Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001616.1

Orthogroup ID

OG0010221

Physical Location & Seq

Genomic Coordinates Reverse (-)

291184 .. 293408

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001616.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ctggtggttgaaggaggtccgacacttctgcaagccggtccggccacttttcagccggttccgaaagtggagtttccggtgaaggattttggagtcaggcttccagtactggccaaatatgacggtggaaggtggtatggaaggatgcgaaccaggcagaggttatttttatcctctggaggccggttcggtacttttccggccggttccagtgacgccgttggtggttctgggtttatgggatcgagagcttcaagctcaacggtggacattgaacattcaatttcaacggtggataagattggacagagagagaacaaagaagatgctcaaagaaagggatgcaatgctggcatgggtttgcagatgaaggagattgaaaacagaggtcaaatccagaagatggttagatgcctagtcggaactgtcccggaaaccatcacagagttgggttctctacaagtcttcgatctgagtcacaaccaactcggtgactctgtcccggcacacctcttttaccacccatctctccagcagctcactctctccttctaccagttcacctccctccaaatactgaaatcaatactgaggttacctggagatggaaacggcggcgacatagtgaggctgagtgacgccgacgacgcccgacttgatgtagcctcgtctgtaaaggacttgagggaagaacagattattaacagaagaagtggaggagagactcagaagagatcaagagaattgggaataaagggtgagggaaagagacccagaaaggagatgaacgcagtagggggagagagagataagaaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

273

Amino Acids

29.86

Weight (kDa)

9.34

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66330
fragaria_vesca	FvH4_1g12241
malus_domestica	MD02G1136300.v1.1 MD08G1048400.v1.1 MD15G1250000.v1.1
prunus_persica	Prupe.2G102000_v2.0.a1 Prupe.7G164300_v2.0.a1
pyrus_communis	pycom15g22030
rosa_chinensis	RchiOBHm_Chr2g0100031
rosa_laevigata	RLG00000016931
rosa_multiflora	Rmu_co8338191.1_g000001 Rmu_sc0001616.1_g000058 Rmu_sc0006323.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142620
rosa_rugosa	Rorug02G0084800
rosa_samantha	Rh2AG133900 Rh2BG137600 Rh2CG139000 Rh2DG139300 Rh4BG311000
rosa_wichuraiana	Rw2G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	403
AciI	CCGC	1 cut(s)	615
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	3 cut(s)	42, 111, 201
AcyI	GRCGYC	3 cut(s)	216, 639, 648
AfaI	GTAC	2 cut(s)	108, 193
AfiI	CCNNNNNNNGG	3 cut(s)	159, 403, 605
AgsI	TTSAA	6 cut(s)	11, 255, 275, 282, 288, 380
AjnI	CCWGG	2 cut(s)	152, 598
AluBI	AGCT	3 cut(s)	251, 258, 538
AluI	AGCT	3 cut(s)	251, 258, 538
Alw26I	GTCTC	2 cut(s)	716, 763
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	4 cut(s)	42, 111, 181, 201
ApeKI	GCWGC	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	17, 38
AsuC2I	CCSGG	2 cut(s)	431, 503
AsuHPI	GGTGA	4 cut(s)	91, 503, 553, 770
AvaII	GGWCC	2 cut(s)	17, 38
BalI	TGGCCA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	4 cut(s)	397, 446, 532, 599
BceAI	ACGGC	2 cut(s)	203, 628
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	2 cut(s)	154, 600
BcnI	CCSGG	2 cut(s)	431, 503
BcoDI	GTCTC	2 cut(s)	716, 763
BfaI	CTAG	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	536, 616
BlsI	GCNGC	2 cut(s)	537, 617
BmcAI	AGTACT	1 cut(s)	108
Bme1390I	CCNGG	4 cut(s)	154, 431, 503, 600
Bme18I	GGWCC	2 cut(s)	17, 38
BmgT120I	GGNCC	2 cut(s)	17, 38
BmiI	GGNNCC	2 cut(s)	60, 208
BmrFI	CCNGG	4 cut(s)	154, 431, 503, 600
BmsI	GCATC	4 cut(s)	135, 316, 332, 401
BpiI	GAAGAC	1 cut(s)	457
BpmI	CTGGAG	3 cut(s)	198, 515, 621
BpuEI	CTTGAG	1 cut(s)	703
BpuMI	CCSGG	2 cut(s)	431, 503
BsaHI	GRCGYC	3 cut(s)	216, 639, 648
BsaI	GGTCTC	1 cut(s)	763
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 403, 605
Bse118I	RCCGGY	4 cut(s)	35, 55, 183, 203
Bse1I	ACTGG	4 cut(s)	104, 114, 210, 556
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	154, 600
BseGI	GGATG	2 cut(s)	150, 347
BseLI	CCNNNNNNNGG	3 cut(s)	159, 403, 605
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	4 cut(s)	464, 581, 623, 740
BseNI	ACTGG	4 cut(s)	104, 114, 210, 556
BseRI	GAGGAG	1 cut(s)	732
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	547
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	4 cut(s)	44, 113, 183, 203
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	9 cut(s)	36, 41, 56, 77, 184, 200, 204, 431, 503
BslFI	GGGAC	2 cut(s)	413, 485
BslI	CCNNNNNNNGG	3 cut(s)	159, 403, 605
BsmAI	GTCTC	2 cut(s)	716, 763
BsmFI	GGGAC	2 cut(s)	413, 485
BsnI	GGCC	4 cut(s)	44, 113, 183, 203
Bso31I	GGTCTC	1 cut(s)	763
Bsp143I	GATC	3 cut(s)	242, 469, 734
BspACI	CCGC	1 cut(s)	615
BspANI	GGCC	4 cut(s)	44, 113, 183, 203
BspCNI	CTCAG	4 cut(s)	465, 582, 624, 739
BspLI	GGNNCC	2 cut(s)	60, 208
BspPI	GGATC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	4 cut(s)	35, 55, 183, 203
BsrI	ACTGG	4 cut(s)	104, 114, 210, 556
BssAI	RCCGGY	4 cut(s)	35, 55, 183, 203
BssMI	GATC	3 cut(s)	242, 469, 734
BssNI	GRCGYC	3 cut(s)	216, 639, 648
Bst2UI	CCWGG	2 cut(s)	154, 600
Bst4CI	ACNGT	4 cut(s)	125, 265, 292, 427
Bst6I	CTCTTC	1 cut(s)	725
BstACI	GRCGYC	3 cut(s)	216, 639, 648
BstC8I	GCNNGC	2 cut(s)	33, 352
BstDEI	CTNAG	4 cut(s)	473, 590, 632, 726
BstEII	GGTNACC	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	150, 347
BstKTI	GATC	3 cut(s)	245, 472, 737
BstMAI	GTCTC	2 cut(s)	716, 763
BstMBI	GATC	3 cut(s)	242, 469, 734
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 154, 351, 647
BstNI	CCWGG	2 cut(s)	154, 600
BstPI	GGTNACC	1 cut(s)	594
BstSCI	CCNGG	4 cut(s)	152, 429, 501, 598
BstV1I	GCAGC	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	457
BstZI	CGGCCG	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	44, 113, 183, 203
BtsCI	GGATG	2 cut(s)	150, 347
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	33, 352
Cfr10I	RCCGGY	4 cut(s)	35, 55, 183, 203
Cfr13I	GGNCC	2 cut(s)	17, 38
CpoI	CGGWCCG	1 cut(s)	38
CseI	GACGC	3 cut(s)	224, 647, 656
Csp6I	GTAC	2 cut(s)	107, 192
CspI	CGGWCCG	1 cut(s)	38
CviAII	CATG	1 cut(s)	355
CviQI	GTAC	2 cut(s)	107, 192
DdeI	CTNAG	4 cut(s)	473, 590, 632, 726
DpnI	GATC	3 cut(s)	244, 471, 736
DpnII	GATC	3 cut(s)	242, 469, 734
EaeI	YGGCCR	3 cut(s)	42, 111, 201
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
EclXI	CGGCCG	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	763
Eco47I	GGWCC	2 cut(s)	17, 38
Eco52I	CGGCCG	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	594
EcoO65I	GGTNACC	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	152, 598
FaeI	CATG	1 cut(s)	358
FaiI	YATR	5 cut(s)	120, 138, 239, 356, 623
FaqI	GGGAC	2 cut(s)	413, 485
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	536, 616
FokI	GGATG	2 cut(s)	157, 354
Fsp4HI	GCNGC	2 cut(s)	536, 616
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	2 cut(s)	536, 616
GsuI	CTGGAG	3 cut(s)	198, 515, 621
HaeIII	GGCC	4 cut(s)	44, 113, 183, 203
HapII	CCGG	9 cut(s)	36, 41, 56, 77, 184, 200, 204, 431, 503
HgaI	GACGC	3 cut(s)	224, 647, 656
Hin1I	GRCGYC	3 cut(s)	216, 639, 648
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	4 cut(s)	93, 475, 494, 724
HpaII	CCGG	9 cut(s)	36, 41, 56, 77, 184, 200, 204, 431, 503
HphI	GGTGA	4 cut(s)	91, 503, 553, 770
Hpy166II	GTNNAC	2 cut(s)	268, 561
Hpy188I	TCNGA	5 cut(s)	21, 63, 422, 474, 729
Hpy188III	TCNNGA	4 cut(s)	177, 246, 397, 738
Hpy8I	GTNNAC	2 cut(s)	268, 561
Hpy99I	CGWCG	2 cut(s)	647, 650
HpyAV	CCTTC	6 cut(s)	5, 76, 123, 135, 364, 559
HpyCH4III	ACNGT	4 cut(s)	125, 265, 292, 427
HpyCH4V	TGCA	3 cut(s)	31, 345, 364
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 154, 351, 647
HpyF3I	CTNAG	4 cut(s)	473, 590, 632, 726
Hsp92I	GRCGYC	3 cut(s)	216, 639, 648
Hsp92II	CATG	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	242, 469, 734
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	4 cut(s)	135, 316, 332, 401
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	5 cut(s)	212, 476, 491, 594, 635
MalI	GATC	3 cut(s)	244, 471, 736
MboI	GATC	3 cut(s)	242, 469, 734
MboII	GAAGA	6 cut(s)	335, 412, 457, 701, 720, 742
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	2 cut(s)	282, 743
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	4 cut(s)	102, 484, 488, 718
MmeI	TCCRAC	2 cut(s)	44, 400
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	9 cut(s)	36, 41, 56, 77, 184, 200, 204, 431, 503
MspR9I	CCNGG	4 cut(s)	154, 431, 503, 600
MvaI	CCWGG	2 cut(s)	154, 600
MwoI	GCNNNNNNNGC	4 cut(s)	41, 154, 351, 647
NciI	CCSGG	2 cut(s)	431, 503
NdeII	GATC	3 cut(s)	242, 469, 734
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	2 cut(s)	60, 208
NmuCI	GTSAC	4 cut(s)	212, 476, 491, 635
PflFI	GACNNNGTC	1 cut(s)	497
PflMI	CCANNNNNTGG	1 cut(s)	403
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	2 cut(s)	537, 617
PleI	GAGTC	4 cut(s)	101, 483, 488, 718
PpsI	GAGTC	4 cut(s)	101, 483, 488, 718
Psp6I	CCWGG	2 cut(s)	152, 598
PspEI	GGTNACC	1 cut(s)	594
PspGI	CCWGG	2 cut(s)	152, 598
PspN4I	GGNNCC	2 cut(s)	60, 208
PspPI	GGNCC	2 cut(s)	17, 38
PsyI	GACNNNGTC	1 cut(s)	497
RsaI	GTAC	2 cut(s)	108, 193
RsaNI	GTAC	2 cut(s)	107, 192
Rsr2I	CGGWCCG	1 cut(s)	38
RsrII	CGGWCCG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	2 cut(s)	536, 616
Sau3AI	GATC	3 cut(s)	242, 469, 734
Sau96I	GGNCC	2 cut(s)	17, 38
ScaI	AGTACT	1 cut(s)	108
SchI	GAGTC	4 cut(s)	102, 484, 488, 718
ScrFI	CCNGG	4 cut(s)	154, 431, 503, 600
SfaNI	GCATC	4 cut(s)	135, 316, 332, 401
SinI	GGWCC	2 cut(s)	17, 38
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
Sse9I	AATT	2 cut(s)	282, 743
SsiI	CCGC	1 cut(s)	615
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	4 cut(s)	152, 429, 501, 598
TaaI	ACNGT	4 cut(s)	125, 265, 292, 427
TaqI	TCGA	2 cut(s)	245, 468
TasI	AATT	2 cut(s)	282, 743
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	1 cut(s)	618
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	4 cut(s)	212, 476, 491, 635
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	4 cut(s)	212, 476, 491, 635
TspDTI	ATGAA	2 cut(s)	383, 800
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	497
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	2 cut(s)	17, 38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XspI	CTAG	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.