Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010221

Physical Location & Seq

Genomic Coordinates Reverse (-)

6705413 .. 6706660

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGGAGTTCTTGTTCTGCTATTCACAGTCTCAAGTCTGCTCCTTCTAGCAGAATCCAAGACTTTCTGGGGAGACACCCAAGTTCTGAAGCAGCTGAAGAACACACTAGACCCCAACTCAGTTGCTCAAGGCTCCTGCATTAGCTCATGGGACTTCAAACTCGACCCCTGCGACTCTCTCTTCAGCGACAAGTTCACTTGCGGCTTCCGTTGTGACCTAATCGACGACTCCGGTGTGAGCCGAGTCACCGAGATCGGCCTAGACCAAGCTGGTTACTCCGGTTCATCCCTCTCCTCCCTCACCTGGAACCTCCCTTACTTGGAAACTCTCGACCTCTCTGGTAACTTCTTCTCTGGTCCCCTCCCCGAGTCCTTATCCAACCTCACTCGCCTCCGTCGACTCATCCTCTCCGGAAACTCATTCTCCGGTCATATACCCACTTCATTTGGGTCTCTTTCTAATCTAGAAGAGCTTTTCCTCGACAACAATAAACTCCAAGGCTCGATCCCTCCCAGTTTCAACAACCTGGTCAGCTTGAACCGGCTGGAAGTCCAAGCCAACACTCTCAGCGGCGAGCTTCCAAACCTCAGCTCACTCACAAGCCTCTACTACTTAGACGCCAGCAACAACGCTATCACCGGTCAAGTTCCGGCTACATTACCGTCCTCGTTGATCCAAATCTCCATGCGAAACAACAGCCTCGTCGGAACAGTCCCGGAAACGATCCAACAATTAGGGTCTCTACAAGTCCTTGACCTGAGTCACAACCAACTCGGTGACTCAATCCCGGCACACCTCTTCTCCCACCCATCTCTCCAGCAGCTCACTCTCTCCTTCAACCACTTCACCTCCCTCCAAACCTCAACCGGAGTCCAAAGCCAGCTCATCGCCGTCGACCTCAGCAACAACAACTTACAAGGTTTCTTACCATTCTTCATGGCCCTAATGCCAAAGCTCTCCGCTTTGTCCCTCGAAAACAATAAGTTCACTGGAATGATCCCAACCCAGTACGCCTTCAAAGTCGCCGTACCCGGCACCGGAGTCTCGCCGTTCGTCCGGCTTCTCCTCGGCGGCAACTACCTCTTCGGACCCTTACCCGGTCCTTTACTTAGTATGAAACCCGGTTCGGCAAATGTAGGTCTAGGCAATAACTGCCTGTACAGATGTCCGAGGGTTTTCTTCTTTTGCCAAGGTGGTGACCAAAAATCGTTATCCGAGTGTAGAAGCTTCGTCCCTGTAATCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

416

Amino Acids

44.85

Weight (kDa)

5.36

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	95 - 325	1.2e-11	Leucine-rich repeat region
LRR_8	PF13855	201 - 258	2.7e-06	Leucine rich repeat
LRR_8	PF13855	270 - 329	1.5e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66330
fragaria_vesca	FvH4_1g12241
malus_domestica	MD02G1136300.v1.1 MD08G1048400.v1.1 MD15G1250000.v1.1
prunus_persica	Prupe.2G102000_v2.0.a1 Prupe.7G164300_v2.0.a1
pyrus_communis	pycom15g22030
rosa_chinensis	RchiOBHm_Chr2g0100031
rosa_laevigata	RLG00000016931
rosa_multiflora	Rmu_co8338191.1_g000001 Rmu_sc0001616.1_g000058 Rmu_sc0006323.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142620
rosa_rugosa	Rorug02G0084800
rosa_samantha	Rh2AG133900 Rh2BG137600 Rh2CG139000 Rh2DG139300 Rh4BG311000
rosa_wichuraiana	Rw2G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1034
AccI	GTMKAC	2 cut(s)	397, 894
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	4 cut(s)	201, 570, 960, 1071
AclWI	GGATC	4 cut(s)	499, 667, 718, 991
AcuI	CTGAAG	3 cut(s)	107, 116, 166
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	3 cut(s)	1010, 1029, 1160
AfiI	CCNNNNNNNGG	4 cut(s)	303, 319, 1037, 1097
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	5 cut(s)	157, 520, 538, 838, 1018
AjnI	CCWGG	2 cut(s)	302, 525
AloI	GAACNNNNNNTCC	1 cut(s)	29
Alw26I	GTCTC	5 cut(s)	34, 66, 456, 744, 1048
AlwI	GGATC	4 cut(s)	499, 667, 718, 991
Ama87I	CYCGRG	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	410
AoxI	GGCC	2 cut(s)	256, 939
ApeKI	GCWGC	2 cut(s)	91, 820
AsiGI	ACCGGT	1 cut(s)	638
AspS9I	GGNCC	4 cut(s)	356, 940, 1088, 1100
AsuC2I	CCSGG	5 cut(s)	716, 788, 1032, 1098, 1122
AsuHPI	GGTGA	6 cut(s)	238, 292, 628, 788, 838, 1208
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	3 cut(s)	356, 1088, 1100
BanI	GGYRCC	1 cut(s)	1034
BbvCI	CCTCAGC	2 cut(s)	587, 899
BbvI	GCAGC	2 cut(s)	103, 832
BccI	CCATC	1 cut(s)	817
BceAI	ACGGC	3 cut(s)	875, 1010, 1033
BciT130I	CCWGG	2 cut(s)	304, 527
BcnI	CCSGG	5 cut(s)	716, 788, 1032, 1098, 1122
BcoDI	GTCTC	5 cut(s)	34, 66, 456, 744, 1048
BfaI	CTAG	5 cut(s)	47, 107, 260, 464, 1142
BisI	GCNGC	5 cut(s)	92, 202, 571, 821, 1072
BlsI	GCNGC	5 cut(s)	93, 203, 572, 822, 1073
Bme1390I	CCNGG	7 cut(s)	304, 527, 716, 788, 1032, 1098, 1122
Bme18I	GGWCC	3 cut(s)	356, 1088, 1100
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	4 cut(s)	356, 940, 1088, 1100
BmiI	GGNNCC	5 cut(s)	133, 308, 358, 1036, 1090
BmrFI	CCNGG	7 cut(s)	304, 527, 716, 788, 1032, 1098, 1122
BmrI	ACTGGG	2 cut(s)	507, 1000
BmuI	ACTGGG	2 cut(s)	507, 1000
BoxI	GACNNNNGTC	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	800
Bpu10I	CCTNAGC	2 cut(s)	587, 899
BpuEI	CTTGAG	2 cut(s)	16, 111
BpuMI	CCSGG	5 cut(s)	716, 788, 1032, 1098, 1122
BsaBI	GATNNNNATC	1 cut(s)	677
BsaHI	GRCGYC	1 cut(s)	618
BsaI	GGTCTC	2 cut(s)	456, 744
BsaJI	CCNNGG	4 cut(s)	496, 1066, 1169, 1189
BsaWI	WCCGGW	7 cut(s)	230, 278, 410, 425, 638, 866, 1037
BsaXI	ACNNNNNCTCC	7 cut(s)	27, 407, 437, 785, 815, 833, 863
Bsc4I	CCNNNNNNNGG	4 cut(s)	303, 319, 1037, 1097
Bse118I	RCCGGY	2 cut(s)	540, 638
Bse1I	ACTGG	3 cut(s)	513, 994, 1006
Bse8I	GATNNNNATC	1 cut(s)	677
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	304, 527
BseDI	CCNNGG	4 cut(s)	496, 1066, 1169, 1189
BseGI	GGATG	2 cut(s)	284, 402
BseJI	GATNNNNATC	1 cut(s)	677
BseLI	CCNNNNNNNGG	4 cut(s)	303, 319, 1037, 1097
BseMII	CTCAG	5 cut(s)	132, 580, 601, 749, 913
BseNI	ACTGG	3 cut(s)	513, 994, 1006
BseRI	GAGGAG	2 cut(s)	283, 1055
BseXI	GCAGC	2 cut(s)	103, 832
BshFI	GGCC	2 cut(s)	258, 941
BshNI	GGYRCC	1 cut(s)	1034
BshTI	ACCGGT	1 cut(s)	638
BsiHKCI	CYCGRG	1 cut(s)	365
BslFI	GGGAC	5 cut(s)	164, 342, 698, 952, 1217
BslI	CCNNNNNNNGG	4 cut(s)	303, 319, 1037, 1097
BsmAI	GTCTC	5 cut(s)	34, 66, 456, 744, 1048
BsmFI	GGGAC	5 cut(s)	164, 342, 698, 952, 1217
BsnI	GGCC	2 cut(s)	258, 941
Bso31I	GGTCTC	2 cut(s)	456, 744
BsoBI	CYCGRG	1 cut(s)	365
Bsp13I	TCCGGA	1 cut(s)	410
Bsp1407I	TGTACA	1 cut(s)	1158
Bsp143I	GATC	5 cut(s)	252, 504, 672, 723, 996
BspACI	CCGC	4 cut(s)	201, 570, 960, 1071
BspANI	GGCC	2 cut(s)	258, 941
BspCNI	CTCAG	5 cut(s)	131, 579, 600, 750, 912
BspEI	TCCGGA	1 cut(s)	410
BspLI	GGNNCC	5 cut(s)	133, 308, 358, 1036, 1090
BspPI	GGATC	4 cut(s)	499, 667, 718, 991
BspQI	GCTCTTC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	1034
BspTNI	GGTCTC	2 cut(s)	456, 744
BsrFI	RCCGGY	2 cut(s)	540, 638
BsrGI	TGTACA	1 cut(s)	1158
BsrI	ACTGG	3 cut(s)	513, 994, 1006
BssAI	RCCGGY	2 cut(s)	540, 638
BssECI	CCNNGG	4 cut(s)	496, 1066, 1169, 1189
BssMI	GATC	5 cut(s)	252, 504, 672, 723, 996
BssNI	GRCGYC	1 cut(s)	618
BssT1I	CCWWGG	2 cut(s)	496, 1189
Bst2UI	CCWGG	2 cut(s)	304, 527
Bst4CI	ACNGT	3 cut(s)	28, 663, 712
Bst6I	CTCTTC	4 cut(s)	185, 462, 803, 1088
BstACI	GRCGYC	1 cut(s)	618
BstAPI	GCANNNNNTGC	1 cut(s)	1152
BstAUI	TGTACA	1 cut(s)	1158
BstC8I	GCNNGC	3 cut(s)	575, 622, 881
BstDEI	CTNAG	7 cut(s)	118, 566, 587, 613, 758, 899, 1109
BstEII	GGTNACC	1 cut(s)	1196
BstF5I	GGATG	2 cut(s)	284, 402
BstKTI	GATC	5 cut(s)	255, 507, 675, 726, 999
BstMAI	GTCTC	5 cut(s)	34, 66, 456, 744, 1048
BstMBI	GATC	5 cut(s)	252, 504, 672, 723, 996
BstMWI	GCNNNNNNNGC	1 cut(s)	1152
BstNI	CCWGG	2 cut(s)	304, 527
BstPAI	GACNNNNGTC	1 cut(s)	759
BstPI	GGTNACC	1 cut(s)	1196
BstSCI	CCNGG	7 cut(s)	302, 525, 714, 786, 1030, 1096, 1120
BstV1I	GCAGC	2 cut(s)	103, 832
BsuRI	GGCC	2 cut(s)	258, 941
BtgZI	GCGATG	1 cut(s)	871
BtsCI	GGATG	2 cut(s)	284, 402
BtsIMutI	CAGTG	1 cut(s)	987
Cac8I	GCNNGC	3 cut(s)	575, 622, 881
Cfr10I	RCCGGY	2 cut(s)	540, 638
Cfr13I	GGNCC	4 cut(s)	356, 940, 1088, 1100
CseI	GACGC	1 cut(s)	626
CsiI	ACCWGGT	1 cut(s)	525
Csp6I	GTAC	3 cut(s)	1009, 1028, 1159
CspAI	ACCGGT	1 cut(s)	638
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	3 cut(s)	147, 685, 937
CviQI	GTAC	3 cut(s)	1009, 1028, 1159
DdeI	CTNAG	7 cut(s)	118, 566, 587, 613, 758, 899, 1109
DpnI	GATC	5 cut(s)	254, 506, 674, 725, 998
DpnII	GATC	5 cut(s)	252, 504, 672, 723, 996
Eam1104I	CTCTTC	4 cut(s)	185, 462, 803, 1088
EarI	CTCTTC	4 cut(s)	185, 462, 803, 1088
Eco130I	CCWWGG	2 cut(s)	496, 1189
Eco31I	GGTCTC	2 cut(s)	456, 744
Eco47I	GGWCC	3 cut(s)	356, 1088, 1100
Eco57I	CTGAAG	3 cut(s)	107, 116, 166
Eco88I	CYCGRG	1 cut(s)	365
Eco91I	GGTNACC	1 cut(s)	1196
EcoO65I	GGTNACC	1 cut(s)	1196
EcoRII	CCWGG	2 cut(s)	302, 525
EcoT14I	CCWWGG	2 cut(s)	496, 1189
ErhI	CCWWGG	2 cut(s)	496, 1189
FaeI	CATG	3 cut(s)	150, 688, 940
FaiI	YATR	6 cut(s)	148, 432, 434, 686, 938, 1115
FaqI	GGGAC	5 cut(s)	164, 342, 698, 952, 1217
FatI	CATG	3 cut(s)	146, 684, 936
FblI	GTMKAC	2 cut(s)	397, 894
Fnu4HI	GCNGC	5 cut(s)	92, 202, 571, 821, 1072
FokI	GGATG	2 cut(s)	271, 389
Fsp4HI	GCNGC	5 cut(s)	92, 202, 571, 821, 1072
FspBI	CTAG	5 cut(s)	47, 107, 260, 464, 1142
GluI	GCNGC	5 cut(s)	92, 202, 571, 821, 1072
GsuI	CTGGAG	1 cut(s)	800
HaeIII	GGCC	2 cut(s)	258, 941
HgaI	GACGC	1 cut(s)	626
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	3 cut(s)	150, 688, 940
HincII	GTYRAC	2 cut(s)	398, 895
HindII	GTYRAC	2 cut(s)	398, 895
HindIII	AAGCTT	1 cut(s)	1225
HphI	GGTGA	6 cut(s)	238, 292, 628, 788, 838, 1208
Hpy166II	GTNNAC	4 cut(s)	195, 398, 895, 987
Hpy188I	TCNGA	5 cut(s)	87, 707, 1088, 1170, 1216
Hpy188III	TCNNGA	3 cut(s)	329, 411, 464
Hpy8I	GTNNAC	4 cut(s)	195, 398, 895, 987
Hpy99I	CGWCG	4 cut(s)	227, 399, 707, 896
HpyAV	CCTTC	3 cut(s)	53, 844, 1024
HpyCH4III	ACNGT	3 cut(s)	28, 663, 712
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1152
HpyF3I	CTNAG	7 cut(s)	118, 566, 587, 613, 758, 899, 1109
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	3 cut(s)	150, 688, 940
Kpn2I	TCCGGA	1 cut(s)	410
Kzo9I	GATC	5 cut(s)	252, 504, 672, 723, 996
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	2 cut(s)	45, 137
Lsp1109I	GCAGC	2 cut(s)	103, 832
MabI	ACCWGGT	1 cut(s)	525
MaeI	CTAG	5 cut(s)	47, 107, 260, 464, 1142
MaeIII	GTNAC	7 cut(s)	212, 244, 272, 341, 761, 776, 1196
MalI	GATC	5 cut(s)	254, 506, 674, 725, 998
MboI	GATC	5 cut(s)	252, 504, 672, 723, 996
MboII	GAAGA	8 cut(s)	109, 172, 340, 479, 790, 925, 1075, 1171
MluCI	AATT	1 cut(s)	731
MlyI	GAGTC	9 cut(s)	167, 221, 252, 377, 393, 769, 773, 879, 1050
MmeI	TCCRAC	3 cut(s)	402, 685, 751
MroI	TCCGGA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	992
MspA1I	CMGCKG	2 cut(s)	94, 570
MspR9I	CCNGG	7 cut(s)	304, 527, 716, 788, 1032, 1098, 1122
MvaI	CCWGG	2 cut(s)	304, 527
MwoI	GCNNNNNNNGC	1 cut(s)	1152
NciI	CCSGG	5 cut(s)	716, 788, 1032, 1098, 1122
NdeII	GATC	5 cut(s)	252, 504, 672, 723, 996
NlaIII	CATG	3 cut(s)	150, 688, 940
NlaIV	GGNNCC	5 cut(s)	133, 308, 358, 1036, 1090
NmeAIII	GCCGAG	2 cut(s)	266, 1047
NmuCI	GTSAC	5 cut(s)	212, 244, 761, 776, 1196
PciSI	GCTCTTC	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 394
PfeI	GAWTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	714
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	5 cut(s)	93, 203, 572, 822, 1073
PleI	GAGTC	9 cut(s)	167, 221, 251, 376, 393, 768, 773, 878, 1049
PpsI	GAGTC	9 cut(s)	167, 221, 251, 376, 393, 768, 773, 878, 1049
PshAI	GACNNNNGTC	1 cut(s)	759
Psp6I	CCWGG	2 cut(s)	302, 525
PspEI	GGTNACC	1 cut(s)	1196
PspGI	CCWGG	2 cut(s)	302, 525
PspN4I	GGNNCC	5 cut(s)	133, 308, 358, 1036, 1090
PspPI	GGNCC	4 cut(s)	356, 940, 1088, 1100
PsrI	GAACNNNNNNTAC	2 cut(s)	299, 331
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	3 cut(s)	1010, 1029, 1160
RsaNI	GTAC	3 cut(s)	1009, 1028, 1159
RseI	CAYNNNNRTG	1 cut(s)	992
SalI	GTCGAC	2 cut(s)	396, 893
SapI	GCTCTTC	1 cut(s)	462
SatI	GCNGC	5 cut(s)	92, 202, 571, 821, 1072
Sau3AI	GATC	5 cut(s)	252, 504, 672, 723, 996
Sau96I	GGNCC	4 cut(s)	356, 940, 1088, 1100
SchI	GAGTC	9 cut(s)	167, 221, 252, 377, 393, 769, 773, 879, 1050
ScrFI	CCNGG	7 cut(s)	304, 527, 716, 788, 1032, 1098, 1122
SexAI	ACCWGGT	1 cut(s)	525
SinI	GGWCC	3 cut(s)	356, 1088, 1100
SmiMI	CAYNNNNRTG	1 cut(s)	992
SmlI	CTYRAG	2 cut(s)	31, 126
SmoI	CTYRAG	2 cut(s)	31, 126
Sse9I	AATT	1 cut(s)	731
SsiI	CCGC	4 cut(s)	201, 570, 960, 1071
SspMI	CTAG	5 cut(s)	47, 107, 260, 464, 1142
StyD4I	CCNGG	7 cut(s)	302, 525, 714, 786, 1030, 1096, 1120
StyI	CCWWGG	2 cut(s)	496, 1189
TaaI	ACNGT	3 cut(s)	28, 663, 712
TaqI	TCGA	8 cut(s)	162, 222, 330, 397, 480, 503, 894, 972
TasI	AATT	1 cut(s)	731
TatI	WGTACW	1 cut(s)	1158
TauI	GCSGC	3 cut(s)	204, 573, 1074
TfiI	GAWTC	1 cut(s)	53
TscAI	CASTG	1 cut(s)	994
TseFI	GTSAC	5 cut(s)	212, 244, 761, 776, 1196
TseI	GCWGC	2 cut(s)	91, 820
Tsp45I	GTSAC	5 cut(s)	212, 244, 761, 776, 1196
TspDTI	ATGAA	4 cut(s)	273, 432, 925, 1130
TspGWI	ACGGA	2 cut(s)	197, 383
TspRI	CASTG	1 cut(s)	994
VpaK11BI	GGWCC	3 cut(s)	356, 1088, 1100
XbaI	TCTAGA	1 cut(s)	463
XmiI	GTMKAC	2 cut(s)	397, 894
XspI	CTAG	5 cut(s)	47, 107, 260, 464, 1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.