	4 cut(s)	67, 70, 293, 365
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	355, 367
VpaK11BI	GGWCC	2 cut(s)	317, 394
XapI	RAATTY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.