Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014636

Physical Location & Seq

Genomic Coordinates Reverse (-)

46130537 .. 46131397

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG248400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAGGGTGGTTCAGGTGGGTGAGGGCTTAAATGTGGGAAGAGAAGAAGGTGGAGTAAATGTTGGGGTTAGACCAAGTCAAAGCACATTTGCAGGTCTTTCTGATATTCTGCCAGATGTGTTGGGGTCCCAAGCAAGTATAGGGCAGGAGGGACACAGGAGGAAAAGTGGTGGAACTGAGGGGCATAAGGGTAACTTCGGAAAGGTCACTACTAAACCTAAAAGGGTGAAGCATTGTGCCAAAAGGAGTTGGCCTGCCTCTGCCACAGCTACTTTAAACAAGAAGCTTGACGATATAGAAAGGAGAGAAAGAGAGGCTGCTGAGAAGGTTGAAAAAGAAGCTTGGAAGAGGGCTGAAAGAGAGGCAGCCGAGTTAAGAGAAAGACAAGCTACTATTGAGGAACAAGAGGAGGCTCAGAGATTGAGAGAAAGGGAGGCTGCCGAGCAATTAGCTAGGGAGGAGGCAGAGAAGAGAGAACAAGAGGCTGTAGAGAAAAGGGCAAGGGATGCTGTTGCTGTTAGGGAGAAATTGGCAGAAGAGTTTAGGGAGAGATTACAACAGTCACAGCAAAGCAAGAAAGGGAAAAGCAAGGAGGATGCTGTATCTGATAAGGGAAAAAAACCAGTTCAGGCTACAAAGGTTGACAAGAGGGGGAAGAAACCAAAAGATCCAAGGTATAACACAAGAAGGAAAGGGAGCAGCAACAATGCAAGAACAGAGGAGAGGGTAGTTGAGGATGATGAGACGGATTCAGGATCTGATTTCTATGTTGATTCAGATTATGATTTTGAGCATGATGAGTTTGATGATGCAGACTTTGAAGAAAATGTCACACAGCCAAGGGTTGTTGAGGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

32.47

Weight (kDa)

5.88

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11351
rosa_laevigata	RLG00000006487
rosa_multiflora	Rmu_sc0000073.1_g000011 Rmu_sc0004670.1_g000011 Rmu_ssc0000438.1_g000045
rosa_roxburghii	Rroxscaffold_4G00308140
rosa_rugosa	Rorug03G0261300
rosa_samantha	Rh2AG374900 Rh2AG429000 Rh2CG414600 Rh2CG442800 Rh3DG234800 Rh3DG253100 Rh4BG360500 Rh4DG248400 Rh6CG186500 Rh6DG178100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	662, 763
AcsI	RAATTY	1 cut(s)	854
AgsI	TTSAA	2 cut(s)	332, 821
AluBI	AGCT	5 cut(s)	269, 286, 341, 389, 452
AluI	AGCT	5 cut(s)	269, 286, 341, 389, 452
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	2 cut(s)	662, 763
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	4 cut(s)	317, 365, 437, 699
ApoI	RAATTY	1 cut(s)	854
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	32, 238
AvaII	GGWCC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	304, 377, 424, 711
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	486
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	4 cut(s)	318, 366, 438, 700
BlsI	GCNGC	4 cut(s)	319, 367, 439, 701
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	127, 128
BmsI	GCATC	3 cut(s)	496, 586, 799
BsaJI	CCNNGG	2 cut(s)	671, 839
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 151, 181
Bse1I	ACTGG	1 cut(s)	623
BseDI	CCNNGG	2 cut(s)	671, 839
BseGI	GGATG	3 cut(s)	511, 601, 742
BseMII	CTCAG	3 cut(s)	168, 312, 428
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	3 cut(s)	422, 473, 734
BseXI	GCAGC	4 cut(s)	304, 377, 424, 711
BshFI	GGCC	1 cut(s)	253
BslFI	GGGAC	2 cut(s)	112, 165
BsmAI	GTCTC	1 cut(s)	737
BsmBI	CGTCTC	1 cut(s)	737
BsmFI	GGGAC	2 cut(s)	112, 165
BsnI	GGCC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	667, 755
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	3 cut(s)	169, 313, 427
BspLI	GGNNCC	2 cut(s)	127, 128
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	662, 763
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	671, 839
BssMI	GATC	2 cut(s)	667, 755
BssT1I	CCWWGG	2 cut(s)	671, 839
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	4 cut(s)	34, 341, 464, 531
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	177, 321, 414
BstF5I	GGATG	3 cut(s)	511, 601, 742
BstKTI	GATC	2 cut(s)	670, 758
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	2 cut(s)	667, 755
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	4 cut(s)	304, 377, 424, 711
BstX2I	RGATCY	2 cut(s)	667, 755
BstYI	RGATCY	2 cut(s)	667, 755
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	511, 601, 742
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	758
Cfr13I	GGNCC	1 cut(s)	126
CviAII	CATG	1 cut(s)	794
DdeI	CTNAG	3 cut(s)	177, 321, 414
DpnI	GATC	2 cut(s)	669, 757
DpnII	GATC	2 cut(s)	667, 755
DraI	TTTAAA	1 cut(s)	276
Eam1104I	CTCTTC	4 cut(s)	34, 341, 464, 531
EarI	CTCTTC	4 cut(s)	34, 341, 464, 531
Eco130I	CCWWGG	2 cut(s)	671, 839
Eco47I	GGWCC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	126
EcoT14I	CCWWGG	2 cut(s)	671, 839
ErhI	CCWWGG	2 cut(s)	671, 839
Esp3I	CGTCTC	1 cut(s)	737
FaeI	CATG	1 cut(s)	797
FaiI	YATR	7 cut(s)	140, 186, 296, 678, 768, 783, 795
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	2 cut(s)	112, 165
FatI	CATG	1 cut(s)	793
Fnu4HI	GCNGC	4 cut(s)	318, 366, 438, 700
FokI	GGATG	3 cut(s)	518, 608, 749
Fsp4HI	GCNGC	4 cut(s)	318, 366, 438, 700
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	4 cut(s)	318, 366, 438, 700
HaeIII	GGCC	1 cut(s)	253
Hin1II	CATG	1 cut(s)	797
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	2 cut(s)	284, 339
HinfI	GANTC	2 cut(s)	749, 773
HphI	GGTGA	2 cut(s)	32, 238
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	6 cut(s)	103, 200, 417, 607, 760, 778
Hpy188III	TCNNGA	1 cut(s)	753
Hpy8I	GTNNAC	1 cut(s)	643
HpyAV	CCTTC	3 cut(s)	41, 319, 681
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	92, 710, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	3 cut(s)	177, 321, 414
Hsp92II	CATG	1 cut(s)	797
KflI	GGGWCCC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	667, 755
LmnI	GCTCC	1 cut(s)	696
LpnPI	CCDG	8 cut(s)	78, 126, 131, 142, 267, 614, 636, 738
Lsp1109I	GCAGC	4 cut(s)	304, 377, 424, 711
LweI	GCATC	3 cut(s)	496, 586, 799
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	4 cut(s)	191, 205, 561, 829
MalI	GATC	2 cut(s)	669, 757
MboI	GATC	2 cut(s)	667, 755
MboII	GAAGA	7 cut(s)	51, 56, 358, 481, 548, 667, 833
MflI	RGATCY	2 cut(s)	667, 755
MluCI	AATT	3 cut(s)	446, 527, 854
MseI	TTAA	3 cut(s)	29, 275, 374
MwoI	GCNNNNNNNGC	1 cut(s)	506
NdeII	GATC	2 cut(s)	667, 755
NlaIII	CATG	1 cut(s)	797
NlaIV	GGNNCC	2 cut(s)	127, 128
NmeAIII	GCCGAG	2 cut(s)	394, 466
NmuCI	GTSAC	3 cut(s)	205, 561, 829
PfeI	GAWTC	2 cut(s)	749, 773
PflFI	GACNNNGTC	1 cut(s)	75
PkrI	GCNGC	4 cut(s)	319, 367, 439, 701
PpuMI	RGGWCCY	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	127, 128
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	2 cut(s)	667, 755
PsyI	GACNNNGTC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	29, 275, 374
SatI	GCNGC	4 cut(s)	318, 366, 438, 700
Sau3AI	GATC	2 cut(s)	667, 755
Sau96I	GGNCC	1 cut(s)	126
SfaNI	GCATC	3 cut(s)	496, 586, 799
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	126
Sse9I	AATT	3 cut(s)	446, 527, 854
SspMI	CTAG	1 cut(s)	453
StyI	CCWWGG	2 cut(s)	671, 839
TaaI	ACNGT	1 cut(s)	561
TasI	AATT	3 cut(s)	446, 527, 854
TfiI	GAWTC	2 cut(s)	749, 773
Tru1I	TTAA	3 cut(s)	29, 275, 374
Tru9I	TTAA	3 cut(s)	29, 275, 374
TseFI	GTSAC	3 cut(s)	205, 561, 829
TseI	GCWGC	4 cut(s)	317, 365, 437, 699
Tsp45I	GTSAC	3 cut(s)	205, 561, 829
TspGWI	ACGGA	1 cut(s)	761
Tth111I	GACNNNGTC	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	854
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.