Rorug03G0261300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014636
Physical Location & Seq
Reverse (-)
25155564 .. 25156062
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0261300.1

Sequence Viewer

Length: 420 bp
ATGTTTTCTAAAGTGGGAAAATATACTGTATCAAGGAGAGTGACAGACATTCTGTGGTTCTCTGTTCAGGTGCTTCGTCTTTTGGTCAACGTGAATCTAAGGCTTCCACATGTTGATTACTGCAGTATCTGCCAGTGTCTTATGTTCTTGGATGATCCAGAACGTGTTGCAAGAATTTTGCAACAGCTTCTGAGATCGGATAATATGGATGATAGACTGAGAGCATTTCAAATAGCCTTTGATCTATATGAAAATGATAACCAGCAGTTTCTCGTAAATATGATTAATTGCAACGTTCAGAGCCCCTATGAAGTTCCACAGGAGATGTATTGTATGGAGCTGGATAAGATTAGAAAGATTTTGTGTGGAAAGATACCAGTAGACTTGGGTTTAAGTTTCTTGCATTCAAATAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.38

Weight (kDa)

6.7

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN2_N PF21505 12 - 138 1.1e-19 26S proteasome subunit RPN2, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 381
AclI AACGTT 1 cut(s) 294
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 174
AflIII ACRYGT 2 cut(s) 109, 163
AgsI TTSAA 2 cut(s) 230, 408
AluBI AGCT 2 cut(s) 187, 340
AluI AGCT 2 cut(s) 187, 340
AlwI GGATC 1 cut(s) 149
AlwNI CAGNNNCTG 2 cut(s) 129, 190
ApoI RAATTY 1 cut(s) 174
AseI ATTAAT 1 cut(s) 285
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BanII GRGCYC 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 133, 377
BseGI GGATG 2 cut(s) 157, 214
BseMII CTCAG 2 cut(s) 182, 209
BseNI ACTGG 2 cut(s) 133, 377
BsmI GAATGC 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 3 cut(s) 154, 194, 241
BspCNI CTCAG 2 cut(s) 183, 210
BspMAI CTGCAG 1 cut(s) 125
BspPI GGATC 1 cut(s) 149
BsrI ACTGG 2 cut(s) 133, 377
BssMI GATC 3 cut(s) 154, 194, 241
Bst4CI ACNGT 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 98, 191, 218
BstF5I GGATG 2 cut(s) 157, 214
BstKTI GATC 3 cut(s) 157, 197, 244
BstMBI GATC 3 cut(s) 154, 194, 241
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 157, 214
BtsIMutI CAGTG 1 cut(s) 140
CaiI CAGNNNCTG 2 cut(s) 129, 190
CviAII CATG 1 cut(s) 110
CviJI RGCY 5 cut(s) 103, 187, 236, 303, 340
CviKI_1 RGCY 5 cut(s) 103, 187, 236, 303, 340
DdeI CTNAG 3 cut(s) 98, 191, 218
DpnI GATC 3 cut(s) 156, 196, 243
DpnII GATC 3 cut(s) 154, 194, 241
Eco24I GRGCYC 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 305
FaeI CATG 1 cut(s) 113
FaiI YATR 9 cut(s) 24, 111, 143, 206, 247, 249, 281, 309, 335
FatI CATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 381
FokI GGATG 2 cut(s) 164, 221
FriOI GRGCYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 113
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 88, 382
Hpy188I TCNGA 3 cut(s) 192, 199, 300
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 88, 382
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 3 cut(s) 90, 163, 294
HpyCH4V TGCA 5 cut(s) 123, 170, 181, 291, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 3 cut(s) 98, 191, 218
HpySE526I ACGT 3 cut(s) 90, 163, 294
Hsp92II CATG 1 cut(s) 113
Kzo9I GATC 3 cut(s) 154, 194, 241
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 7 cut(s) 53, 146, 171, 275, 305, 326, 390
MaeII ACGT 3 cut(s) 90, 163, 294
MaeIII GTNAC 1 cut(s) 40
MalI GATC 3 cut(s) 156, 196, 243
MboI GATC 3 cut(s) 154, 194, 241
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 2 cut(s) 174, 286
MseI TTAA 2 cut(s) 285, 392
Mva1269I GAATGC 1 cut(s) 403
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 3 cut(s) 154, 194, 241
NlaIII CATG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 40
NspI RCATGY 1 cut(s) 113
PciI ACATGT 1 cut(s) 109
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 94
PscI ACATGT 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 285
Psp1406I AACGTT 1 cut(s) 294
PstI CTGCAG 1 cut(s) 125
PstNI CAGNNNCTG 2 cut(s) 129, 190
SaqAI TTAA 2 cut(s) 285, 392
Sau3AI GATC 3 cut(s) 154, 194, 241
SduI GDGCHC 1 cut(s) 305
SetI ASST 6 cut(s) 72, 93, 166, 189, 297, 342
SfcI CTRYAG 1 cut(s) 121
Sse9I AATT 2 cut(s) 174, 286
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 3 cut(s) 93, 166, 297
TasI AATT 2 cut(s) 174, 286
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 285, 392
Tru9I TTAA 2 cut(s) 285, 392
TscAI CASTG 1 cut(s) 140
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 264, 324
TspRI CASTG 1 cut(s) 140
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 1 cut(s) 174
XceI RCATGY 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.