Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010221

Physical Location & Seq

Genomic Coordinates Reverse (-)

15794456 .. 15796192

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G102000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCAAAAATTCTCATCGGGTCGAGTGCCCATTGGGTCCTTGACCCTAACGAGGGGAGATTTCAGGAAAAAACAGGGAAGGAGCTGATAGGCCACACAGAGCTTCTCTGCCAAACCTCAAACATGCCACAATCAGAAAACAAACACCAAATGGGTGTTCTTAGCAATTTATCTCCATCTTCTTCGCCCCTTGCTGTTTTGCTAATCACACCCACAACCCTGCAACTACTTGGCCACCTCACATCGCAATTCTTCCGAGACCTGCATGGGCCACCTCATCCCACCGACATGGAGATTCAAGCTCCCGTTGGACTGGTACAAGAACCACAACCTCGTCGTCGTTGGACTGGTCGGGAACTCAAGGTTGGACTGAAGCCAAGCCTTCCGCTCTTTGTCCCAATTCGCGATCTTGGGTCCAGAGTGTATGGGGTTGATCTCGGTCTGAGTCAGCTCATCCGGGTCGTTGGGGTCGGAGTCGGATCGGATCTCGGCCAGGATTCGATTGGTCTCCTCGATGATGTTTTGGTTGACGTCGTCGGCCTCGGAGCTACCCAGGTCAATGGGTTCGCAGTTGCAGAGCTCCACAGAAATGCTGTCAAGGGAACAGTTGCTCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

207

Amino Acids

22.14

Weight (kDa)

6.37

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66330
fragaria_vesca	FvH4_1g12241
malus_domestica	MD02G1136300.v1.1 MD08G1048400.v1.1 MD15G1250000.v1.1
prunus_persica	Prupe.2G102000_v2.0.a1 Prupe.7G164300_v2.0.a1
pyrus_communis	pycom15g22030
rosa_chinensis	RchiOBHm_Chr2g0100031
rosa_laevigata	RLG00000016931
rosa_multiflora	Rmu_co8338191.1_g000001 Rmu_sc0001616.1_g000058 Rmu_sc0006323.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142620
rosa_rugosa	Rorug02G0084800
rosa_samantha	Rh2AG133900 Rh2BG137600 Rh2CG139000 Rh2DG139300 Rh4BG311000
rosa_wichuraiana	Rw2G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	388
AccII	CGCG	1 cut(s)	405
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	2 cut(s)	487, 492
AcoI	YGGCCR	2 cut(s)	232, 490
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	2 cut(s)	52, 53
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	2 cut(s)	492, 552
AjuI	GAANNNNNNNTTGG	4 cut(s)	141, 173, 348, 380
AloI	GAACNNNNNNTCC	1 cut(s)	595
AluBI	AGCT	6 cut(s)	85, 103, 302, 451, 548, 580
AluI	AGCT	6 cut(s)	85, 103, 302, 451, 548, 580
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	2 cut(s)	252, 512
AlwI	GGATC	2 cut(s)	487, 492
AoxI	GGCC	5 cut(s)	91, 232, 269, 490, 538
ApoI	RAATTY	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	37, 269, 414
AsuC2I	CCSGG	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	37, 414
BaeGI	GKGCMC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	582
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	494, 554
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	2 cut(s)	252, 512
BfuAI	ACCTGC	1 cut(s)	270
Bme1390I	CCNGG	3 cut(s)	458, 494, 554
Bme18I	GGWCC	2 cut(s)	37, 414
BmgT120I	GGNCC	3 cut(s)	37, 269, 414
BmiI	GGNNCC	2 cut(s)	38, 415
BmrFI	CCNGG	3 cut(s)	458, 494, 554
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	531
BsaI	GGTCTC	2 cut(s)	252, 512
BsaJI	CCNNGG	2 cut(s)	541, 552
BsaXI	ACNNNNNCTCC	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 53
Bse1I	ACTGG	2 cut(s)	318, 352
BseBI	CCWGG	2 cut(s)	494, 554
BseDI	CCNNGG	2 cut(s)	541, 552
BseGI	GGATG	2 cut(s)	277, 453
BseLI	CCNNNNNNNGG	2 cut(s)	52, 53
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	2 cut(s)	318, 352
BseRI	GAGGAG	2 cut(s)	500, 603
BseSI	GKGCMC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	5 cut(s)	93, 234, 271, 492, 540
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	52, 53
BsmAI	GTCTC	2 cut(s)	252, 512
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	5 cut(s)	93, 234, 271, 492, 540
Bso31I	GGTCTC	2 cut(s)	252, 512
Bsp1286I	GDGCHC	2 cut(s)	31, 582
Bsp143I	GATC	4 cut(s)	406, 433, 479, 484
Bsp68I	TCGCGA	1 cut(s)	405
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	5 cut(s)	93, 234, 271, 492, 540
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	38, 415
BspMI	ACCTGC	1 cut(s)	270
BspPI	GGATC	2 cut(s)	487, 492
BspTNI	GGTCTC	2 cut(s)	252, 512
BsrBI	CCGCTC	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	318, 352
BssECI	CCNNGG	2 cut(s)	541, 552
BssMI	GATC	4 cut(s)	406, 433, 479, 484
BssNI	GRCGYC	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	494, 554
Bst4CI	ACNGT	1 cut(s)	607
BstACI	GRCGYC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	161, 443
BstF5I	GGATG	2 cut(s)	277, 453
BstFNI	CGCG	1 cut(s)	405
BstKTI	GATC	4 cut(s)	409, 436, 482, 487
BstMAI	GTCTC	2 cut(s)	252, 512
BstMBI	GATC	4 cut(s)	406, 433, 479, 484
BstNI	CCWGG	2 cut(s)	494, 554
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	3 cut(s)	456, 492, 552
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	484
BstXI	CCANNNNNNTGG	2 cut(s)	289, 560
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	5 cut(s)	93, 234, 271, 492, 540
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	277, 453
BtuMI	TCGCGA	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	270
Cfr13I	GGNCC	3 cut(s)	37, 269, 414
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	3 cut(s)	124, 266, 289
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	2 cut(s)	161, 443
DpnI	GATC	4 cut(s)	408, 435, 481, 486
DpnII	GATC	4 cut(s)	406, 433, 479, 484
EaeI	YGGCCR	2 cut(s)	232, 490
Ecl136II	GAGCTC	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	582
Eco31I	GGTCTC	2 cut(s)	252, 512
Eco47I	GGWCC	2 cut(s)	37, 414
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	492, 552
EcoT38I	GRGCYC	1 cut(s)	582
FaeI	CATG	3 cut(s)	127, 269, 292
FaiI	YATR	4 cut(s)	125, 267, 290, 426
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	3 cut(s)	123, 265, 288
FokI	GGATG	2 cut(s)	264, 440
FriOI	GRGCYC	1 cut(s)	582
HaeIII	GGCC	5 cut(s)	93, 234, 271, 492, 540
HapII	CCGG	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	3 cut(s)	127, 269, 292
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	4 cut(s)	295, 445, 474, 497
HpaII	CCGG	1 cut(s)	457
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	7 cut(s)	136, 257, 444, 473, 479, 484, 545
Hpy188III	TCNNGA	4 cut(s)	65, 353, 404, 417
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	4 cut(s)	339, 342, 536, 539
HpyAV	CCTTC	2 cut(s)	73, 392
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	223, 265, 575
HpyF3I	CTNAG	2 cut(s)	161, 443
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	127, 269, 292
Kzo9I	GATC	4 cut(s)	406, 433, 479, 484
LmnI	GCTCC	5 cut(s)	82, 307, 545, 585, 616
MaeII	ACGT	1 cut(s)	531
MalI	GATC	4 cut(s)	408, 435, 481, 486
MbiI	CCGCTC	1 cut(s)	388
MboI	GATC	4 cut(s)	406, 433, 479, 484
MboII	GAAGA	3 cut(s)	171, 174, 244
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	2 cut(s)	31, 582
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	4 cut(s)	9, 166, 248, 399
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	454, 483
MmeI	TCCRAC	5 cut(s)	289, 323, 346, 451, 457
MnlI	CCTC	7 cut(s)	46, 127, 248, 285, 342, 521, 551
Mox20I	TGGCCA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	234
MslI	CAYNNNNRTG	2 cut(s)	287, 588
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	3 cut(s)	458, 494, 554
MvaI	CCWGG	2 cut(s)	494, 554
MvnI	CGCG	1 cut(s)	405
NciI	CCSGG	1 cut(s)	458
NdeII	GATC	4 cut(s)	406, 433, 479, 484
NlaIII	CATG	3 cut(s)	127, 269, 292
NlaIV	GGNNCC	2 cut(s)	38, 415
NmeAIII	GCCGAG	1 cut(s)	468
NruI	TCGCGA	1 cut(s)	405
NspI	RCATGY	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	295, 497
PflFI	GACNNNGTC	1 cut(s)	533
PleI	GAGTC	2 cut(s)	453, 482
PpsI	GAGTC	2 cut(s)	453, 482
PpuMI	RGGWCCY	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	492, 552
PspGI	CCWGG	2 cut(s)	492, 552
PspN4I	GGNNCC	2 cut(s)	38, 415
PspPI	GGNCC	3 cut(s)	37, 269, 414
PspPPI	RGGWCCY	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	484
PsyI	GACNNNGTC	1 cut(s)	533
RruI	TCGCGA	1 cut(s)	405
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
RseI	CAYNNNNRTG	2 cut(s)	287, 588
SacI	GAGCTC	1 cut(s)	582
Sau3AI	GATC	4 cut(s)	406, 433, 479, 484
Sau96I	GGNCC	3 cut(s)	37, 269, 414
SchI	GAGTC	2 cut(s)	454, 483
ScrFI	CCNGG	3 cut(s)	458, 494, 554
SduI	GDGCHC	2 cut(s)	31, 582
SinI	GGWCC	2 cut(s)	37, 414
SmiMI	CAYNNNNRTG	2 cut(s)	287, 588
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	9, 166, 248, 399
SsiI	CCGC	1 cut(s)	386
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	3 cut(s)	456, 492, 552
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	3 cut(s)	23, 500, 513
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	4 cut(s)	9, 166, 248, 399
TfiI	GAWTC	2 cut(s)	295, 497
Tth111I	GACNNNGTC	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	37, 414
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
ZraI	GACGTC	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.