Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010221

Physical Location & Seq

Genomic Coordinates Reverse (-)

47920006 .. 47920357

Gene Structure 352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG311000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGTATCCGACTTCCTCGCCGAGCCGAACATTGAGCTCCTGCGAAACTCAATTACCAAATTTTGAATTCGAGGAAATAACGAGTGAAGCAGAAGAGGTAGGGAGTTTGTTGAGGTTACCTGGCGACGGAGACGGCGGCGACACGGCGAGGCTGAGTGACGCCGACGACGCCGGAGTTGGTGTAGCCTCTTCTGTGGAGGATTTGAGAGAGCTGCGTGCTCTTTCCGGAACCGGTCTCTCCGATAATGACAACGACGGGGTTCCGTTCTACTGTTTCGATGATTTTCTCTTCGAACTGAAGGATTGGGAGCTCCGCCATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.73

Weight (kDa)

4.05

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66330
fragaria_vesca	FvH4_1g12241
malus_domestica	MD02G1136300.v1.1 MD08G1048400.v1.1 MD15G1250000.v1.1
prunus_persica	Prupe.2G102000_v2.0.a1 Prupe.7G164300_v2.0.a1
pyrus_communis	pycom15g22030
rosa_chinensis	RchiOBHm_Chr2g0100031
rosa_laevigata	RLG00000016931
rosa_multiflora	Rmu_co8338191.1_g000001 Rmu_sc0001616.1_g000058 Rmu_sc0006323.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142620
rosa_rugosa	Rorug02G0084800
rosa_samantha	Rh2AG133900 Rh2BG137600 Rh2CG139000 Rh2DG139300 Rh4BG311000
rosa_wichuraiana	Rw2G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	2 cut(s)	138, 316
AcsI	RAATTY	2 cut(s)	61, 68
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	2 cut(s)	162, 171
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	3 cut(s)	39, 214, 313
AluI	AGCT	3 cut(s)	39, 214, 313
Alw21I	GWGCWC	3 cut(s)	41, 223, 315
Alw26I	GTCTC	2 cut(s)	126, 242
Aor13HI	TCCGGA	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	2 cut(s)	61, 68
AsiGI	ACCGGT	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	294
BanII	GRGCYC	2 cut(s)	41, 315
Bbv12I	GWGCWC	3 cut(s)	41, 223, 315
BbvI	GCAGC	1 cut(s)	201
BceAI	ACGGC	2 cut(s)	151, 162
BciT130I	CCWGG	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	126, 242
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	139, 215
BlsI	GCNGC	2 cut(s)	140, 216
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	232, 264
BmrFI	CCNGG	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	294
BsaHI	GRCGYC	2 cut(s)	162, 171
BsaI	GGTCTC	1 cut(s)	242
BsaWI	WCCGGW	2 cut(s)	227, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	201
BshTI	ACCGGT	1 cut(s)	233
BsiHKAI	GWGCWC	3 cut(s)	41, 223, 315
BsiSI	CCGG	3 cut(s)	174, 228, 234
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	126, 242
BsmBI	CGTCTC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1286I	GDGCHC	3 cut(s)	41, 223, 315
Bsp13I	TCCGGA	1 cut(s)	227
BspACI	CCGC	2 cut(s)	138, 316
BspCNI	CTCAG	1 cut(s)	147
BspEI	TCCGGA	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	232, 264
BspT104I	TTCGAA	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssNI	GRCGYC	2 cut(s)	162, 171
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	3 cut(s)	90, 196, 296
BstACI	GRCGYC	2 cut(s)	162, 171
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	155
BstEII	GGTNACC	1 cut(s)	117
BstMAI	GTCTC	2 cut(s)	126, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	123
BstPI	GGTNACC	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	233
CseI	GACGC	2 cut(s)	170, 179
CspAI	ACCGGT	1 cut(s)	233
CviJI	RGCY	6 cut(s)	27, 39, 154, 188, 214, 313
CviKI_1	RGCY	6 cut(s)	27, 39, 154, 188, 214, 313
DdeI	CTNAG	1 cut(s)	155
Eam1104I	CTCTTC	3 cut(s)	90, 196, 296
EarI	CTCTTC	3 cut(s)	90, 196, 296
EciI	GGCGGA	1 cut(s)	305
Ecl136II	GAGCTC	2 cut(s)	39, 313
Eco24I	GRGCYC	2 cut(s)	41, 315
Eco31I	GGTCTC	1 cut(s)	242
Eco53kI	GAGCTC	2 cut(s)	39, 313
Eco57I	CTGAAG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	117
EcoICRI	GAGCTC	2 cut(s)	39, 313
EcoO65I	GGTNACC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	121
EcoT38I	GRGCYC	2 cut(s)	41, 315
Esp3I	CGTCTC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	139, 215
FriOI	GRGCYC	2 cut(s)	41, 315
Fsp4HI	GCNGC	2 cut(s)	139, 215
GluI	GCNGC	2 cut(s)	139, 215
HapII	CCGG	3 cut(s)	174, 228, 234
HgaI	GACGC	2 cut(s)	170, 179
Hin1I	GRCGYC	2 cut(s)	162, 171
HpaII	CCGG	3 cut(s)	174, 228, 234
Hpy188I	TCNGA	2 cut(s)	12, 244
Hpy188III	TCNNGA	1 cut(s)	228
Hpy99I	CGWCG	4 cut(s)	131, 170, 173, 260
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	155
Hsp92I	GRCGYC	2 cut(s)	162, 171
Kpn2I	TCCGGA	1 cut(s)	227
LmnI	GCTCC	3 cut(s)	44, 310, 318
LpnPI	CCDG	6 cut(s)	55, 108, 135, 187, 241, 247
Lsp1109I	GCAGC	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	117, 158
MboII	GAAGA	3 cut(s)	107, 183, 283
MhlI	GDGCHC	3 cut(s)	41, 223, 315
MluCI	AATT	3 cut(s)	53, 61, 68
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	7 cut(s)	28, 67, 91, 108, 144, 193, 199
MroI	TCCGGA	1 cut(s)	227
MspI	CCGG	3 cut(s)	174, 228, 234
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	232, 264
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	158
NspV	TTCGAA	1 cut(s)	294
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	140, 216
Psp124BI	GAGCTC	2 cut(s)	41, 315
Psp6I	CCWGG	1 cut(s)	121
PspEI	GGTNACC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	232, 264
SacI	GAGCTC	2 cut(s)	41, 315
SatI	GCNGC	2 cut(s)	139, 215
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	3 cut(s)	41, 223, 315
SetI	ASST	6 cut(s)	41, 102, 119, 124, 216, 315
SfuI	TTCGAA	1 cut(s)	294
Sse9I	AATT	3 cut(s)	53, 61, 68
SsiI	CCGC	2 cut(s)	138, 316
SstI	GAGCTC	2 cut(s)	41, 315
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	3 cut(s)	72, 279, 294
TasI	AATT	3 cut(s)	53, 61, 68
TauI	GCSGC	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	158
TspGWI	ACGGA	2 cut(s)	144, 255
XapI	RAATTY	2 cut(s)	61, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.