Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014636

Physical Location & Seq

Genomic Coordinates Reverse (-)

63661749 .. 63666330

Gene Structure 4582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG429000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGAGGGCATCCTGAAGTGATAAAGTTGGACTCAGATAGTGATAAAGAAGTAGGGGATGGTGTGCAGCAGCAAAGTCAAGGCACCTTTACCGGTCTTAGTAACCTGGTGCCTAACCTGTTTGCTTCACAAGGTGAGGGAATCCAAAGTGAGGGAATCCAAGGTGAGCTGAGGCCAAAGGGAAGGCCTGAAGACAAGGCTGCAGAAAGTACAAAAGAAGGAGGACCAGTTCAAGGGGCTGTGGAAGTAGAAGGCACTGTTAAAAACGCTGCAGCAACAACACCAGCAAAAGAGCAATTGGACCCAATTGTGCAAGAAGTTACTGAACCAATTGTGCAAGAAGCTGAAGTTACTAAACCAAGAGTTGAAGAAGAAGCTGTACCAATTGTTGAAGAAGAAGTTTTTGAACCAAGAGTTGAAGAAGAAGCTGGGGTTAAGGAATCTGAACCAACTGAACAGGCTACTTGTTCTAAGAAGGGTCCAAGAGGAGAGGACAGCAGGGGAGGCAAGAAGAAAAGGTTCAGTGAGGTAGATAAGGGTAAGAAGGTTGCACCTGACACTCAAGCCAAGGGGAAGAAGGGTAAACCTGCTGCCAAGAAGAAGGGCAGACAAACAAAGGAGCCAAGGTACAGAACGAGAAACAATGGGGCAAAGGAATATGAGCAGGTAGATGAAAGTGGATCAAGCTCAGATGGCTCTGACTTCTTTGTGGACAGTGACTATGACCAAGCCGATGAGGAAGATGATGCTCAGTTTGAGGAACATGTGTCCAATCCAGAAGATGTTGAAGAGTTTGAAGACATGGGCTATAGGGGTGAATGCAGTGATGATGGAGGTGAAACAGAAGAGGAGCTTGATAGCTTGAGAGGATCTGAAACTGAAGAAGATGAGGAAGGGAATCCACTCCCTGTAAACTCTTGGAGAGGCATTAAACTTAAATCTTGGAATAGAAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

34.95

Weight (kDa)

4.55

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11351
rosa_laevigata	RLG00000006487
rosa_multiflora	Rmu_sc0000073.1_g000011 Rmu_sc0004670.1_g000011 Rmu_ssc0000438.1_g000045
rosa_roxburghii	Rroxscaffold_4G00308140
rosa_rugosa	Rorug03G0261300
rosa_samantha	Rh2AG374900 Rh2AG429000 Rh2CG414600 Rh2CG442800 Rh3DG234800 Rh3DG253100 Rh4BG360500 Rh4DG248400 Rh6CG186500 Rh6DG178100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	595, 655
AccB1I	GGYRCC	2 cut(s)	83, 109
AclWI	GGATC	2 cut(s)	688, 877
AcuI	CTGAAG	4 cut(s)	36, 210, 366, 900
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	3 cut(s)	211, 381, 629
AfiI	CCNNNNNNNGG	2 cut(s)	151, 233
AflIII	ACRYGT	1 cut(s)	763
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	7 cut(s)	233, 368, 392, 407, 419, 788, 797
AjnI	CCWGG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	7 cut(s)	169, 344, 377, 428, 687, 853, 861
AluI	AGCT	7 cut(s)	169, 344, 377, 428, 687, 853, 861
AlwI	GGATC	2 cut(s)	688, 877
AoxI	GGCC	2 cut(s)	173, 185
ApeKI	GCWGC	6 cut(s)	67, 70, 200, 269, 272, 590
AsiGI	ACCGGT	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	518
AspS9I	GGNCC	3 cut(s)	224, 301, 479
AsuHPI	GGTGA	4 cut(s)	146, 176, 827, 848
AvaII	GGWCC	3 cut(s)	224, 301, 479
BanI	GGYRCC	2 cut(s)	83, 109
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BbsI	GAAGAC	2 cut(s)	198, 804
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	6 cut(s)	79, 82, 187, 256, 284, 577
BccI	CCATC	3 cut(s)	53, 686, 824
BciT130I	CCWGG	1 cut(s)	107
BfmI	CTRYAG	3 cut(s)	201, 270, 808
BfuAI	ACCTGC	2 cut(s)	595, 655
BisI	GCNGC	6 cut(s)	68, 71, 201, 270, 273, 591
BlsI	GCNGC	6 cut(s)	69, 72, 202, 271, 274, 592
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	3 cut(s)	224, 301, 479
BmgT120I	GGNCC	3 cut(s)	224, 301, 479
BmiI	GGNNCC	5 cut(s)	85, 111, 303, 480, 621
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	19, 736
BpiI	GAAGAC	2 cut(s)	198, 804
Bpu10I	CCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	546, 883
BsaJI	CCNNGG	3 cut(s)	160, 567, 623
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	4 cut(s)	213, 243, 611, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 233
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	160, 567, 623
BseGI	GGATG	2 cut(s)	10, 64
BseLI	CCNNNNNNNGG	2 cut(s)	151, 233
BseMII	CTCAG	4 cut(s)	48, 161, 702, 764
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	501, 863
BseXI	GCAGC	6 cut(s)	79, 82, 187, 256, 284, 577
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	175, 187
BshNI	GGYRCC	2 cut(s)	83, 109
BshTI	ACCGGT	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	151, 233
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	175, 187
Bsp143I	GATC	2 cut(s)	680, 869
BspANI	GGCC	2 cut(s)	175, 187
BspCNI	CTCAG	4 cut(s)	47, 162, 701, 763
BspLI	GGNNCC	5 cut(s)	85, 111, 303, 480, 621
BspMAI	CTGCAG	2 cut(s)	205, 274
BspMI	ACCTGC	2 cut(s)	595, 655
BspPI	GGATC	2 cut(s)	688, 877
BspT107I	GGYRCC	2 cut(s)	83, 109
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	160, 567, 623
BssMI	GATC	2 cut(s)	680, 869
BssT1I	CCWWGG	3 cut(s)	160, 567, 623
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	259, 716
Bst6I	CTCTTC	2 cut(s)	783, 840
BstDEI	CTNAG	6 cut(s)	34, 98, 170, 471, 688, 750
BstF5I	GGATG	2 cut(s)	10, 64
BstKTI	GATC	2 cut(s)	683, 872
BstMBI	GATC	2 cut(s)	680, 869
BstMWI	GCNNNNNNNGC	2 cut(s)	504, 693
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	3 cut(s)	201, 270, 808
BstV1I	GCAGC	6 cut(s)	79, 82, 187, 256, 284, 577
BstV2I	GAAGAC	2 cut(s)	198, 804
BstX2I	RGATCY	1 cut(s)	869
BstYI	RGATCY	1 cut(s)	869
BsuRI	GGCC	2 cut(s)	175, 187
BtsCI	GGATG	2 cut(s)	10, 64
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	4 cut(s)	255, 529, 721, 829
BveI	ACCTGC	2 cut(s)	595, 655
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	224, 301, 479
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	210, 380, 628
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	2 cut(s)	764, 802
CviQI	GTAC	3 cut(s)	210, 380, 628
DdeI	CTNAG	6 cut(s)	34, 98, 170, 471, 688, 750
DpnI	GATC	2 cut(s)	682, 871
DpnII	GATC	2 cut(s)	680, 869
DraIII	CACNNNGTG	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	783, 840
EarI	CTCTTC	2 cut(s)	783, 840
Eco130I	CCWWGG	3 cut(s)	160, 567, 623
Eco147I	AGGCCT	1 cut(s)	187
Eco47I	GGWCC	3 cut(s)	224, 301, 479
Eco57I	CTGAAG	4 cut(s)	36, 210, 366, 900
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	3 cut(s)	160, 567, 623
ErhI	CCWWGG	3 cut(s)	160, 567, 623
FaeI	CATG	2 cut(s)	767, 805
FaiI	YATR	5 cut(s)	660, 723, 765, 803, 810
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FatI	CATG	2 cut(s)	763, 801
Fnu4HI	GCNGC	6 cut(s)	68, 71, 201, 270, 273, 591
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	6 cut(s)	68, 71, 201, 270, 273, 591
GluI	GCNGC	6 cut(s)	68, 71, 201, 270, 273, 591
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	175, 187
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	767, 805
HinfI	GANTC	5 cut(s)	32, 141, 156, 440, 898
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	4 cut(s)	146, 176, 827, 848
Hpy166II	GTNNAC	3 cut(s)	584, 712, 913
Hpy188I	TCNGA	5 cut(s)	37, 445, 691, 700, 874
Hpy188III	TCNNGA	2 cut(s)	14, 776
Hpy8I	GTNNAC	3 cut(s)	584, 712, 913
HpyAV	CCTTC	9 cut(s)	177, 212, 245, 469, 538, 571, 595, 887, 945
HpyCH4III	ACNGT	2 cut(s)	259, 716
HpyCH4V	TGCA	7 cut(s)	67, 203, 272, 313, 337, 551, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	504, 693
HpyF3I	CTNAG	6 cut(s)	34, 98, 170, 471, 688, 750
Hsp92II	CATG	2 cut(s)	767, 805
Kzo9I	GATC	2 cut(s)	680, 869
LmnI	GCTCC	2 cut(s)	619, 850
Lsp1109I	GCAGC	6 cut(s)	79, 82, 187, 256, 284, 577
LweI	GCATC	2 cut(s)	19, 736
MabI	ACCWGGT	1 cut(s)	105
MaeIII	GTNAC	4 cut(s)	101, 319, 349, 716
MalI	GATC	2 cut(s)	682, 871
MboI	GATC	2 cut(s)	680, 869
MfeI	CAATTG	4 cut(s)	296, 306, 330, 384
MflI	RGATCY	1 cut(s)	869
MluCI	AATT	4 cut(s)	296, 306, 330, 384
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	4 cut(s)	261, 435, 930, 936
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	4 cut(s)	296, 306, 330, 384
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	504, 693
NdeII	GATC	2 cut(s)	680, 869
NlaIII	CATG	2 cut(s)	767, 805
NlaIV	GGNNCC	5 cut(s)	85, 111, 303, 480, 621
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	767
PceI	AGGCCT	1 cut(s)	187
PciI	ACATGT	1 cut(s)	763
PctI	GAATGC	1 cut(s)	824
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	4 cut(s)	141, 156, 440, 898
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	6 cut(s)	69, 72, 202, 271, 274, 592
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PscI	ACATGT	1 cut(s)	763
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	5 cut(s)	85, 111, 303, 480, 621
PspPI	GGNCC	3 cut(s)	224, 301, 479
PstI	CTGCAG	2 cut(s)	205, 274
PsuI	RGATCY	1 cut(s)	869
RsaI	GTAC	3 cut(s)	211, 381, 629
RsaNI	GTAC	3 cut(s)	210, 380, 628
SaqAI	TTAA	4 cut(s)	261, 435, 930, 936
SatI	GCNGC	6 cut(s)	68, 71, 201, 270, 273, 591
Sau3AI	GATC	2 cut(s)	680, 869
Sau96I	GGNCC	3 cut(s)	224, 301, 479
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	107
SexAI	ACCWGGT	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	19, 736
SfcI	CTRYAG	3 cut(s)	201, 270, 808
SinI	GGWCC	3 cut(s)	224, 301, 479
SmlI	CTYRAG	2 cut(s)	561, 862
SmoI	CTYRAG	2 cut(s)	561, 862
Sse9I	AATT	4 cut(s)	296, 306, 330, 384
SseBI	AGGCCT	1 cut(s)	187
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	3 cut(s)	160, 567, 623
TaaI	ACNGT	2 cut(s)	259, 716
TasI	AATT	4 cut(s)	296, 306, 330, 384
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	4 cut(s)	141, 156, 440, 898
Tru1I	TTAA	4 cut(s)	261, 435, 930, 936
Tru9I	TTAA	4 cut(s)	261, 435, 930, 936
TscAI	CASTG	4 cut(s)	262, 529, 721, 829
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	6 cut(s)	67, 70, 200, 269, 272, 590
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	1 cut(s)	687
TspRI	CASTG	4 cut(s)	262, 529, 721, 829
VpaK11BI	GGWCC	3 cut(s)	224, 301, 479
XceI	RCATGY	1 cut(s)	767
XmnI	GAANNNNTTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.