Rh6DG178100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014636
Physical Location & Seq
Reverse (-)
31365232 .. 31365630
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG178100.1

Sequence Viewer

Length: 399 bp
ATGTTTGCATTTGAGGCTGAGAAGAGCAAGAAGGGTAGACACGCTGCTAAGAAGTGGGGGAGACAAACTAAGGAGCCAAGGTACAGCACCATGAACAAAAGGGAAAAGGTTTATGAGCAGGTAGAGAACACTGATTCAAGCTCAGATGGTTATGATTTCTATGTGGACAATGATTATGATTTAGTTGATTTTGAAAATGATGTTCAATTTGAAGAAAAGGTGGAAAATCTAAAGGTTGTTGAAGAGTTTGAAGACATGGAATTCAAGGGTGAATGCAGTGATCATGGTGGTGAATCAAATGAAGATCCAGAAAGCTTGAGAGAATTTGAGACTGAAGAAGATGAAGAAGGGAATCCACTCCCCATGCCCACATGGAGAAGTATTAAGTTGAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.63

Weight (kDa)

4.47

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 37
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 2 cut(s) 260, 323
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 8 cut(s) 138, 194, 206, 212, 242, 251, 265, 391
AluBI AGCT 2 cut(s) 141, 315
AluI AGCT 2 cut(s) 141, 315
Alw26I GTCTC 2 cut(s) 55, 323
AlwI GGATC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 2 cut(s) 260, 323
AsuHPI GGTGA 2 cut(s) 281, 302
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 140
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 55, 323
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
BseDI CCNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 9, 156
BseXI GCAGC 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 55, 323
BsmI GAATGC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 280, 304
BspCNI CTCAG 2 cut(s) 10, 155
BspLI GGNNCC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 299
BspQI GCTCTTC 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 2 cut(s) 280, 304
BssT1I CCWWGG 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 17, 237
BstDEI CTNAG 4 cut(s) 18, 48, 69, 142
BstKTI GATC 2 cut(s) 283, 307
BstMAI GTCTC 2 cut(s) 55, 323
BstMBI GATC 2 cut(s) 280, 304
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 2 cut(s) 129, 283
BveI ACCTGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 82
CviAII CATG 5 cut(s) 91, 256, 284, 364, 372
CviJI RGCY 4 cut(s) 17, 76, 141, 315
CviKI_1 RGCY 4 cut(s) 17, 76, 141, 315
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 4 cut(s) 18, 48, 69, 142
DpnI GATC 2 cut(s) 282, 306
DpnII GATC 2 cut(s) 280, 304
Eam1104I CTCTTC 2 cut(s) 17, 237
EarI CTCTTC 2 cut(s) 17, 237
Eco130I CCWWGG 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 5 cut(s) 94, 259, 287, 367, 375
FaiI YATR 9 cut(s) 92, 114, 153, 162, 177, 257, 285, 365, 373
FatI CATG 5 cut(s) 90, 255, 283, 363, 371
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
Hin1II CATG 5 cut(s) 94, 259, 287, 367, 375
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 3 cut(s) 134, 293, 352
HphI GGTGA 2 cut(s) 281, 302
Hpy166II GTNNAC 2 cut(s) 38, 166
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 2 cut(s) 38, 166
HpyAV CCTTC 2 cut(s) 25, 341
HpyCH4V TGCA 2 cut(s) 8, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 4 cut(s) 18, 48, 69, 142
Hsp92II CATG 5 cut(s) 94, 259, 287, 367, 375
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 280, 304
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 2 cut(s) 104, 321
Lsp1109I GCAGC 1 cut(s) 31
MalI GATC 2 cut(s) 282, 306
MboI GATC 2 cut(s) 280, 304
MboII GAAGA 8 cut(s) 34, 224, 254, 263, 314, 347, 350, 356
MflI RGATCY 1 cut(s) 304
MluCI AATT 3 cut(s) 206, 260, 323
MnlI CCTC 1 cut(s) 7
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 2 cut(s) 280, 304
NlaIII CATG 5 cut(s) 94, 259, 287, 367, 375
NlaIV GGNNCC 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 17
PctI GAATGC 1 cut(s) 278
PfeI GAWTC 3 cut(s) 134, 293, 352
PkrI GCNGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 75
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 280, 304
SetI ASST 7 cut(s) 83, 111, 123, 143, 222, 237, 317
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 3 cut(s) 206, 260, 323
StyI CCWWGG 1 cut(s) 77
TasI AATT 3 cut(s) 206, 260, 323
TfiI GAWTC 3 cut(s) 134, 293, 352
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 2 cut(s) 136, 283
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 107, 315, 357
TspRI CASTG 2 cut(s) 136, 283
XapI RAATTY 2 cut(s) 260, 323
XmiI GTMKAC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.